version 1.0
Vibrio cholerae O395 chromosome 2, complete sequence - 1..3024069 2742 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 266 47.79 0 298677..299105 + 142 147673453 ndk VC0395_A0285 - nucleoside diphosphate kinase 267 47.86 0 299279..300400 + 373 147675306 - VC0395_A0286 - hypothetical protein 268 48.82 0 300615..301796 + 393 147675566 - VC0395_A0287 - hypothetical protein 269 50.04 0 301801..302931 + 376 147673394 ispG VC0395_A0288 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 270 49.65 0 302957..304225 + 422 147674318 hisS VC0395_A0289 - histidyl-tRNA synthetase 271 49.11 0 304262..304876 + 204 147674532 - VC0395_A0290 - hypothetical protein 272 51.59 0 304889..306049 + 386 147675122 - VC0395_A0291 - outer membrane protein assembly complex subunit YfgL 273 49.23 0 306242..307726 + 494 147675115 engA VC0395_A0292 - GTP-binding protein EngA 274 46.30 0 307747..308664 + 305 147675742 - VC0395_A0293 - hypothetical protein 275 44.87 0 308969..309202 + 77 147674233 - VC0395_A0295 - hypothetical protein 276 49.66 0 309183..310523 - 446 147675003 xseA VC0395_A0294 - exodeoxyribonuclease VII large subunit 277 49.80 0 310725..312194 + 489 147673264 guaB VC0395_A0296 - inositol-5-monophosphate dehydrogenase 278 48.78 0 312301..313854 + 517 147675501 guaA VC0395_A0297 - bifunctional GMP synthase/glutamine amidotransferase protein 279 49.74 0 314090..315814 + 574 147674479 - VC0395_A0298 - putative chitinase 280 49.16 0 316005..316598 + 197 147673823 - VC0395_A0299 - hypothetical protein 281 48.30 0 316910..317791 + 293 147674293 vibB VC0395_A0300 - vibriobactin-specific isochorismatase 282 50.61 0 317892..319523 - 543 147673711 vibE VC0395_A0301 - vibriobactin-specific 2,3-dihydroxybenzoate-AMP ligase 283 51.85 +1 319534..320721 - 395 147675125 vibC VC0395_A0302 - vibriobactin-specific isochorismate synthase 284 50.44 0 320889..321677 + 262 147674539 - VC0395_A0303 - 2,3-dihydroxybenzoate-2,3-dehydrogenase 285 50.80 0 321689..323005 - 438 147673852 vibH VC0395_A0304 - vibriobactin synthetase, amide synthase subunit VibH 286 49.59 0 323183..324160 + 325 147673071 viuP VC0395_A0305 - iron-enterobactin transporter periplasmic binding protein 287 52.80 +1 324157..325209 + 350 147673882 viuD VC0395_A0306 - vibriobactin and enterobactin ABC transporter, permease protein 288 52.27 +1 325188..326264 + 358 147673105 viuG VC0395_A0307 - vibriobactin and enterobactin ABC transporter, permease protein 289 50.83 0 326381..327220 + 279 147675717 viuC VC0395_A0308 - vibriobactin and enterobactin ABC transporter, ATP-binding protein 290 49.75 0 327151..327936 + 261 147674931 vibD VC0395_A0309 - vibriobactin synthase component D 291 47.03 0 327946..328872 + 308 147674202 - VC0395_A0310 - LysR family transcriptional regulator 292 48.56 0 329090..331072 + 660 147673392 - VC0395_A0311 - hypothetical protein 293 50.42 0 331152..332702 - 516 147673424 - VC0395_A0312 - sodium/alanine symporter 294 51.11 0 333080..334345 - 421 147674088 dadA VC0395_A0313 - D-amino acid dehydrogenase small subunit 295 51.02 0 334446..335378 + 310 147673540 - VC0395_A0314 - LysR family transcriptional regulator 296 50.30 0 335503..335832 + 109 147674137 - VC0395_A0315 - hypothetical protein 297 43.96 -1 335998..336270 + 90 