IslandPathversion 1.0

IslandPath Analysis: Vibrio cholerae O395



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.83 STD DEV: 3.88
Vibrio cholerae O395 chromosome 2, complete sequence - 1..3024069
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
407	 46.86	0	455935..456762	-	275	147673293	metQ	VC0395_A0427	-	DL-methionine transporter substrate-binding subunit
408	 52.95	+1	456781..457458	-	225	147675345	-	VC0395_A0428	-	ABC transporter, permease protein
409	 48.41	0	457448..458482	-	344	147674203	metN	VC0395_A0429	-	DL-methionine transporter ATP-binding subunit
410	 49.02	0	458718..459278	+	186	147674205	-	VC0395_A0430	-	D,D-heptose 1,7-bisphosphate phosphatase
411	 49.21	0	459343..460293	+	316	147673437	treR	VC0395_A0431	-	trehalose repressor
412	 49.97	0	460530..461966	+	478	147675677	treB	VC0395_A0432	-	trehalose(maltose)-specific PTS system components IIBC
413	 47.07	0	462046..463734	+	562	147673664	treC	VC0395_A0433	-	trehalose-6-phosphate hydrolase
414	 49.29	0	464791..465849	+	352	147674519	-	VC0395_A0438	-	hypothetical protein
415	 49.66	0	465849..468959	+	1036	147674044	-	VC0395_A0439	-	putative multidrug resistance protein
416	 41.32	-1	469386..469886	+	166	147675486	-	VC0395_A0440	-	phosphotyrosine protein phosphatase
417	 48.44	0	470199..471317	+	372	147674876	wecB	VC0395_A0441	-	UDP-N-acetylglucosamine 2-epimerase
418	 47.83	0	471337..472578	+	413	147674871	wecC	VC0395_A0442	-	UDP-N-acetyl-D-mannosamine dehydrogenase
419	 48.29	0	472575..473129	+	184	147674228	-	VC0395_A0443	-	transferase hexapeptide domain-containing protein
420	 42.91	-1	473126..474274	+	382	147673642	-	VC0395_A0444	-	putative exopolysaccharide biosynthesis protein EpsF
421	 46.28	0	474271..474579	+	102	147675277	-	VC0395_A0445	-	putative polysaccharide export protein
422	 43.12	-1	474594..475676	+	360	147673440	-	VC0395_A0446	-	putative polysaccharide export protein
423	 42.42	-1	475673..476893	+	406	147675442	-	VC0395_A0447	-	hypothetical protein
424	 44.91	0	476904..477335	+	143	147675712	-	VC0395_A0448	-	transferase hexapeptide domain-containing protein
425	 45.94	0	477335..478675	+	446	147673380	-	VC0395_A0449	-	putative capK protein
426	 46.81	0	478651..479748	+	365	147673812	-	VC0395_A0450	-	putative polysaccharide biosynthesis protein
427	 47.88	0	479784..480917	+	377	147674949	-	VC0395_A0451	-	hypothetical protein
428	 46.61	0	480907..481659	+	250	147675424	cpsF	VC0395_A0452	-	UDP-N-acetyl-D-mannosamine transferase
429	 40.20	-1	481855..482670	+	271	147673097	-	VC0395_A0453	-	hypothetical protein
430	 35.04	-2	482876..484102	-	408	147673425	-	VC0395_A0454	-	hypothetical protein
431	 47.15	0	484366..487239	+	957	147674173	-	VC0395_A0455	-	hypothetical protein
432	 45.03	0	487394..488710	-	438	147675069	-	VC0395_A0456	-	hypothetical protein
433	 49.01	0	488886..489491	-	201	147673912	-	VC0395_A0457	-	hypothetical protein
434	 45.06	0	489981..491378	+	465	147673705	-	VC0395_A0458	-	putative capsular polysaccharide biosynthesis glycosyltransferase
435	 47.54	0	491449..492645	+	398	147675750	-	VC0395_A0459	-	hypothetical protein
436	 46.02	0	492649..493176	+	175	147674852	-	VC0395_A0460	-	hypothetical protein
