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Vibrio cholerae O395 chromosome 2, complete sequence - 1..3024069 2742 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 383 46.03 0 431619..431744 + 41 147674880 rpmJ VC0395_A0403 - 50S ribosomal protein L36 384 49.72 0 431927..433531 + 534 147673146 - VC0395_A0404 - hypothetical protein 385 54.22 +1 433597..434046 - 149 147673556 - VC0395_A0405 - hypothetical protein 386 49.67 0 434043..434342 - 99 147674055 - VC0395_A0406 - hypothetical protein 387 48.08 0 435107..435730 + 207 147675591 - VC0395_A0408 - acetyltransferase-related protein 388 48.84 0 435687..435989 - 100 147673114 - VC0395_A0407 - hypothetical protein 389 50.96 0 435993..437030 - 345 147674808 - VC0395_A0409 - hypothetical protein 390 52.88 +1 437119..437430 + 103 147674977 - VC0395_A0410 - hypothetical protein 391 50.48 0 437431..438165 + 244 147674217 - VC0395_A0411 - tRNA pseudouridine synthase C 392 51.83 +1 438263..440143 - 626 147675127 dxs VC0395_A0412 - 1-deoxy-D-xylulose-5-phosphate synthase 393 51.30 0 440163..441047 - 294 147674651 ispA VC0395_A0413 - geranyltranstransferase 394 51.85 +1 441089..441331 - 80 147675304 xseB VC0395_A0414 - exodeoxyribonuclease VII small subunit 395 49.54 0 441646..442410 + 254 147674601 pomA VC0395_A0415 - flagellar motor protein PomA 396 50.26 0 442422..443378 + 318 147674334 motB VC0395_A0416 - flagellar motor protein MotB 397 48.00 0 443586..445133 + 515 147673207 thiI VC0395_A0417 - thiamine biosynthesis protein ThiI 398 46.47 0 445755..446675 + 306 147675583 - VC0395_A0418 - DNA-binding transcriptional activator GcvA 399 51.94 +1 446697..447083 + 128 147674965 - VC0395_A0419 - hypothetical protein 400 47.77 0 447114..447965 - 283 147674734 xni VC0395_A0420 - exonuclease IX 401 49.56 0 448004..449377 - 457 147673433 - VC0395_A0421 - hypothetical protein 402 47.49 0 449582..451156 - 524 147675023 - VC0395_A0422 - GGDEF family protein 403 42.75 -1 451258..453519 - 753 147675739 - VC0395_A0423 - hypothetical protein 404 48.96 0 453534..454397 - 287 147674480 queF VC0395_A0424 - 7-cyano-7-deazaguanine reductase 405 49.92 0 454428..455024 + 198 147673893 syd VC0395_A0425 - SecY interacting protein Syd 406 50.58 0 455026..455802 + 258 147673743 - VC0395_A0426 - hypothetical protein 407 46.86 0 455935..456762 - 275 147673293 metQ VC0395_A0427 - DL-methionine transporter substrate-binding subunit 408 52.95 +1 456781..457458 - 225 147675345 - VC0395_A0428 - ABC transporter, permease protein 409 48.41 0 457448..458482 - 344 147674203 metN VC0395_A0429 - DL-methionine transporter ATP-binding subunit 410 49.02 0 458718..459278 + 186 147674205 - VC0395_A0430 - D,D-heptose 1,7-bisphosphate phosphatase 411 49.21 0 459343..460293 + 316 147673437 treR VC0395_A0431 - trehalose repressor 412 49.97 0 460530..461966 + 478 147675677 treB VC0395_A0432 - trehalose(maltose)-specific PTS system components IIBC 413 47.07 0 462046..463734 + 562 147673664 treC VC0395_A0433 - trehalose-6-phosphate hydrolase 414 49.29 0 464791..465849 + 352 147674519 - VC0395_A0438 - hypothetical protein 415 49.66 0 465849..468959 + 