IslandPathversion 1.0

IslandPath Analysis: Vibrio cholerae O395



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.83 STD DEV: 3.88
Vibrio cholerae O395 chromosome 2, complete sequence - 1..3024069
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
319	 44.21	0	360536..361114	-	192	147673793	-	VC0395_A0338	-	tellurite resistance protein-related protein
320	 44.58	0	361542..362021	-	159	147673260	-	VC0395_A0339	-	putative transcriptional regulator
321	 42.30	-1	362006..363376	-	456	147675457	-	VC0395_A0340	-	hypothetical protein
322	 45.02	0	363965..364948	+	327	147674822	-	VC0395_A0341	-	putative transposase
323	 42.55	-1	364974..365114	-	46	147673172	-	VC0395_A0342	-	putative transposase
324	 43.84	-1	365436..365654	-	72	147673753	-	VC0395_A0343	-	transposase for transposon
325	 35.73	-2	365996..367621	-	541	147675066	aldA-1	VC0395_A0344	-	aldehyde dehydrogenase
326	 31.95	-2	367697..370738	+	1013	147675654	tagA	VC0395_A0345	-	ToxR-activated gene A protein
327	 30.23	-2	370851..372560	+	569	147674617	-	VC0395_A0346	-	hypothetical protein
328	 32.71	-2	372563..375451	+	962	147673479	-	VC0395_A0347	-	putative inner membrane protein
329	 35.89	-2	375448..376386	+	312	147673162	-	VC0395_A0348	-	hypothetical protein
330	 38.38	-2	376496..376990	+	164	147673729	tagD	VC0395_A0349	-	tagD protein
331	 37.90	-2	377282..379144	-	620	147675729	tcpI	VC0395_A0350	-	toxin co-regulated pilus biosynthesis protein I
332	 37.09	-2	379581..380246	+	221	147673583	tcpP	VC0395_A0351	-	toxin co-regulated pilus biosynthesis protein P
333	 41.85	-1	380231..380641	+	136	147673777	tcpH	VC0395_A0352	-	toxin co-regulated pilus biosynthesis protein H
334	 42.67	-1	381188..381862	+	224	147673187	tcpA	VC0395_A0353	-	toxin co-regulated pilin
335	 40.91	-1	381943..383235	+	430	147674291	tcpB	VC0395_A0354	-	toxin co-regulated pilus biosynthesis protein B
336	 35.32	-2	383235..383687	+	150	147673062	tcpQ	VC0395_A0355	-	toxin co-regulated pilus biosynthesis protein Q
337	 35.92	-2	383690..385159	+	489	147675545	tcpC	VC0395_A0356	-	toxin co-regulated pilus biosynthesis outer membrane protein C
338	 28.07	-2	385152..385607	+	151	147674994	tcpR	VC0395_A0357	-	toxin co-regulated pilus biosynthesis protein R
339	 30.35	-2	385595..386431	+	278	147674167	tcpD	VC0395_A0358	-	toxin co-regulated pilus biosynthesis protein D
340	 30.94	-2	386447..386905	+	152	147673398	tcpS	VC0395_A0359	-	toxin co-regulated pilus biosynthesis protein S
341	 36.11	-2	386895..388406	+	503	147673300	tcpT	VC0395_A0360	-	toxin co-regulated pilus biosynthesis protein T
342	 35.58	-2	388381..389403	+	340	147675450	tcpE	VC0395_A0361	-	toxin co-regulated pilus biosynthesis protein E
343	 34.61	-2	389413..390429	+	338	147675724	tcpF	VC0395_A0362	-	toxin co-regulated pilus biosynthesis protein F
344	 28.28	-2	390636..391466	+	276	147673596	tcpN/toxT	VC0395_A0363	-	TCP pilus virulence regulatory protein
345	 31.50	-2	391466..392227	+	253	147673195	tcpJ	VC0395_A0364	-	leader peptidase TcpJ
346	 34.18	-2	392234..394114	+	626	147673778	acfB	VC0395_A0365	-	accessory colonization factor AcfB
347	 36.32	-2	394120..394890	+	256	147673127	acfC	VC0395_A0366	-	accessory colonization factor AcfC