437	 47.43	0	493201..495414	+	737	147674262	-	VC0395_A0461	-	putative exopolysaccharide biosynthesis protein
438	 50.79	0	495447..496139	+	230	147674735	-	VC0395_A0462	-	hypothetical protein
439	 46.72	0	496133..496498	+	121	147675605	-	VC0395_A0463	-	VanZ like family protein
440	 45.56	0	496654..497250	-	198	147673231	-	VC0395_A0464	-	hypothetical protein
441	 49.01	0	497534..498841	+	435	147674000	glyA	VC0395_A0465	-	serine hydroxymethyltransferase
442	 44.35	0	499006..499359	-	117	147674133	-	VC0395_A0466	-	putative lipoprotein
443	 48.14	0	499528..500493	-	321	147673404	lipA	VC0395_A0467	-	lipoyl synthase
444	 46.06	0	500486..501145	-	219	147674188	lipB	VC0395_A0468	-	lipoyltransferase
445	 46.95	0	501324..501602	-	92	147674966	-	VC0395_A0469	-	hypothetical protein
446	 47.11	0	501750..502925	-	391	147675663	dacA-1	VC0395_A0470	-	D-alanyl-D-alanine carboxypeptidase
447	 46.09	0	503017..503808	-	263	147673217	-	VC0395_A0471	-	putative rare lipoprotein A
448	 48.40	0	503808..504929	-	373	147674042	rodA	VC0395_A0472	-	rod shape-determining protein RodA
449	 48.93	0	504926..506842	-	638	147674454	mrdA	VC0395_A0473	-	penicillin-binding protein 2
450	 51.38	0	506849..507319	-	156	147674776	-	VC0395_A0474	-	SPOUT methyltransferase superfamily protein
451	 45.60	0	507322..507639	-	105	147673275	-	VC0395_A0475	-	hypothetical protein
452	 49.56	0	507708..508736	-	342	147673713	holA	VC0395_A0476	-	DNA polymerase III subunit delta
453	 47.35	0	508742..509383	-	213	147674391	rlpB	VC0395_A0477	-	rare lipoprotein B
454	 49.12	0	509533..512217	-	894	147673619	leuS	VC0395_A0478	-	leucyl-tRNA synthetase
455	 46.28	0	512239..512709	+	156	147675601	-	VC0395_A0479	-	hypothetical protein
456	 50.59	0	512765..514282	-	505	147675422	lnt	VC0395_A0480	-	apolipoprotein N-acyltransferase
457	 50.11	0	514323..515198	-	291	147675736	-	VC0395_A0481	-	putative hemolysin
458	 47.53	0	515268..515732	-	154	147673894	-	VC0395_A0482	-	putative metalloprotease
459	 48.73	0	515729..516832	-	367	147673299	-	VC0395_A0483	-	phoH family protein
460	 49.96	0	516900..518324	-	474	147675479	-	VC0395_A0484	-	hypothetical protein
461	 50.69	0	518578..519741	+	387	147674824	-	VC0395_A0485	-	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
462	 45.29	0	519866..520375	-	169	147673335	crr	VC0395_A0486	-	glucose-specific PTS system component
463	 46.11	0	520484..522205	-	573	147674510	ptsI	VC0395_A0487	-	phosphoenolpyruvate-protein phosphotransferase
464	 46.90	0	522339..522596	-	85	147673947	ptsH	VC0395_A0488	-	phosphocarrier protein HPr
465	 46.13	0	522894..523862	-	322	147673306	cysK	VC0395_A0489	-	cysteine synthase A
466	 47.28	0	523985..524737	-	250	147673993	cysZ	VC0395_A0490	-	putative sulfate transport protein CysZ
467	 47.95	0	524967..525842	+	291	147673252	zipA	VC0395_A0491	-	cell division protein ZipA
468	 48.06	0	525975..527984	+	669	147675693	ligA	VC0395_A0492	-	NAD-dependent DNA ligase LigA
469	 45.05	0	528616..529665	+	349	147674775	-	VC0395_A0493	-	putative porin
470	 39.58	-2	529742..530557	+	271	147673133	-	VC0395_A0494	-	putative lipoprotein
471	 49.05	0	530618..531037	+	139	147673719	-	VC0395_A0495	-	MerR family transcriptional regulator
472	 48.89	0	531081..531530	-	149	147674677	-	VC0395_A0496	-	hypothetical protein
