IslandPathversion 1.0

IslandPath Analysis: Vibrio cholerae O395



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.83 STD DEV: 3.88
Vibrio cholerae O395 chromosome 2, complete sequence - 1..3024069
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2488	 52.77	+1	2738842..2739690	-	282	147674553	-	VC0395_A2584	-	hypothetical protein
2489	 53.49	+1	2739921..2740823	+	300	147675168	murQ	VC0395_A2585	-	N-acetylmuramic acid-6-phosphate etherase
2490	 52.45	+1	2740844..2742292	+	482	147673783	murP	VC0395_A2586	-	N-acetylmuramic acid phosphotransfer permease
2491	 42.33	-1	2742398..2742886	-	162	147675088	-	VC0395_A2587	-	hypothetical protein
2492	 52.13	+1	2742959..2743825	-	288	147675681	-	VC0395_A2588	-	hypothetical protein
2493	 52.44	+1	2743989..2744705	+	238	162329623	rph	VC0395_A2589	-	ribonuclease PH
2494	 48.68	0	2745070..2745714	+	214	147675512	pyrE	VC0395_A2590	-	orotate phosphoribosyltransferase
2495	 53.07	+1	2745800..2746777	-	325	147673251	msbB	VC0395_A2591	-	lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase
2496	 49.63	0	2746788..2747744	-	318	147673430	htrB	VC0395_A2592	-	lipid A biosynthesis lauroyl acyltransferase
2497	 48.03	0	2747741..2748373	-	210	147674218	slmA	VC0395_A2593	-	nucleoid occlusion protein
2498	 44.93	0	2748287..2748424	+	45	147675011	-	VC0395_A2594	-	hypothetical protein
2499	 55.17	+1	2748490..2749689	-	399	147675719	coaBC	VC0395_A2595	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
2500	 50.44	0	2749857..2751551	+	564	147674999	-	VC0395_A2596	-	methyl-accepting chemotaxis protein
2501	 51.26	0	2751663..2752337	+	224	147674401	radC	VC0395_A2597	-	DNA repair protein RadC
2502	 41.48	-1	2752495..2752629	-	44	147675205	-	VC0395_A2598	-	hypothetical protein
2503	 44.73	0	2752632..2752868	+	78	147673253	rpmB	VC0395_A2599	-	ribosomal protein L28
2504	 42.86	-1	2752882..2753049	+	55	147674398	rpmG	VC0395_A2600	-	50S ribosomal protein L33
2505	 49.28	0	2753270..2753758	+	162	147673591	-	VC0395_A2601	-	hypothetical protein
2506	 52.22	+1	2753768..2754577	+	269	147674090	mutM	VC0395_A2602	-	formamidopyrimidine-DNA glycosylase
2507	 49.09	0	2754674..2755168	-	164	147673495	coaD	VC0395_A2603	-	phosphopantetheine adenylyltransferase
2508	 51.45	0	2755279..2756316	+	345	147675321	-	VC0395_A2604	-	putative ADP-heptose--LPS heptosyltransferase II
2509	 49.23	0	2756378..2757157	-	259	147674685	-	VC0395_A2605	-	glycosyl transferase, group 2
2510	 51.12	0	2757200..2758273	-	357	147673782	-	VC0395_A2606	-	lipopolysaccharide biosynthesis protein
2511	 46.16	0	2758353..2759108	+	251	147675676	-	VC0395_A2607	-	3-deoxy-D-manno-octulosonic-acid kinase
2512	 32.60	-2	2759112..2760071	+	319	147674761	-	VC0395_A2608	-	hypothetical protein
2513	 43.98	0	2760075..2761004	-	309	147674123	-	VC0395_A2609	-	hypothetical protein
2514	 46.37	0	2761001..2761744	-	247	147673511	-	VC0395_A2610	-	hypothetical protein
2515	 45.58	0	2761741..2763324	-	527	147674658	-	VC0395_A2611	-	hypothetical protein
2516	 44.09	0	2763315..2763695	-	126	147675074	-	VC0395_A2612	-	hypothetical protein
2517	 47.42	0	2763692..2765011	-	439	147675530	kdtA	VC0395_A2613	-	3-deoxy-D-manno-octulosonic-acid transferase
2518	 44.23	0	2764972..2765760	-	262	147673039	-	VC0395_A2614	-	hypothetical protein
2519	 44.48	0	2765757..2766806	-	349	147673811	-	VC0395_A2615	-	putative lipopolysaccharide biosynthesis protein