147675073 - VC0395_A0316 - hypothetical protein 298 48.48 0 336304..336996 - 230 147675694 citB VC0395_A0317 - transcriptional regulator CitB 299 50.18 0 337010..338707 - 565 147673181 citA VC0395_A0318 - sensor kinase citA 300 53.69 +1 338778..340079 - 433 147673792 oadB-2 VC0395_A0319 - oxaloacetate decarboxylase, beta subunit 301 53.19 +1 340095..341912 - 605 147674719 oadA-2 VC0395_A0320 - pyruvate carboxylase subunit B 302 48.38 0 341913..342251 - 112 147673526 - VC0395_A0321 - putative oxaloacetate decarboxylase, gamma subunit 303 49.22 0 342280..343626 - 448 147675222 citS VC0395_A0322 - citrate/sodium symporter 304 45.56 0 343888..344958 + 356 147674487 citC VC0395_A0323 - citrate (pro-3S)-lyase ligase 305 53.54 +1 345010..345306 + 98 147673924 citD VC0395_A0324 - citrate lyase subunit gamma 306 55.25 +1 345303..346178 + 291 147673483 citE VC0395_A0325 - citrate lyase, beta subunit 307 52.21 +1 346114..347718 + 534 147674991 citF VC0395_A0326 - citrate lyase, alpha subunit 308 53.63 +1 347715..348251 + 178 147674374 citX VC0395_A0327 - apo-citrate lyase phosphoribosyl-dephospho-CoA transferase 309 51.92 +1 348310..349170 + 286 147675109 citG VC0395_A0328 - triphosphoribosyl-dephospho-CoA synthase CitG 310 49.12 0 349517..349915 + 132 147674507 - VC0395_A0329 - hypothetical protein 311 52.33 +1 349990..350763 + 257 147674554 - VC0395_A0330 - RNA methyltransferase 312 51.23 0 350942..351265 - 107 147673974 - VC0395_A0331 - ferredoxin 313 52.38 +1 351512..353128 + 538 147673362 - VC0395_A0332 - hypothetical protein 314 47.66 0 353196..353879 - 227 147675520 - VC0395_A0333 - hypothetical protein 315 48.64 0 354012..355781 + 589 147674081 - VC0395_A0334 - hypothetical protein 316 34.50 -2 355973..356488 + 171 147673477 - VC0395_A0335 - hypothetical protein 317 32.91 -2 356822..357526 - 234 147675639 - VC0395_A0336 - hypothetical protein 318 43.61 -1 357596..360535 - 979 147675167 - VC0395_A0337 - DEAD-box ATP dependent DNA helicase 319 44.21 0 360536..361114 - 192 147673793 - VC0395_A0338 - tellurite resistance protein-related protein 320 44.58 0 361542..362021 - 159 147673260 - VC0395_A0339 - putative transcriptional regulator 321 42.30 -1 362006..363376 - 456 147675457 - VC0395_A0340 - hypothetical protein 322 45.02 0 363965..364948 + 327 147674822 - VC0395_A0341 - putative transposase 323 42.55 -1 364974..365114 - 46 147673172 - VC0395_A0342 - putative transposase 324 43.84 -1 365436..365654 - 72 147673753 - VC0395_A0343 - transposase for transposon 325 35.73 -2 365996..367621 - 541 147675066 aldA-1 VC0395_A0344 - aldehyde dehydrogenase 326 31.95 -2 367697..370738 + 1013 147675654 tagA VC0395_A0345 - ToxR-activated gene A protein 327 30.23 -2 370851..372560 + 569 147674617 - VC0395_A0346 - hypothetical protein 328 32.71 -2 372563..375451 + 962 147673479 - VC0395_A0347 - putative inner membrane protein 329 35.89 -2 375448..376386 + 312 147673162 - VC0395_A0348 - hypothetical protein 330 38.38 -2 376496..376990 + 164 147673729 tagD VC0395_A0349 - tagD protein 331 37.90 -2 377282..379144 - 620 147675729 tcpI VC0395_A0350 - toxin co-regulated pilus biosynthesis protein I 332 37.09 -2 379581..380246 + 221 147673583 tcpP VC0395_A0351 - toxin co-regulated pilus biosynthesis protein P 333 41.85 -1 