473	 45.49	0	531538..532458	-	306	147675435	-	VC0395_A0497	-	hypothetical protein
474	 45.60	0	532889..533809	-	306	147675769	-	VC0395_A0498	-	hypothetical protein
475	 36.75	-2	533981..534097	-	38	147673595	-	VC0395_A0499	-	hypothetical protein
476	 48.07	0	534172..534999	-	275	147673313	-	VC0395_A0500	-	short chain dehydrogenase
477	 48.63	0	535042..535956	-	304	147674184	rcp	VC0395_A0501	-	rcp protein
478	 48.25	0	536350..536919	+	189	147674558	-	VC0395_A0502	-	phosphodiesterase
479	 49.66	0	537000..537293	-	97	147675101	-	VC0395_A0503	-	hypothetical protein
480	 42.72	-1	537334..537855	-	173	147673605	toxS	VC0395_A0504	-	regulatory protein ToxS
481	 45.08	0	537865..538749	-	294	147674563	toxR	VC0395_A0505	-	cholera toxin transcriptional activator
482	 45.75	0	538977..540884	+	635	147674825	htpG	VC0395_A0506	-	heat shock protein 90
483	 46.98	0	541219..541863	+	214	147673458	adk	VC0395_A0507	-	adenylate kinase
484	 47.59	0	541978..542952	+	324	147674210	hemH	VC0395_A0508	-	ferrochelatase
485	 46.21	0	543050..544594	-	514	147675039	tppB	VC0395_A0509	-	putative tripeptide transporter permease
486	 33.33	-2	544755..544877	+	40	147674992	-	VC0395_A0510	-	hypothetical protein
487	 45.38	0	545039..545536	+	165	147675715	rfaH	VC0395_A0511	-	transcriptional activator RfaH
488	 46.43	0	545697..547361	-	554	147673054	asnB	VC0395_A0512	-	asparagine synthetase B
489	 47.51	0	547557..549143	-	528	147673979	-	VC0395_A0513	-	putative glutathione-regulated potassium-efflux system protein KefB
490	 46.91	0	549238..550452	-	404	147673497	nagC	VC0395_A0514	-	N-acetylglucosamine repressor
491	 45.82	0	550455..551591	-	378	147674117	nagA	VC0395_A0515	-	N-acetylglucosamine-6-phosphate deacetylase
492	 49.05	0	552060..553631	+	523	147675085	nagE	VC0395_A0516	-	PTS system, N-acetylglucosamine-specific IIABC component
493	 46.50	0	553879..555549	+	556	147674963	glnS	VC0395_A0517	-	glutaminyl-tRNA synthetase
494	 49.51	0	555714..560579	+	1621	147673505	-	VC0395_A0519	-	hypothetical protein
495	 44.79	0	555830..555925	-	31	147674165	-	VC0395_A0518	-	hypothetical protein
496	 50.82	0	560701..561495	+	264	147674772	truA	VC0395_A0520	-	tRNA pseudouridine synthase A
497	 50.27	0	561669..562595	+	308	147674043	accD	VC0395_A0521	-	acetyl-CoA carboxylase subunit beta
498	 50.95	0	562640..563905	+	421	147673270	folC	VC0395_A0522	-	folylpolyglutamate synthase/dihydrofolate synthase
499	 47.24	0	563906..564502	+	198	147675233	dedD	VC0395_A0523	-	dedD protein
500	 46.75	0	564565..565056	+	163	147673757	-	VC0395_A0524	-	bacteriocin production protein
501	 48.51	0	565089..566603	+	504	147673131	purF	VC0395_A0525	-	amidophosphoribosyltransferase
502	 51.36	0	566730..568055	-	441	147673585	-	VC0395_A0526	-	hypothetical protein
503	 46.99	0	568156..568887	-	243	147675730	rnt	VC0395_A0527	-	ribonuclease T
504	 43.06	-1	568900..569043	-	47	147674575	-	VC0395_A0528	-	hypothetical protein
505	 47.91	0	569104..569988	+	294	147674163	motY	VC0395_A0529	-	sodium-type flagellar protein MotY
506	 48.30	0	570037..570477	-	146	147675139	-	VC0395_A0530	-	hypothetical protein
47.83	MEAN

3.88	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.