version 1.0
Vibrio cholerae O395 chromosome 2, complete sequence - 1..3024069 2742 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2588 42.76 -1 2841969..2842265 - 98 147674113 fis VC0395_A2685 - DNA-binding protein Fis 2589 50.00 0 2842289..2843284 - 331 147675018 - VC0395_A2686 - NifR3/Smm1 family protein 2590 53.49 +1 2843397..2844284 - 295 147675659 prmA VC0395_A2687 - ribosomal protein L11 methyltransferase 2591 51.49 0 2844493..2845836 - 447 147673889 accC VC0395_A2688 - acetyl-CoA carboxylase biotin carboxylase subunit 2592 50.43 0 2845851..2846312 - 153 147674671 accB VC0395_A2689 - acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 2593 46.36 0 2846369..2846821 - 150 147674602 aroQ VC0395_A2690 - 3-dehydroquinate dehydratase 2594 51.54 0 2847201..2849150 - 649 162329620 acs-1 VC0395_A2691 - acetyl-CoA synthetase 2595 50.95 0 2849353..2849982 - 209 147675462 - VC0395_A2692 - DNA polymerase III subunit epsilon 2596 50.99 0 2849991..2851814 - 607 147673827 - VC0395_A2693 - hypothetical protein 2597 53.48 +1 2852074..2853264 + 396 147674927 - VC0395_A2694 - putative 3-phenylpropionic acid transporter 2598 51.89 +1 2853357..2856800 + 1147 147675339 - VC0395_A2695 - sensor histidine kinase 2599 50.20 0 2856923..2858416 - 497 147673218 gppA VC0395_A2696 - guanosine pentaphosphate phosphohydrolase 2600 50.95 0 2858424..2859740 - 438 147674746 rhlB VC0395_A2697 - ATP-dependent RNA helicase RhlB 2601 48.01 0 2859852..2860178 + 108 147675356 trxA VC0395_A2698 - thioredoxin 2602 47.62 0 2860376..2861635 + 419 147675619 rho VC0395_A2699 - transcription termination factor Rho 2603 46.41 0 2861734..2862207 + 157 147675236 - VC0395_A2700 - hypothetical protein 2604 46.35 0 2862292..2862729 + 145 147674096 - VC0395_A2701 - hypothetical protein 2605 48.75 0 2862811..2864652 + 613 147675017 - VC0395_A2702 - hypothetical protein 2606 47.78 0 2864649..2864918 + 89 147675441 - VC0395_A2703 - ferredoxin 2607 48.80 0 2864934..2865644 + 236 147673428 fre VC0395_A2704 - FMN reductase 2608 42.03 -1 2865912..2866049 - 45 147673731 - VC0395_A2705 - hypothetical protein 2609 44.74 0 2871796..2873136 - 446 147674199 pssA VC0395_A2714 - phosphatidylserine synthase 2610 45.41 0 2873231..2873677 - 148 147673831 - VC0395_A2715 - hypothetical protein 2611 46.65 0 2873690..2874763 + 357 147673514 murB VC0395_A2716 - UDP-N-acetylenolpyruvoylglucosamine reductase 2612 48.81 0 2874760..2875722 + 320 147675672 birA VC0395_A2717 - biotin--protein ligase 2613 43.88 -1 2875772..2876899 - 375 147674959 coaA VC0395_A2718 - pantothenate kinase 2614 49.03 0 2877411..2878595 + 394 147674962 tufB VC0395_A2723 - elongation factor Tu 2615 48.48 0 2878804..2879199 + 131 147673835 secE VC0395_A2724 - preprotein translocase subunit SecE 2616 46.99 0 2879215..2879763 + 182 147673290 nusG VC0395_A2725 - transcription antitermination protein NusG 2617 47.55 0 2879894..2880322 + 142 147675238 rplK VC0395_A2726 - 50S ribosomal protein L11 2618 47.86 0 2880327..2881028 + 233 147675294 rplA VC0395_A2727 - 50S ribosomal protein L1 2619 48.06 0 2881298..2881786 + 162 147674689 rplJ VC0395_A2728 - 50S ribosomal protein L10 2620 45.08 0 