1036 147674044 - VC0395_A0439 - putative multidrug resistance protein 416 41.32 -1 469386..469886 + 166 147675486 - VC0395_A0440 - phosphotyrosine protein phosphatase 417 48.44 0 470199..471317 + 372 147674876 wecB VC0395_A0441 - UDP-N-acetylglucosamine 2-epimerase 418 47.83 0 471337..472578 + 413 147674871 wecC VC0395_A0442 - UDP-N-acetyl-D-mannosamine dehydrogenase 419 48.29 0 472575..473129 + 184 147674228 - VC0395_A0443 - transferase hexapeptide domain-containing protein 420 42.91 -1 473126..474274 + 382 147673642 - VC0395_A0444 - putative exopolysaccharide biosynthesis protein EpsF 421 46.28 0 474271..474579 + 102 147675277 - VC0395_A0445 - putative polysaccharide export protein 422 43.12 -1 474594..475676 + 360 147673440 - VC0395_A0446 - putative polysaccharide export protein 423 42.42 -1 475673..476893 + 406 147675442 - VC0395_A0447 - hypothetical protein 424 44.91 0 476904..477335 + 143 147675712 - VC0395_A0448 - transferase hexapeptide domain-containing protein 425 45.94 0 477335..478675 + 446 147673380 - VC0395_A0449 - putative capK protein 426 46.81 0 478651..479748 + 365 147673812 - VC0395_A0450 - putative polysaccharide biosynthesis protein 427 47.88 0 479784..480917 + 377 147674949 - VC0395_A0451 - hypothetical protein 428 46.61 0 480907..481659 + 250 147675424 cpsF VC0395_A0452 - UDP-N-acetyl-D-mannosamine transferase 429 40.20 -1 481855..482670 + 271 147673097 - VC0395_A0453 - hypothetical protein 430 35.04 -2 482876..484102 - 408 147673425 - VC0395_A0454 - hypothetical protein 431 47.15 0 484366..487239 + 957 147674173 - VC0395_A0455 - hypothetical protein 432 45.03 0 487394..488710 - 438 147675069 - VC0395_A0456 - hypothetical protein 433 49.01 0 488886..489491 - 201 147673912 - VC0395_A0457 - hypothetical protein 434 45.06 0 489981..491378 + 465 147673705 - VC0395_A0458 - putative capsular polysaccharide biosynthesis glycosyltransferase 435 47.54 0 491449..492645 + 398 147675750 - VC0395_A0459 - hypothetical protein 436 46.02 0 492649..493176 + 175 147674852 - VC0395_A0460 - hypothetical protein 437 47.43 0 493201..495414 + 737 147674262 - VC0395_A0461 - putative exopolysaccharide biosynthesis protein 438 50.79 0 495447..496139 + 230 147674735 - VC0395_A0462 - hypothetical protein 439 46.72 0 496133..496498 + 121 147675605 - VC0395_A0463 - VanZ like family protein 440 45.56 0 496654..497250 - 198 147673231 - VC0395_A0464 - hypothetical protein 441 49.01 0 497534..498841 + 435 147674000 glyA VC0395_A0465 - serine hydroxymethyltransferase 442 44.35 0 499006..499359 - 117 147674133 - VC0395_A0466 - putative lipoprotein 443 48.14 0 499528..500493 - 321 147673404 lipA VC0395_A0467 - lipoyl synthase 444 46.06 0 500486..501145 - 219 147674188 lipB VC0395_A0468 - lipoyltransferase 445 46.95 0 501324..501602 - 92 147674966 - VC0395_A0469 - hypothetical protein 446 47.11 0 501750..502925 - 391 147675663 dacA-1 VC0395_A0470 - D-alanyl-D-alanine carboxypeptidase 447 46.09 0 503017..503808 - 263 147673217 - VC0395_A0471 - putative rare lipoprotein A 448 48.40 0 503808..504929 - 373 147674042 rodA VC0395_A0472 - rod shape-determining protein RodA 449 