2520	 46.30	0	2766803..2767843	-	346	147673095	rfaF	VC0395_A2616	-	ADP-heptose--LPS heptosyltransferase II
2521	 35.25	-2	2767840..2769039	-	399	147673869	-	VC0395_A2617	-	hypothetical protein
2522	 37.04	-2	2769041..2769607	-	188	147674213	-	VC0395_A2618	-	hexapaptide repeat-containing transferase
2523	 45.23	0	2769615..2771387	-	590	147675347	-	VC0395_A2619	-	hypothetical protein
2524	 46.14	0	2771546..2772490	-	314	147674538	rfaD	VC0395_A2620	-	ADP-L-glycero-D-mannoheptose-6-epimerase
2525	 42.13	-1	2772932..2774329	+	465	147675701	rfbA	VC0395_A2621	-	mannose-1-phosphate guanylyltransferase
2526	 38.65	-2	2774332..2775723	+	463	147673913	rfbB	VC0395_A2622	-	phosphomannomutase
2527	 39.57	-2	2775726..2776847	+	373	147674729	gmd	VC0395_A2623	-	GDP-mannose 4,6-dehydratase
2528	 40.04	-2	2776858..2777961	+	367	147673420	rfbE	VC0395_A2624	-	perosamine synthase
2529	 35.06	-2	2777958..2779349	+	463	147673261	rfbG	VC0395_A2625	-	rfbG protein
2530	 34.84	-2	2779321..2780115	+	264	147674342	rfbH	VC0395_A2626	-	lipopolysaccharide/O-antigen transport protein
2531	 36.40	-2	2780054..2780869	+	271	147674780	rfbI	VC0395_A2627	-	lipopolysaccharide/O-antigen transport protein
2532	 33.33	-2	2780908..2781150	+	80	147675250	-	VC0395_A2628	-	putative acyl carrier protein
2533	 37.71	-2	2781156..2782571	+	471	147673559	rfbL	VC0395_A2629	-	rfbL protein
2534	 42.49	-1	2782580..2783704	+	374	147674827	-	VC0395_A2630	-	iron-containing alcohol dehydrogenase family protein RfbM
2535	 42.37	-1	2783695..2786172	+	825	147674238	-	VC0395_A2631	-	acyl protein synthase/acyl-CoA reductase RfbN
2536	 38.98	-2	2786242..2786808	+	188	147674271	-	VC0395_A2632	-	acetyltransferase
2537	 44.44	0	2787580..2787705	+	41	147674557	-	VC0395_A2634	-	rfbqrso22-2
2538	 41.34	-1	2787710..2788096	+	128	147673984	-	VC0395_A2635	-	rfbqrso22-4
2539	 31.59	-2	2788493..2789353	+	286	147675431	-	VC0395_A2636	-	RfbT protein
2540	 35.13	-2	2789388..2790500	-	370	147674792	rfbV	VC0395_A2637	-	lipopolysaccharide biosynthesis protein RfbV
2541	 43.57	-1	2790508..2792373	-	621	147674200	rfbU	VC0395_A2638	-	mannosyl-transferase
2542	 44.86	0	2792526..2793497	+	323	147673651	galE-1	VC0395_A2639	-	UDP-glucose 4-epimerase
2543	 43.78	-1	2793505..2794059	+	184	147673652	-	VC0395_A2640	-	putative capsule biosynthesis protein
2544	 44.44	0	2794046..2794162	+	38	147675523	-	VC0395_A2641	-	hypothetical protein
2545	 55.26	+1	2794202..2795569	+	455	147674075	-	VC0395_A2642	-	hypothetical protein
2546	 49.48	0	2795831..2797069	-	412	147673896	-	VC0395_A2643	-	hypothetical protein
2547	 54.28	+1	2797124..2797696	-	190	147673328	-	VC0395_A2644	-	hypothetical protein
2548	 53.25	+1	2797696..2798619	-	307	147675119	-	VC0395_A2645	-	D-isomer specific 2-hydroxyacid dehydrogenase family protein
2549	 47.98	0	2798612..2799280	+	222	147673759	-	VC0395_A2646	-	hypothetical protein
2550	 41.25	-1	2799643..2800842	+	399	147673168	manA-1	VC0395_A2647	-	mannose-6-phosphate isomerase
2551	 44.24	0	2800808..2801788	+	326	147675748	-	VC0395_A2648	-	ROK family protein
2552	 53.16	+1	2802136..2803194	-	352	147674782	-	VC0395_A2649	-	hypothetical protein
2553	 47.25	0	2803566..2803838	+	90	147674530	hupA	VC0395_A2650	-	DNA-binding protein HU
2554	 48.56	0	2803884..2804579	+	231	147673918	-	VC0395_A2651	-	putative lipoprotein