2881853..2882218 + 121 147673429 rplL VC0395_A2729 - 50S ribosomal protein L7/L12 2621 49.25 0 2882357..2886484 + 1375 147674155 rpoB VC0395_A2730 - DNA-directed RNA polymerase subunit beta 2622 50.62 0 2886589..2890794 + 1401 147674725 rpoC VC0395_A2731 - DNA-directed RNA polymerase subunit beta' 2623 44.85 0 2890905..2891399 - 164 147675408 rsd VC0395_A2732 - anti-RNA polymerase sigma 70 factor 2624 50.37 0 2891544..2892353 + 269 147675196 nudC VC0395_A2733 - NADH pyrophosphatase 2625 50.56 0 2892596..2893675 + 359 147675642 hemE VC0395_A2734 - uroporphyrinogen decarboxylase 2626 45.68 0 2893681..2894409 + 242 147673640 - VC0395_A2735 - TetR family transcriptional regulator 2627 51.25 0 2894496..2895455 + 319 147674872 - VC0395_A2737 - hypothetical protein 2628 48.56 0 2895452..2896600 - 382 147674849 - VC0395_A2736 - peptidase family protein 2629 51.08 0 2896769..2898301 - 510 147675493 yibO VC0395_A2738 - phosphoglyceromutase 2630 52.44 +1 2898444..2899385 - 313 147673631 - VC0395_A2739 - hypothetical protein 2631 50.24 0 2899483..2900919 - 478 147675598 - VC0395_A2740 - putative transporter 2632 52.45 +1 2901106..2901963 - 285 147674504 psd VC0395_A2741 - phosphatidylserine decarboxylase 2633 48.40 0 2902059..2903120 - 353 147674254 rsgA VC0395_A2742 - ribosome-associated GTPase 2634 45.60 0 2903243..2903788 + 181 147673115 orn VC0395_A2743 - oligoribonuclease 2635 44.20 0 2905177..2905314 + 45 147675258 - VC0395_A2752 - hypothetical protein 2636 48.38 0 2905661..2906770 - 369 147674159 - VC0395_A2753 - iron-sulfur cluster-binding protein 2637 43.74 -1 2906873..2907439 + 188 147673406 - VC0395_A2754 - hypothetical protein 2638 47.48 0 2907406..2909151 + 581 147675682 amiB VC0395_A2755 - N-acetylmuramoyl-L-alanine amidase 2639 50.36 0 2909158..2911119 + 653 147675065 mutL VC0395_A2756 - DNA mismatch repair protein 2640 48.84 0 2911116..2912063 + 315 147673758 miaA VC0395_A2757 - tRNA delta(2)-isopentenylpyrophosphate transferase 2641 46.59 0 2912235..2912498 + 87 147674122 hfq VC0395_A2758 - RNA-binding protein Hfq 2642 48.14 0 2912531..2913820 + 429 147673365 hflX VC0395_A2759 - putative GTPase HflX 2643 49.49 0 2913866..2915053 + 395 147675327 hflK VC0395_A2760 - hflK protein 2644 46.89 0 2915056..2916036 + 326 147673768 hflC VC0395_A2761 - hflC protein 2645 51.21 0 2916079..2916285 + 68 147674322 - VC0395_A2762 - hypothetical protein 2646 44.75 0 2916326..2916544 - 72 147675283 slyX VC0395_A2763 - hypothetical protein 2647 49.19 0 2916556..2917539 - 327 147674695 - VC0395_A2764 - putative lipoprotein 2648 38.33 -2 2917573..2917692 + 39 147674161 - VC0395_A2765 - hypothetical protein 2649 46.79 0 2917676..2918455 + 259 147673443 fkpA VC0395_A2766 - peptidyl-prolyl cis-trans isomerase, FKBP-type 2650 46.20 0 2918654..2919376 + 240 147675738 - VC0395_A2767 - hypothetical protein 2651 48.99 0 2919373..2919768 + 131 147674114 - VC0395_A2768 - hypothetical protein 2652 46.78 0 2919765..2920121 + 118 147674171 - VC0395_A2769 - hypothetical protein 2653 42.39 -1 2920131..2920406 + 91 147673402 - VC0395_A2770 - hypothetical protein 2654 46.67 0 2920591..2920965 + 124 147674738 rpsL VC0395_A2771 - 