48.93 0 504926..506842 - 638 147674454 mrdA VC0395_A0473 - penicillin-binding protein 2 450 51.38 0 506849..507319 - 156 147674776 - VC0395_A0474 - SPOUT methyltransferase superfamily protein 451 45.60 0 507322..507639 - 105 147673275 - VC0395_A0475 - hypothetical protein 452 49.56 0 507708..508736 - 342 147673713 holA VC0395_A0476 - DNA polymerase III subunit delta 453 47.35 0 508742..509383 - 213 147674391 rlpB VC0395_A0477 - rare lipoprotein B 454 49.12 0 509533..512217 - 894 147673619 leuS VC0395_A0478 - leucyl-tRNA synthetase 455 46.28 0 512239..512709 + 156 147675601 - VC0395_A0479 - hypothetical protein 456 50.59 0 512765..514282 - 505 147675422 lnt VC0395_A0480 - apolipoprotein N-acyltransferase 457 50.11 0 514323..515198 - 291 147675736 - VC0395_A0481 - putative hemolysin 458 47.53 0 515268..515732 - 154 147673894 - VC0395_A0482 - putative metalloprotease 459 48.73 0 515729..516832 - 367 147673299 - VC0395_A0483 - phoH family protein 460 49.96 0 516900..518324 - 474 147675479 - VC0395_A0484 - hypothetical protein 461 50.69 0 518578..519741 + 387 147674824 - VC0395_A0485 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 462 45.29 0 519866..520375 - 169 147673335 crr VC0395_A0486 - glucose-specific PTS system component 463 46.11 0 520484..522205 - 573 147674510 ptsI VC0395_A0487 - phosphoenolpyruvate-protein phosphotransferase 464 46.90 0 522339..522596 - 85 147673947 ptsH VC0395_A0488 - phosphocarrier protein HPr 465 46.13 0 522894..523862 - 322 147673306 cysK VC0395_A0489 - cysteine synthase A 466 47.28 0 523985..524737 - 250 147673993 cysZ VC0395_A0490 - putative sulfate transport protein CysZ 467 47.95 0 524967..525842 + 291 147673252 zipA VC0395_A0491 - cell division protein ZipA 468 48.06 0 525975..527984 + 669 147675693 ligA VC0395_A0492 - NAD-dependent DNA ligase LigA 469 45.05 0 528616..529665 + 349 147674775 - VC0395_A0493 - putative porin 470 39.58 -2 529742..530557 + 271 147673133 - VC0395_A0494 - putative lipoprotein 471 49.05 0 530618..531037 + 139 147673719 - VC0395_A0495 - MerR family transcriptional regulator 472 48.89 0 531081..531530 - 149 147674677 - VC0395_A0496 - hypothetical protein 473 45.49 0 531538..532458 - 306 147675435 - VC0395_A0497 - hypothetical protein 474 45.60 0 532889..533809 - 306 147675769 - VC0395_A0498 - hypothetical protein 475 36.75 -2 533981..534097 - 38 147673595 - VC0395_A0499 - hypothetical protein 476 48.07 0 534172..534999 - 275 147673313 - VC0395_A0500 - short chain dehydrogenase 477 48.63 0 535042..535956 - 304 147674184 rcp VC0395_A0501 - rcp protein 478 48.25 0 536350..536919 + 189 147674558 - VC0395_A0502 - phosphodiesterase 479 49.66 0 537000..537293 - 97 147675101 - VC0395_A0503 - hypothetical protein 480 42.72 -1 537334..537855 - 173 147673605 toxS VC0395_A0504 - regulatory protein ToxS 481 45.08 0 537865..538749 - 294 147674563 toxR VC0395_A0505 - cholera toxin transcriptional activator 482 45.75 0 538977..540884 + 635 147674825 htpG VC0395_A0506 - heat shock protein 90 47.83 MEAN 3.88 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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