380231..380641 + 136 147673777 tcpH VC0395_A0352 - toxin co-regulated pilus biosynthesis protein H 334 42.67 -1 381188..381862 + 224 147673187 tcpA VC0395_A0353 - toxin co-regulated pilin 335 40.91 -1 381943..383235 + 430 147674291 tcpB VC0395_A0354 - toxin co-regulated pilus biosynthesis protein B 336 35.32 -2 383235..383687 + 150 147673062 tcpQ VC0395_A0355 - toxin co-regulated pilus biosynthesis protein Q 337 35.92 -2 383690..385159 + 489 147675545 tcpC VC0395_A0356 - toxin co-regulated pilus biosynthesis outer membrane protein C 338 28.07 -2 385152..385607 + 151 147674994 tcpR VC0395_A0357 - toxin co-regulated pilus biosynthesis protein R 339 30.35 -2 385595..386431 + 278 147674167 tcpD VC0395_A0358 - toxin co-regulated pilus biosynthesis protein D 340 30.94 -2 386447..386905 + 152 147673398 tcpS VC0395_A0359 - toxin co-regulated pilus biosynthesis protein S 341 36.11 -2 386895..388406 + 503 147673300 tcpT VC0395_A0360 - toxin co-regulated pilus biosynthesis protein T 342 35.58 -2 388381..389403 + 340 147675450 tcpE VC0395_A0361 - toxin co-regulated pilus biosynthesis protein E 343 34.61 -2 389413..390429 + 338 147675724 tcpF VC0395_A0362 - toxin co-regulated pilus biosynthesis protein F 344 28.28 -2 390636..391466 + 276 147673596 tcpN/toxT VC0395_A0363 - TCP pilus virulence regulatory protein 345 31.50 -2 391466..392227 + 253 147673195 tcpJ VC0395_A0364 - leader peptidase TcpJ 346 34.18 -2 392234..394114 + 626 147673778 acfB VC0395_A0365 - accessory colonization factor AcfB 347 36.32 -2 394120..394890 + 256 147673127 acfC VC0395_A0366 - accessory colonization factor AcfC 348 34.76 -2 395388..396296 + 302 147673859 tagE-1 VC0395_A0367 - tagE protein 349 31.33 -2 396299..396946 - 215 147674631 acfA VC0395_A0368 - accessory colonization factor AcfA 350 39.15 -2 397197..397385 + 62 147675418 - VC0395_A0369 - accessory colonization factor AcfD 351 38.50 -2 397351..401682 + 1443 147673383 - VC0395_A0370 - putative lipoprotein 352 37.11 -2 402719..402877 - 52 147674317 - VC0395_A0371 - phage family integrase 353 46.34 0 403597..404865 - 422 147674820 - VC0395_A0372 - phage family integrase 354 48.35 0 405467..405952 - 161 147675473 smpB VC0395_A0374 - SsrA-binding protein 355 47.62 0 406130..406570 + 146 147674875 - VC0395_A0375 - hypothetical protein 356 48.08 0 406567..406878 + 103 147675728 - VC0395_A0376 - hypothetical protein 357 45.01 0 406956..407366 - 136 147673557 smpA VC0395_A0377 - small protein A 358 48.17 0 407474..409138 - 554 147673817 recN VC0395_A0378 - recombination and repair protein 359 46.89 0 409268..410152 - 294 147674418 ppnK VC0395_A0379 - inorganic polyphosphate/ATP-NAD kinase 360 49.42 0 410298..410900 + 200 147673276 grpE VC0395_A0381 - heat shock protein GrpE 361 37.72 -2 410893..411006 - 37 147675381 - VC0395_A0380 - hypothetical protein 362 48.43 0 411164..413071 + 635 147674898 dnaK VC0395_A0382 - molecular chaperone DnaK 363 51.66 0 413272..414417 + 381 147674389 dnaJ VC0395_A0383 - dnaJ protein 364 43.92 -1 414467..414910 - 147 147674856 - VC0395_A0384 - putative pilin 365 42.70 -1 414965..415519 + 184 147675478 - VC0395_A0385 - putative type IV pilin 47.83 MEAN 3.88 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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