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Vibrio cholerae O395 chromosome 2, complete sequence - 1..3024069 2742 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2539 31.59 -2 2788493..2789353 + 286 147675431 - VC0395_A2636 - RfbT protein 2540 35.13 -2 2789388..2790500 - 370 147674792 rfbV VC0395_A2637 - lipopolysaccharide biosynthesis protein RfbV 2541 43.57 -1 2790508..2792373 - 621 147674200 rfbU VC0395_A2638 - mannosyl-transferase 2542 44.86 0 2792526..2793497 + 323 147673651 galE-1 VC0395_A2639 - UDP-glucose 4-epimerase 2543 43.78 -1 2793505..2794059 + 184 147673652 - VC0395_A2640 - putative capsule biosynthesis protein 2544 44.44 0 2794046..2794162 + 38 147675523 - VC0395_A2641 - hypothetical protein 2545 55.26 +1 2794202..2795569 + 455 147674075 - VC0395_A2642 - hypothetical protein 2546 49.48 0 2795831..2797069 - 412 147673896 - VC0395_A2643 - hypothetical protein 2547 54.28 +1 2797124..2797696 - 190 147673328 - VC0395_A2644 - hypothetical protein 2548 53.25 +1 2797696..2798619 - 307 147675119 - VC0395_A2645 - D-isomer specific 2-hydroxyacid dehydrogenase family protein 2549 47.98 0 2798612..2799280 + 222 147673759 - VC0395_A2646 - hypothetical protein 2550 41.25 -1 2799643..2800842 + 399 147673168 manA-1 VC0395_A2647 - mannose-6-phosphate isomerase 2551 44.24 0 2800808..2801788 + 326 147675748 - VC0395_A2648 - ROK family protein 2552 53.16 +1 2802136..2803194 - 352 147674782 - VC0395_A2649 - hypothetical protein 2553 47.25 0 2803566..2803838 + 90 147674530 hupA VC0395_A2650 - DNA-binding protein HU 2554 48.56 0 2803884..2804579 + 231 147673918 - VC0395_A2651 - putative lipoprotein 2555 54.65 +1 2804679..2805968 - 429 147673352 purD VC0395_A2652 - phosphoribosylamine--glycine ligase 2556 53.23 +1 2806027..2807619 - 530 147673909 purH VC0395_A2653 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 2557 38.89 -2 2807695..2807874 - 59 147673311 - VC0395_A2654 - hypothetical protein 2558 49.75 0 2807905..2808306 + 133 147674759 zntR VC0395_A2655 - zinc-responsive transcriptional regulator 2559 50.25 0 2808467..2810092 + 541 147674140 - VC0395_A2656 - DNA-binding transcriptional activator CadC 2560 51.35 0 2810790..2812127 + 445 147673579 - VC0395_A2657 - lysine/cadaverine antiporter 2561 50.05 0 2812171..2814372 + 733 147675733 cadA VC0395_A2658 - lysine decarboxylase, inducible 2562 51.41 0 2814490..2816160 - 556 147674450 - VC0395_A2659 - methyl-accepting chemotaxis protein 2563 53.17 +1 2816220..2816345 - 41 147673699 - VC0395_A2660 - hypothetical protein 2564 55.46 +1 2816397..2817074 - 225 147674414 - VC0395_A2661 - hypothetical protein 2565 52.62 +1 2817095..2819137 - 680 147673813 - VC0395_A2662 - TonB system receptor 2566 54.95 +1 2819358..2819963 - 201 147675527 eda VC0395_A2663 - keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase 2567 54.97 +1 2819976..2821352 - 458 147674889 - VC0395_A2664 - putative gluconate permease 2568 50.97 0 2821506..2822021 + 171 147674289 gntV VC0395_A2665 - thermoresistant gluconokinase 2569 54.48 +1 2822018..2823814 + 598 147673653 edd VC0395_A2666 - phosphogluconate dehydratase 2570 51.55 0 2823890..2824888 - 332 147675184 gntR VC0395_A2667 - gluconate utilization system gnt-I transcriptional repressor 2571 46.20 0 2825227..2826462 + 411 147675645 - VC0395_A2668 - phage integrase family site specific recombinase 2572 46.73 0 2826459..2827451 + 330 147673973 - VC0395_A2669 - Fic family protein 2573 46.86 0 2827873..2830386 + 837 147673323 cas VC0395_A2670 - CRISPR-associated helicase Cas3 domain-containing protein 2574 47.31 0 2830389..2831912 + 507 147673815 cse VC0395_A2671 - CRISPR-associated protein, Cse1 family 2575 50.09 0 2831926..2832486 + 186 147674986 cse VC0395_A2672 - CRISPR-associated protein, Cse2 family 2576 47.38 0 2832479..2833126 + 215 147675727 cse VC0395_A2673 - CRISPR-associated protein, Cse3 family 2577 45.98 0 2833148..2834191 + 347 147673502 cse VC0395_A2674 - CRISPR-associated protein, Cse4 family 2578 48.12 0 2834195..2834911 + 238 147674174 cas5e VC0395_A2675 - CRISPR-associated protein Cas5, ecoli subtype 2579 45.21 0 2834914..2835789 + 291 147674033 cas VC0395_A2676 - CRISPR-associated protein Cas1 2580 44.03 0 2835815..2836057 + 80 147674483 cas VC0395_A2677 - CRISPR-associated protein Cas2 2581 54.45 +1 2837535..2838287 + 250 147675230 - VC0395_A2678 - hypothetical protein 2582 47.70 0 2838621..2839316 + 231 147673714 - VC0395_A2679 - hypothetical protein 2583 34.96 -2 2839318..2839440 + 40 147673135 - VC0395_A2680 - hypothetical protein 2584 44.10 0 2839501..2840085 - 194 147673799 - VC0395_A2681 - hypothetical protein 2585 46.40 0 2840304..2840525 - 73 147674728 - VC0395_A2682 - putative transcriptional regulator 2586 48.72 0 2840525..2840758 - 77 147675272 - VC0395_A2683 - phage transcriptional regulator, AlpA 2587 43.87 -1 2840825..2841232 - 135 147673529 - VC0395_A2684 - hypothetical protein 2588 42.76 -1 2841969..2842265 - 98 147674113 fis VC0395_A2685 - DNA-binding protein Fis 2589 50.00 0 2842289..2843284 - 331 147675018 - VC0395_A2686 - NifR3/Smm1 family protein 2590 53.49 +1 2843397..2844284 - 295 147675659 prmA VC0395_A2687 - ribosomal protein L11 methyltransferase 2591 51.49 0 2844493..2845836 - 447 147673889 accC VC0395_A2688 - acetyl-CoA carboxylase biotin carboxylase subunit 2592 50.43 0 2845851..2846312 - 153 147674671 accB VC0395_A2689 - acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 2593 46.36 0 2846369..2846821 - 150 147674602 aroQ VC0395_A2690 - 3-dehydroquinate dehydratase 2594 51.54 0 2847201..2849150 - 649 162329620 acs-1 VC0395_A2691 - acetyl-CoA synthetase 2595 50.95 0 2849353..2849982 - 209 147675462 - VC0395_A2692 - DNA polymerase III subunit epsilon 2596 50.99 0 2849991..2851814 - 607 147673827 - VC0395_A2693 - hypothetical protein 2597 53.48 +1 2852074..2853264 + 396 147674927 - VC0395_A2694 - putative 3-phenylpropionic acid transporter 2598 51.89 +1 2853357..2856800 + 1147 147675339 - VC0395_A2695 - sensor histidine kinase 2599 50.20 0 2856923..2858416 - 497 147673218 gppA VC0395_A2696 - guanosine pentaphosphate phosphohydrolase 2600 50.95 0 2858424..2859740 - 438 147674746 rhlB VC0395_A2697 - ATP-dependent RNA helicase RhlB 2601 48.01 0 2859852..2860178 + 108 147675356 trxA VC0395_A2698 - thioredoxin 2602 47.62 0 2860376..2861635 + 419 147675619 rho VC0395_A2699 - transcription termination factor Rho 2603 46.41 0 2861734..2862207 + 157 147675236 - VC0395_A2700 - hypothetical protein 2604 46.35 0 2862292..2862729 + 145 147674096 - VC0395_A2701 - hypothetical