30S ribosomal protein S12 2655 46.28 0 2921081..2921551 + 156 147673949 rpsG VC0395_A2772 - 30S ribosomal protein S7 2656 47.78 0 2921627..2923723 + 698 147675560 fusA-1 VC0395_A2773 - elongation factor G 2657 49.11 0 2923846..2925030 + 394 147674589 tufA VC0395_A2774 - elongation factor Tu 2658 43.92 -1 2925333..2925521 + 62 147674277 bfd VC0395_A2775 - bacterioferritin-associated ferredoxin 2659 40.25 -1 2925591..2926067 + 158 147673399 bfr VC0395_A2776 - bacterioferritin 2660 46.88 0 2926279..2926647 + 122 147675449 rpsF VC0395_A2777 - 30S ribosomal protein S6 2661 45.54 0 2926655..2926957 + 100 147674710 priB VC0395_A2778 - primosomal replication protein N 2662 45.18 0 2926973..2927200 + 75 147675772 rpsR VC0395_A2779 - 30S ribosomal protein S18 2663 46.00 0 2927234..2927683 + 149 147673491 rplI VC0395_A2780 - 50S ribosomal protein L9 2664 43.83 -1 2927745..2928554 - 269 147673196 - VC0395_A2781 - hypothetical protein 2665 50.18 0 2928680..2930086 + 468 147673761 dnaB VC0395_A2782 - replicative DNA helicase 2666 52.22 +1 2930058..2931185 + 375 147674692 alr VC0395_A2783 - alanine racemase 2667 47.14 0 2931269..2931688 - 139 147675338 - VC0395_A2784 - hypothetical protein 2668 49.18 0 2931973..2933625 + 550 147674655 pgi VC0395_A2785 - glucose-6-phosphate isomerase 2669 49.19 0 2933828..2935006 + 392 147675269 - VC0395_A2786 - hypothetical protein 2670 46.97 0 2935123..2935584 - 153 147673647 - VC0395_A2787 - hypothetical protein 2671 44.02 0 2935594..2936061 - 155 147675507 - VC0395_A2788 - putative zinc uptake regulation protein 2672 50.10 0 2936415..2937398 + 327 147675235 - VC0395_A2790 - tRNA-dihydrouridine synthase A 2673 36.88 -2 2937387..2937527 - 46 147673223 - VC0395_A2789 - hypothetical protein 2674 44.13 0 2937558..2937770 + 70 147675737 pspG VC0395_A2791 - phage shock protein G 2675 47.45 0 2937859..2938524 + 221 147674968 - VC0395_A2792 - hypothetical protein 2676 35.67 -2 2938478..2938648 + 56 147674139 - VC0395_A2793 - hypothetical protein 2677 45.56 0 2938606..2938875 + 89 147673415 - VC0395_A2794 - hypothetical protein 2678 48.56 0 2938961..2940805 + 614 147675416 cysJ VC0395_A2795 - sulfite reductase (NADPH) flavoprotein alpha-component 2679 48.73 0 2940805..2942538 + 577 147674639 cysI VC0395_A2796 - sulfite reductase subunit beta 2680 45.41 0 2942531..2943292 + 253 147675403 cysH VC0395_A2797 - phosphoadenosine phosphosulfate reductase 2681 35.00 -2 2943682..2943801 + 39 147673879 - VC0395_A2798 - hypothetical protein 2682 44.49 0 2949592..2950926 - 444 147675705 - VC0395_A2807 - putative Na+/H+ antiporter 2683 49.77 0 2951123..2954803 + 1226 147675082 metH VC0395_A2808 - B12-dependent methionine synthase 2684 50.07 0 2954876..2956315 - 479 147674131 lysC VC0395_A2809 - aspartate kinase III 2685 51.12 0 2956695..2957813 + 372 147673503 - VC0395_A2810 - aminotransferase, class V 2686 48.27 0 2957892..2959685 - 597 147675121 - VC0395_A2811 - hypothetical protein 2687 48.88 0 2959741..2962563 - 940 147674724 uvrA VC0395_A2812 - excinuclease ABC subunit A 47.83 MEAN 3.88 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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