348	 34.76	-2	395388..396296	+	302	147673859	tagE-1	VC0395_A0367	-	tagE protein
349	 31.33	-2	396299..396946	-	215	147674631	acfA	VC0395_A0368	-	accessory colonization factor AcfA
350	 39.15	-2	397197..397385	+	62	147675418	-	VC0395_A0369	-	accessory colonization factor AcfD
351	 38.50	-2	397351..401682	+	1443	147673383	-	VC0395_A0370	-	putative lipoprotein
352	 37.11	-2	402719..402877	-	52	147674317	-	VC0395_A0371	-	phage family integrase
353	 46.34	0	403597..404865	-	422	147674820	-	VC0395_A0372	-	phage family integrase
354	 48.35	0	405467..405952	-	161	147675473	smpB	VC0395_A0374	-	SsrA-binding protein
355	 47.62	0	406130..406570	+	146	147674875	-	VC0395_A0375	-	hypothetical protein
356	 48.08	0	406567..406878	+	103	147675728	-	VC0395_A0376	-	hypothetical protein
357	 45.01	0	406956..407366	-	136	147673557	smpA	VC0395_A0377	-	small protein A
358	 48.17	0	407474..409138	-	554	147673817	recN	VC0395_A0378	-	recombination and repair protein
359	 46.89	0	409268..410152	-	294	147674418	ppnK	VC0395_A0379	-	inorganic polyphosphate/ATP-NAD kinase
360	 49.42	0	410298..410900	+	200	147673276	grpE	VC0395_A0381	-	heat shock protein GrpE
361	 37.72	-2	410893..411006	-	37	147675381	-	VC0395_A0380	-	hypothetical protein
362	 48.43	0	411164..413071	+	635	147674898	dnaK	VC0395_A0382	-	molecular chaperone DnaK
363	 51.66	0	413272..414417	+	381	147674389	dnaJ	VC0395_A0383	-	dnaJ protein
364	 43.92	-1	414467..414910	-	147	147674856	-	VC0395_A0384	-	putative pilin
365	 42.70	-1	414965..415519	+	184	147675478	-	VC0395_A0385	-	putative type IV pilin
366	 40.63	-1	415488..416090	+	200	147674851	-	VC0395_A0386	-	hypothetical protein
367	 38.73	-2	416081..417322	+	413	147675549	-	VC0395_A0387	-	hypothetical protein
368	 46.03	0	417312..417689	+	125	147674019	-	VC0395_A0388	-	putative type IV pilin
369	 48.46	0	418122..419681	+	519	147674543	-	VC0395_A0389	-	hypothetical protein
370	 48.80	0	419750..420331	+	193	147675155	yfhC	VC0395_A0390	-	zinc-binding domain-containing protein
371	 44.70	0	420377..420508	-	43	147673722	-	VC0395_A0391	-	hypothetical protein
372	 48.40	0	420687..422279	-	530	147674227	-	VC0395_A0392	-	Slt family transglycosylase
373	 41.46	-1	422279..422401	-	40	147673305	-	VC0395_A0393	-	hypothetical protein
374	 38.03	-2	422380..422592	+	70	147673927	-	VC0395_A0394	-	hypothetical protein
375	 52.57	+1	422589..426482	+	1297	147673351	purL	VC0395_A0395	-	phosphoribosylformylglycinamidine synthase
376	 38.81	-2	426657..427094	+	145	147675515	tnpA	VC0395_A0396	-	IS1004 transposase
377	 43.23	-1	427205..427396	-	63	147674900	-	VC0395_A0397	-	hypothetical protein
378	 48.04	0	427402..427605	-	67	147674347	-	VC0395_A0398	-	hypothetical protein
379	 47.29	0	427708..428352	-	214	147673689	-	VC0395_A0399	-	hypothetical protein
380	 50.99	0	428594..430309	-	571	147673158	proS	VC0395_A0400	-	prolyl-tRNA synthetase
381	 48.71	0	430535..431230	-	231	147675289	-	VC0395_A0401	-	hypothetical protein
382	 44.96	0	431365..431622	+	85	147673049	rpmE2	VC0395_A0402	-	50S ribosomal protein L31 type B
383	 46.03	0	431619..431744	+	41	147674880	rpmJ	VC0395_A0403	-	50S ribosomal protein L36
384	 49.72	0	431927..433531	+	534	147673146	-	VC0395_A0404	-	hypothetical protein