protein 2605 48.75 0 2862811..2864652 + 613 147675017 - VC0395_A2702 - hypothetical protein 2606 47.78 0 2864649..2864918 + 89 147675441 - VC0395_A2703 - ferredoxin 2607 48.80 0 2864934..2865644 + 236 147673428 fre VC0395_A2704 - FMN reductase 2608 42.03 -1 2865912..2866049 - 45 147673731 - VC0395_A2705 - hypothetical protein 2609 44.74 0 2871796..2873136 - 446 147674199 pssA VC0395_A2714 - phosphatidylserine synthase 2610 45.41 0 2873231..2873677 - 148 147673831 - VC0395_A2715 - hypothetical protein 2611 46.65 0 2873690..2874763 + 357 147673514 murB VC0395_A2716 - UDP-N-acetylenolpyruvoylglucosamine reductase 2612 48.81 0 2874760..2875722 + 320 147675672 birA VC0395_A2717 - biotin--protein ligase 2613 43.88 -1 2875772..2876899 - 375 147674959 coaA VC0395_A2718 - pantothenate kinase 2614 49.03 0 2877411..2878595 + 394 147674962 tufB VC0395_A2723 - elongation factor Tu 2615 48.48 0 2878804..2879199 + 131 147673835 secE VC0395_A2724 - preprotein translocase subunit SecE 2616 46.99 0 2879215..2879763 + 182 147673290 nusG VC0395_A2725 - transcription antitermination protein NusG 2617 47.55 0 2879894..2880322 + 142 147675238 rplK VC0395_A2726 - 50S ribosomal protein L11 2618 47.86 0 2880327..2881028 + 233 147675294 rplA VC0395_A2727 - 50S ribosomal protein L1 2619 48.06 0 2881298..2881786 + 162 147674689 rplJ VC0395_A2728 - 50S ribosomal protein L10 2620 45.08 0 2881853..2882218 + 121 147673429 rplL VC0395_A2729 - 50S ribosomal protein L7/L12 2621 49.25 0 2882357..2886484 + 1375 147674155 rpoB VC0395_A2730 - DNA-directed RNA polymerase subunit beta 2622 50.62 0 2886589..2890794 + 1401 147674725 rpoC VC0395_A2731 - DNA-directed RNA polymerase subunit beta' 2623 44.85 0 2890905..2891399 - 164 147675408 rsd VC0395_A2732 - anti-RNA polymerase sigma 70 factor 2624 50.37 0 2891544..2892353 + 269 147675196 nudC VC0395_A2733 - NADH pyrophosphatase 2625 50.56 0 2892596..2893675 + 359 147675642 hemE VC0395_A2734 - uroporphyrinogen decarboxylase 2626 45.68 0 2893681..2894409 + 242 147673640 - VC0395_A2735 - TetR family transcriptional regulator 2627 51.25 0 2894496..2895455 + 319 147674872 - VC0395_A2737 - hypothetical protein 2628 48.56 0 2895452..2896600 - 382 147674849 - VC0395_A2736 - peptidase family protein 2629 51.08 0 2896769..2898301 - 510 147675493 yibO VC0395_A2738 - phosphoglyceromutase 2630 52.44 +1 2898444..2899385 - 313 147673631 - VC0395_A2739 - hypothetical protein 2631 50.24 0 2899483..2900919 - 478 147675598 - VC0395_A2740 - putative transporter 2632 52.45 +1 2901106..2901963 - 285 147674504 psd VC0395_A2741 - phosphatidylserine decarboxylase 2633 48.40 0 2902059..2903120 - 353 147674254 rsgA VC0395_A2742 - ribosome-associated GTPase 2634 45.60 0 2903243..2903788 + 181 147673115 orn VC0395_A2743 - oligoribonuclease 2635 44.20 0 2905177..2905314 + 45 147675258 - VC0395_A2752 - hypothetical protein 2636 48.38 0 2905661..2906770 - 369 147674159 - VC0395_A2753 - iron-sulfur cluster-binding protein 2637 43.74 -1 2906873..2907439 + 188 147673406 - VC0395_A2754 - hypothetical protein 2638 47.48 0 2907406..2909151 + 581 147675682 amiB VC0395_A2755 - N-acetylmuramoyl-L-alanine amidase 47.83 MEAN 3.88 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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