version 1.0
Vibrio cholerae O395 chromosome 2, complete sequence - 1..3024069 2742 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2464 48.76 0 2705079..2707094 + 671 147674491 rep VC0395_A2555 - ATP-dependent DNA helicase Rep 2465 50.25 0 2707161..2707568 - 135 147673723 cycB VC0395_A2556 - cytochrome c5 2466 33.33 -2 2708652..2708843 - 63 147673581 - VC0395_A2562 - hypothetical protein 2467 49.88 0 2709203..2710918 + 571 147675747 - VC0395_A2563 - peptide ABC transporter, ATP-binding protein 2468 48.07 0 2710938..2712566 + 542 147674667 - VC0395_A2564 - peptide ABC transporter, periplasmic peptide-binding protein 2469 50.53 0 2712670..2713698 + 342 147674097 - VC0395_A2565 - peptide ABC transporter, permease protein 2470 50.37 0 2713701..2714639 + 312 147673904 - VC0395_A2566 - peptide ABC transporter, permease protein 2471 50.95 0 2714814..2715761 + 315 147673324 - VC0395_A2567 - hypothetical protein 2472 52.65 +1 2715856..2717211 - 451 147675159 gor VC0395_A2568 - glutathione reductase 2473 51.55 0 2717317..2718156 - 279 147674499 - VC0395_A2569 - hypothetical protein 2474 52.23 +1 2718436..2720478 + 680 147673174 prlC VC0395_A2570 - oligopeptidase A 2475 52.99 +1 2720616..2722787 + 723 147675309 uvrD VC0395_A2571 - DNA-dependent helicase II 2476 51.42 0 2723532..2724200 - 222 147675763 - VC0395_A2572 - hypothetical protein 2477 50.06 0 2724275..2725087 - 270 147673771 - VC0395_A2573 - AraC/XylS family transcriptional regulator 2478 55.29 +1 2725235..2727001 - 588 147674349 ggt VC0395_A2574 - gamma-glutamyltranspeptidase 2479 52.15 +1 2727163..2728071 - 302 147673550 rarD VC0395_A2575 - rarD protein 2480 53.35 +1 2728205..2730067 + 620 147673915 recQ VC0395_A2576 - ATP-dependent DNA helicase RecQ 2481 52.67 +1 2730060..2730359 + 99 147673116 - VC0395_A2577 - hypothetical protein 2482 49.74 0 2730515..2730892 + 125 147675460 - VC0395_A2578 - hypothetical protein 2483 50.38 0 2730928..2732763 - 611 147674646 - VC0395_A2579 - putative hemolysin secretion ATP-binding protein 2484 49.51 0 2732835..2734991 + 718 147673484 - VC0395_A2580 - iron(III) compound receptor 2485 52.33 +1 2735050..2735907 + 285 147674286 - VC0395_A2581 - iron(III) ABC transporter, ATP-binding protein 2486 53.54 +1 2735898..2736857 + 319 147674066 - VC0395_A2582 - iron(III) ABC transporter, periplasmic iron-compound-binding protein 2487 56.07 +2 2736854..2738815 + 653 147673981 - VC0395_A2583 - iron-hydroxamate transporter permease subunit 2488 52.77 +1 2738842..2739690 - 282 147674553 - VC0395_A2584 - hypothetical protein 2489 53.49 +1 2739921..2740823 + 300 147675168 murQ VC0395_A2585 - N-acetylmuramic acid-6-phosphate etherase 2490 52.45 +1 2740844..2742292 + 482 147673783 murP VC0395_A2586 - N-acetylmuramic acid phosphotransfer permease 2491 42.33 -1 2742398..2742886 - 162 147675088 - VC0395_A2587 - hypothetical protein 2492 52.13 +1 2742959..2743825 - 288 147675681 - VC0395_A2588 - hypothetical protein 2493 52.44 +1 2743989..2744705 + 238 162329623 rph VC0395_A2589 - ribonuclease PH 2494 48.68 0 2745070..2745714 + 214 147675512 pyrE VC0395_A2590 - orotate phosphoribosyltransferase 2495 53.07 +1 2745800..2746777 - 325 147673251 msbB VC0395_A2591 - lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2496 49.63 0 2746788..2747744 - 318 147673430 htrB VC0395_A2592 - lipid A biosynthesis lauroyl acyltransferase 2497 48.03 0 2747741..2748373 - 210 147674218 slmA VC0395_A2593 - nucleoid occlusion protein 2498 44.93 0 2748287..2748424 + 45 147675011 - VC0395_A2594 - hypothetical protein 2499 55.17 +1 2748490..2749689 - 399 147675719 coaBC VC0395_A2595 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 2500 50.44 0 2749857..2751551 + 564 147674999 - VC0395_A2596 - methyl-accepting chemotaxis protein 2501 51.26 0 2751663..2752337 + 224 147674401 radC VC0395_A2597 - DNA repair protein RadC 2502 41.48 -1 2752495..2752629 - 44 147675205 - VC0395_A2598 - hypothetical protein 2503 44.73 0 2752632..2752868 + 78 147673253 rpmB VC0395_A2599 - ribosomal protein L28 2504 42.86 -1 2752882..2753049 + 55 147674398 rpmG VC0395_A2600 - 50S ribosomal protein L33 2505 49.28 0 2753270..2753758 + 162 147673591 - VC0395_A2601 - hypothetical protein 2506 52.22 +1 2753768..2754577 + 269 147674090 mutM VC0395_A2602 - formamidopyrimidine-DNA glycosylase 2507 49.09 0 2754674..2755168 - 164 147673495 coaD VC0395_A2603 - phosphopantetheine adenylyltransferase 2508 51.45 0 2755279..2756316 + 345 147675321 - VC0395_A2604 - putative ADP-heptose--LPS heptosyltransferase II 2509 49.23 0 2756378..2757157 - 259 147674685 - VC0395_A2605 - glycosyl transferase, group 2 2510 51.12 0 2757200..2758273 - 357 147673782 - VC0395_A2606 - lipopolysaccharide biosynthesis protein 2511 46.16 0 2758353..2759108 + 251 147675676 - VC0395_A2607 - 3-deoxy-D-manno-octulosonic-acid kinase 2512 32.60 -2 2759112..2760071 + 319 147674761 - VC0395_A2608 - hypothetical protein 2513 43.98 0 2760075..2761004 - 309 147674123 - VC0395_A2609 - hypothetical protein 2514 46.37 0 2761001..2761744 - 247 147673511 - VC0395_A2610 - hypothetical protein 2515 45.58 0 2761741..2763324 - 527 147674658 - VC0395_A2611 - hypothetical protein 2516 44.09 0 2763315..2763695 - 126 147675074 - VC0395_A2612 - hypothetical protein 2517 47.42 0 2763692..2765011 - 439 147675530 kdtA VC0395_A2613 - 3-deoxy-D-manno-octulosonic-acid transferase 2518 44.23 0 2764972..2765760 - 262 147673039 - VC0395_A2614 - hypothetical protein 2519 44.48 0 2765757..2766806 - 349 147673811 - VC0395_A2615 - putative lipopolysaccharide biosynthesis protein 2520 46.30 0 2766803..2767843 - 346 147673095 rfaF VC0395_A2616 - ADP-heptose--LPS heptosyltransferase II 2521 35.25 -2 2767840..2769039 - 399 147673869 - VC0395_A2617 - hypothetical protein 2522 37.04 -2 2769041..2769607 - 188 147674213 - VC0395_A2618 - hexapaptide repeat-containing transferase 2523 45.23 0 2769615..2771387 - 590 147675347 - VC0395_A2619 - hypothetical protein 2524 46.14 0 2771546..2772490 - 314 147674538 rfaD VC0395_A2620 - ADP-L-glycero-D-mannoheptose-6-epimerase 2525 42.13 -1 2772932..2774329 + 465 147675701 rfbA VC0395_A2621 - mannose-1-phosphate guanylyltransferase 2526 38.65 -2 2774332..2775723 + 463 147673913 rfbB VC0395_A2622 - phosphomannomutase 2527 39.57 -2 2775726..2776847 + 373 147674729 gmd VC0395_A2623 - GDP-mannose 4,6-dehydratase 2528 40.04 -2 2776858..2777961 + 367 147673420 rfbE VC0395_A2624 - perosamine synthase 2529 35.06 -2 2777958..2779349 + 463 147673261 rfbG VC0395_A2625 - rfbG protein 2530 34.84 -2 2779321..2780115 + 264 147674342 rfbH VC0395_A2626 - lipopolysaccharide/O-antigen transport protein 2531 36.40 -2 2780054..2780869 + 271 147674780 rfbI VC0395_A2627 - lipopolysaccharide/O-antigen transport protein 2532 33.33 -2 2780908..2781150 + 80 147675250 - VC0395_A2628 - putative acyl carrier protein 2533 37.71 -2 2781156..2782571 + 471 147673559 rfbL VC0395_A2629 - rfbL protein 2534 42.49 -1 2782580..2783704 + 374 147674827 - VC0395_A2630 - iron-containing alcohol dehydrogenase family protein RfbM 2535 42.37 -1 2783695..2786172 + 825 147674238 - VC0395_A2631 - acyl protein synthase/acyl-CoA reductase RfbN 2536 38.98 -2 2786242..2786808 + 188 147674271 - VC0395_A2632 - acetyltransferase 2537 44.44 0 2787580..2787705 + 41 147674557 - VC0395_A2634 - rfbqrso22-2 2538 41.34 -1 2787710..2788096 + 128 147673984 - VC0395_A2635 - rfbqrso22-4 2539 31.59 -2 2788493..2789353 + 286 147675431 - VC0395_A2636 - RfbT protein 2540 35.13 -2 2789388..2790500 - 370 147674792 rfbV VC0395_A2637 - lipopolysaccharide biosynthesis protein RfbV 2541 43.57 -1 2790508..2792373 - 621 147674200 rfbU VC0395_A2638 - mannosyl-transferase 2542 44.86 0 2792526..2793497 + 323 147673651 galE-1 VC0395_A2639 - UDP-glucose 4-epimerase 2543 43.78 -1 2793505..2794059 + 184 147673652 - VC0395_A2640 - putative capsule biosynthesis protein 2544 44.44 0 2794046..2794162 + 38 147675523 - VC0395_A2641 - hypothetical protein 2545 55.26 +1 2794202..2795569 + 455 147674075 - VC0395_A2642 - hypothetical protein 2546 49.48 0 2795831..2797069 - 412 147673896 - VC0395_A2643 - hypothetical protein 2547 54.28 +1 2797124..2797696 - 190 147673328 - VC0395_A2644 - hypothetical protein 2548 53.25 +1 2797696..2798619 - 307 147675119 - VC0395_A2645 - D-isomer specific 2-hydroxyacid dehydrogenase family protein 2549 47.98 0 2798612..2799280 + 222 147673759 - VC0395_A2646 - hypothetical protein 2550 41.25 -1 2799643..2800842 + 399 147673168 manA-1 VC0395_A2647 - mannose-6-phosphate isomerase 2551 44.24 0 2800808..2801788 + 326 147675748 - VC0395_A2648 - ROK family protein 2552 53.16 +1 2802136..2803194 - 352 147674782 - VC0395_A2649 - hypothetical protein 2553 47.25 0 2803566..2803838 + 90 147674530 hupA VC0395_A2650 - DNA-binding protein HU 2554 48.56 0 2803884..2804579 + 231 147673918 - VC0395_A2651 - putative lipoprotein 2555 54.65 +1 2804679..2805968 - 429 147673352 purD VC0395_A2652 - phosphoribosylamine--glycine ligase 2556 53.23 +1 2806027..2807619 - 530 147673909 purH VC0395_A2653 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 2557 38.89 -2 2807695..2807874 - 59 147673311 - VC0395_A2654 - hypothetical protein 2558 49.75 0 2807905..2808306 + 133 147674759 zntR VC0395_A2655 - zinc-responsive transcriptional regulator 2559 50.25 0 2808467..2810092 + 541 147674140 - VC0395_A2656 - DNA-binding transcriptional activator CadC 2560 51.35 0 2810790..2812127 + 445 147673579 - VC0395_A2657 - lysine/cadaverine antiporter 2561 50.05 0 2812171..2814372 + 733 147675733 cadA VC0395_A2658 - lysine decarboxylase, inducible 2562 51.41 0 2814490..2816160 - 556 147674450 - VC0395_A2659 - methyl-accepting chemotaxis protein 2563 53.17 +1 2816220..2816345 - 41 147673699 - VC0395_A2660 - hypothetical protein 47.83 MEAN 3.88 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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