385	 54.22	+1	433597..434046	-	149	147673556	-	VC0395_A0405	-	hypothetical protein
386	 49.67	0	434043..434342	-	99	147674055	-	VC0395_A0406	-	hypothetical protein
387	 48.08	0	435107..435730	+	207	147675591	-	VC0395_A0408	-	acetyltransferase-related protein
388	 48.84	0	435687..435989	-	100	147673114	-	VC0395_A0407	-	hypothetical protein
389	 50.96	0	435993..437030	-	345	147674808	-	VC0395_A0409	-	hypothetical protein
390	 52.88	+1	437119..437430	+	103	147674977	-	VC0395_A0410	-	hypothetical protein
391	 50.48	0	437431..438165	+	244	147674217	-	VC0395_A0411	-	tRNA pseudouridine synthase C
392	 51.83	+1	438263..440143	-	626	147675127	dxs	VC0395_A0412	-	1-deoxy-D-xylulose-5-phosphate synthase
393	 51.30	0	440163..441047	-	294	147674651	ispA	VC0395_A0413	-	geranyltranstransferase
394	 51.85	+1	441089..441331	-	80	147675304	xseB	VC0395_A0414	-	exodeoxyribonuclease VII small subunit
395	 49.54	0	441646..442410	+	254	147674601	pomA	VC0395_A0415	-	flagellar motor protein PomA
396	 50.26	0	442422..443378	+	318	147674334	motB	VC0395_A0416	-	flagellar motor protein MotB
397	 48.00	0	443586..445133	+	515	147673207	thiI	VC0395_A0417	-	thiamine biosynthesis protein ThiI
398	 46.47	0	445755..446675	+	306	147675583	-	VC0395_A0418	-	DNA-binding transcriptional activator GcvA
399	 51.94	+1	446697..447083	+	128	147674965	-	VC0395_A0419	-	hypothetical protein
400	 47.77	0	447114..447965	-	283	147674734	xni	VC0395_A0420	-	exonuclease IX
401	 49.56	0	448004..449377	-	457	147673433	-	VC0395_A0421	-	hypothetical protein
402	 47.49	0	449582..451156	-	524	147675023	-	VC0395_A0422	-	GGDEF family protein
403	 42.75	-1	451258..453519	-	753	147675739	-	VC0395_A0423	-	hypothetical protein
404	 48.96	0	453534..454397	-	287	147674480	queF	VC0395_A0424	-	7-cyano-7-deazaguanine reductase
405	 49.92	0	454428..455024	+	198	147673893	syd	VC0395_A0425	-	SecY interacting protein Syd
406	 50.58	0	455026..455802	+	258	147673743	-	VC0395_A0426	-	hypothetical protein
407	 46.86	0	455935..456762	-	275	147673293	metQ	VC0395_A0427	-	DL-methionine transporter substrate-binding subunit
408	 52.95	+1	456781..457458	-	225	147675345	-	VC0395_A0428	-	ABC transporter, permease protein
409	 48.41	0	457448..458482	-	344	147674203	metN	VC0395_A0429	-	DL-methionine transporter ATP-binding subunit
410	 49.02	0	458718..459278	+	186	147674205	-	VC0395_A0430	-	D,D-heptose 1,7-bisphosphate phosphatase
411	 49.21	0	459343..460293	+	316	147673437	treR	VC0395_A0431	-	trehalose repressor
412	 49.97	0	460530..461966	+	478	147675677	treB	VC0395_A0432	-	trehalose(maltose)-specific PTS system components IIBC
413	 47.07	0	462046..463734	+	562	147673664	treC	VC0395_A0433	-	trehalose-6-phosphate hydrolase
414	 49.29	0	464791..465849	+	352	147674519	-	VC0395_A0438	-	hypothetical protein
415	 49.66	0	465849..468959	+	1036	147674044	-	VC0395_A0439	-	putative multidrug resistance protein
416	 41.32	-1	469386..469886	+	166	147675486	-	VC0395_A0440	-	phosphotyrosine protein phosphatase
417	 48.44	0	470199..471317	+	372	147674876	wecB	VC0395_A0441	-	UDP-N-acetylglucosamine 2-epimerase
418	 47.83	0	471337..472578	+	413	147674871	wecC	VC0395_A0442	-	UDP-N-acetyl-D-mannosamine dehydrogenase
47.83	MEAN

3.88	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.