2555	 54.65	+1	2804679..2805968	-	429	147673352	purD	VC0395_A2652	-	phosphoribosylamine--glycine ligase
2556	 53.23	+1	2806027..2807619	-	530	147673909	purH	VC0395_A2653	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
2557	 38.89	-2	2807695..2807874	-	59	147673311	-	VC0395_A2654	-	hypothetical protein
2558	 49.75	0	2807905..2808306	+	133	147674759	zntR	VC0395_A2655	-	zinc-responsive transcriptional regulator
2559	 50.25	0	2808467..2810092	+	541	147674140	-	VC0395_A2656	-	DNA-binding transcriptional activator CadC
2560	 51.35	0	2810790..2812127	+	445	147673579	-	VC0395_A2657	-	lysine/cadaverine antiporter
2561	 50.05	0	2812171..2814372	+	733	147675733	cadA	VC0395_A2658	-	lysine decarboxylase, inducible
2562	 51.41	0	2814490..2816160	-	556	147674450	-	VC0395_A2659	-	methyl-accepting chemotaxis protein
2563	 53.17	+1	2816220..2816345	-	41	147673699	-	VC0395_A2660	-	hypothetical protein
2564	 55.46	+1	2816397..2817074	-	225	147674414	-	VC0395_A2661	-	hypothetical protein
2565	 52.62	+1	2817095..2819137	-	680	147673813	-	VC0395_A2662	-	TonB system receptor
2566	 54.95	+1	2819358..2819963	-	201	147675527	eda	VC0395_A2663	-	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
2567	 54.97	+1	2819976..2821352	-	458	147674889	-	VC0395_A2664	-	putative gluconate permease
2568	 50.97	0	2821506..2822021	+	171	147674289	gntV	VC0395_A2665	-	thermoresistant gluconokinase
2569	 54.48	+1	2822018..2823814	+	598	147673653	edd	VC0395_A2666	-	phosphogluconate dehydratase
2570	 51.55	0	2823890..2824888	-	332	147675184	gntR	VC0395_A2667	-	gluconate utilization system gnt-I transcriptional repressor
2571	 46.20	0	2825227..2826462	+	411	147675645	-	VC0395_A2668	-	phage integrase family site specific recombinase
2572	 46.73	0	2826459..2827451	+	330	147673973	-	VC0395_A2669	-	Fic family protein
2573	 46.86	0	2827873..2830386	+	837	147673323	cas	VC0395_A2670	-	CRISPR-associated helicase Cas3 domain-containing protein
2574	 47.31	0	2830389..2831912	+	507	147673815	cse	VC0395_A2671	-	CRISPR-associated protein, Cse1 family
2575	 50.09	0	2831926..2832486	+	186	147674986	cse	VC0395_A2672	-	CRISPR-associated protein, Cse2 family
2576	 47.38	0	2832479..2833126	+	215	147675727	cse	VC0395_A2673	-	CRISPR-associated protein, Cse3 family
2577	 45.98	0	2833148..2834191	+	347	147673502	cse	VC0395_A2674	-	CRISPR-associated protein, Cse4 family
2578	 48.12	0	2834195..2834911	+	238	147674174	cas5e	VC0395_A2675	-	CRISPR-associated protein Cas5, ecoli subtype
2579	 45.21	0	2834914..2835789	+	291	147674033	cas	VC0395_A2676	-	CRISPR-associated protein Cas1
2580	 44.03	0	2835815..2836057	+	80	147674483	cas	VC0395_A2677	-	CRISPR-associated protein Cas2
2581	 54.45	+1	2837535..2838287	+	250	147675230	-	VC0395_A2678	-	hypothetical protein
2582	 47.70	0	2838621..2839316	+	231	147673714	-	VC0395_A2679	-	hypothetical protein
2583	 34.96	-2	2839318..2839440	+	40	147673135	-	VC0395_A2680	-	hypothetical protein
2584	 44.10	0	2839501..2840085	-	194	147673799	-	VC0395_A2681	-	hypothetical protein
2585	 46.40	0	2840304..2840525	-	73	147674728	-	VC0395_A2682	-	putative transcriptional regulator
2586	 48.72	0	2840525..2840758	-	77	147675272	-	VC0395_A2683	-	phage transcriptional regulator, AlpA
2587	 43.87	-1	2840825..2841232	-	135	147673529	-	VC0395_A2684	-	hypothetical protein
47.83	MEAN

3.88	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.