version 1.0
Vibrio cholerae O395 chromosome 2, complete sequence - 1..3024069 2742 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2382 50.06 0 2616824..2617660 - 278 147674570 aroE VC0395_A2464 - shikimate 5-dehydrogenase 2383 49.89 0 2617722..2618639 - 305 147674221 hemF VC0395_A2465 - coproporphyrinogen III oxidase 2384 53.62 +1 2618658..2619224 - 188 147673407 - VC0395_A2466 - Sua5/YciO/YrdC family protein 2385 52.67 +1 2619382..2619867 + 161 147675401 purE VC0395_A2467 - phosphoribosylaminoimidazole carboxylase, catalytic subunit 2386 51.23 0 2619871..2621004 + 377 147674298 purK VC0395_A2468 - phosphoribosylaminoimidazole carboxylase ATPase subunit 2387 49.04 0 2621077..2621649 - 190 147673250 - VC0395_A2469 - topoisomerase DNA-binding C4 zinc finger domain-containing protein 2388 46.54 0 2621659..2622135 - 158 147675142 smg VC0395_A2470 - hypothetical protein 2389 51.34 0 2622138..2623253 - 371 147675247 - VC0395_A2471 - Smf/DprA family protein 2390 50.17 0 2623253..2624428 - 391 147674460 - VC0395_A2472 - hypothetical protein 2391 48.04 0 2624520..2625029 + 169 147673376 def VC0395_A2473 - peptide deformylase 2392 51.48 0 2625047..2625994 + 315 147673280 fmt VC0395_A2474 - methionyl-tRNA formyltransferase 2393 54.41 +1 2626026..2627330 + 434 147675284 sun VC0395_A2475 - sun protein 2394 52.14 +1 2627392..2628768 + 458 147674709 trkA VC0395_A2476 - potassium transporter peripheral membrane component 2395 51.31 0 2628780..2630225 + 481 147673732 trkH-1 VC0395_A2477 - potassium uptake protein TrkH 2396 49.92 0 2630138..2630794 + 218 147673517 - VC0395_A2478 - hypothetical protein 2397 47.22 0 2630833..2631480 - 215 147674108 - VC0395_A2479 - putative hemolysin 2398 51.25 0 2631558..2632400 - 280 147674742 - VC0395_A2480 - SpoOM-related protein 2399 52.38 +1 2632634..2632801 + 55 147675047 - VC0395_A2481 - hypothetical protein 2400 42.29 -1 2632898..2633176 + 92 147674269 - VC0395_A2482 - hypothetical protein 2401 49.06 0 2633530..2635017 + 495 147675252 - VC0395_A2483 - FixG-related protein 2402 49.27 0 2635029..2636051 + 340 147674440 - VC0395_A2484 - serine/threonine protein kinase 2403 46.43 0 2636082..2636684 + 200 147673950 tpcG VC0395_A2485 - thiol:disulfide interchange protein 2404 50.06 0 2636761..2637645 - 294 147673368 - VC0395_A2486 - hypothetical protein 2405 53.54 +1 2637735..2639258 - 507 147673660 - VC0395_A2487 - ComM-related protein 2406 55.25 +1 2639792..2641438 + 548 147674818 ilvG VC0395_A2488 - acetolactate synthase 2 catalytic subunit 2407 45.61 0 2641450..2641734 + 94 147674918 ilvM VC0395_A2489 - acetolactate synthase 2 regulatory subunit 2408 53.65 +1 2641725..2642684 + 319 147674119 ilvE VC0395_A2490 - branched-chain amino acid aminotransferase 2409 54.72 +1 2642694..2644535 + 613 147675499 ilvD VC0395_A2491 - dihydroxy-acid dehydratase 2410 52.32 +1 2644539..2646071 + 510 147674902 ilvA VC0395_A2492 - threonine dehydratase 2411 52.09 +1 2646319..2647299 + 326 147674251 - VC0395_A2493 - zinc-binding alcohol dehydrogenase 2412 46.27 0 2647471..2647671 - 66 147673683 - VC0395_A2494 - hypothetical protein 2413 49.00 0 2647792..2648040 + 82 147675469 - VC0395_A2495 - cell developmental protein SirA 2414 47.67 0 2648127..2648384 - 85 147674844 - VC0395_A2496 - hypothetical protein 2415 46.77 0 2648490..2649092 - 200 147674249 - VC0395_A2497 - hypothetical protein 2416 49.95 0 2649385..2650377 + 330 147675392 glyQ VC0395_A2498 - glycyl-tRNA synthetase subunit alpha 2417 52.06 +1 2650392..2652458 + 688 147674732 glyS VC0395_A2499 - glycyl-tRNA synthetase subunit beta 2418 49.88 0 2652777..2654033 + 418 147675432 avtA VC0395_A2500 - valine--pyruvate transaminase 2419 45.66 0 2654121..2654558 - 145 147674571 ibpA VC0395_A2501 - 16 kDa heat shock protein A 2420 43.59 -1 2654834..2654950 - 38 147673844 - VC0395_A2502 - hypothetical protein 2421 49.80 0 2654960..2655451 - 163 147673047 - VC0395_A2503 - hypothetical protein 2422 50.50 0 2655807..2658224 - 805 147673680 gyrB VC0395_A2504 - DNA gyrase subunit B 2423 47.53 0 2658245..2659336 - 363 147675554 recF VC0395_A2505 - recombination protein F 2424 49.77 0 2659354..2660454 - 366 147674757 dnaN VC0395_A2506 - DNA polymerase III subunit beta 2425 50.67 0 2660512..2661930 - 472 147674057 dnaA VC0395_A2507 - chromosomal replication initiation protein 2426 41.86 -1 2661975..2662103 - 42 147674633 - VC0395_A2508 - hypothetical protein 2427 47.52 0 2662227..2662973 + 248 147674023 - VC0395_A2509 - amino acid ABC transporter, periplasmic amino acid-binding protein 2428 50.30 0 2663051..2663722 + 223 147675477 - VC0395_A2510 - amino acid ABC transporter, permease protein 2429 49.32 0 2663719..2664456 + 245 147674831 - VC0395_A2511 - amino acid ABC transporter, ATP-binding protein 2430 50.00 0 2664698..2664835 + 45 147675538 rpmH VC0395_A2512 - 50S ribosomal protein L34 2431 44.82 0 2664848..2665204 + 118 147674882 rnpA VC0395_A2513 - ribonuclease P 2432 49.20 0 2665431..2667056 + 541 147674272 yidC VC0395_A2514 - putative inner membrane protein translocase component YidC 2433 52.90 +1 2667117..2668511 + 464 147673066 trmE VC0395_A2515 - tRNA modification GTPase TrmE 2434 49.66 0 2668521..2668955 + 144 147675132 mioC VC0395_A2516 - flavodoxin 2435 49.79 0 2669430..2671325 + 631 147674621 gidA VC0395_A2517 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 2436 48.03 0 2671325..2671957 + 210 147673868 gidB VC0395_A2518 - glucose-inhibited division protein B 2437 47.55 0 2671972..2672745 + 257 147674665 - VC0395_A2519 - ParA family protein 2438 47.28 0 2672772..2673653 + 293 147675136 - VC0395_A2520 - ParB family protein 2439 46.92 0 2673843..2674232 + 129 147673641 atpI VC0395_A2521 - F0F1 ATP synthase subunit I 2440 44.90 0 2674241..2675053 + 270 147673941 atpB VC0395_A2522 - F0F1 ATP synthase subunit A 2441 47.29 0 2675097..2675354 + 85 147675002 atpE VC0395_A2523 - F0F1 ATP synthase subunit C 2442 44.59 0 2675428..2675898 + 156 147674150 atpF VC0395_A2524 - F0F1 ATP synthase subunit B 2443 46.82 0 2675913..2676446 + 177 147675001 atpH VC0395_A2525 - F0F1 ATP synthase subunit delta 2444 49.42 0 2676460..2678001 + 513 147674668 atpA VC0395_A2526 - F0F1 ATP synthase subunit alpha 2445 47.40 0 2678046..2678912 + 288 147673449 atpG VC0395_A2527 - F0F1 ATP synthase subunit gamma 2446 50.14 0 2678947..2680350 + 467 147674488 atpD VC0395_A2528 - F0F1 ATP synthase subunit beta 2447 51.77 +1 2680369..2680791 + 140 147675059 atpC VC0395_A2529 - F0F1 ATP synthase subunit epsilon 2448 51.25 0 2681038..2682399 + 453 147673330 glmU VC0395_A2530 - bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 2449 50.46 0 2682459..2683661 - 400 162329622 - VC0395_A2531 - inner membrane transport protein YdhC 2450 50.50 0 2683817..2684725 + 302 147674679 - VC0395_A2532 - putative DNA-binding transcriptional regulator 2451 53.35 +1 2684792..2685955 - 387 147674109 fadA VC0395_A2533 - 3-ketoacyl-CoA thiolase 2452 51.20 0 2685981..2688152 - 723 147673120 fadB VC0395_A2534 - multifunctional fatty acid oxidation complex subunit alpha 2453 47.55 0 2688363..2688995 + 210 147673536 - VC0395_A2535 - hypothetical protein 2454 48.90 0 2689015..2690472 + 485 147673487 trkH-2 VC0395_A2536 - potassium uptake protein TrkH 2455 45.90 0 2690495..2691019 + 174 147675629 hemG VC0395_A2537 - protoporphyrinogen oxidase 2456 41.13 -1 2691167..2691307 + 46 147675031 - VC0395_A2538 - hypothetical protein 2457 35.00 -2 2691320..2691439 + 39 147674413 - VC0395_A2539 - hypothetical protein 2458 48.16 0 2697077..2697973 - 298 147674629 ilvY VC0395_A2549 - DNA-binding transcriptional regulator IlvY 2459 47.95 0 2698111..2699595 + 494 147675410 ilvC VC0395_A2550 - ketol-acid reductoisomerase 2460 46.43 0 2699722..2699973 - 83 147674656 - VC0395_A2551 - hypothetical protein 2461 50.14 0 2700090..2703200 - 1036 147674069 - VC0395_A2552 - putative multidrug resistance protein 2462 47.24 0 2703212..2704318 - 368 147673467 - VC0395_A2553 - hypothetical protein 2463 42.38 -1 2704337..2704933 - 198 147675641 - VC0395_A2554 - TetR family transcriptional regulator 2464 48.76 0 2705079..2707094 + 671 147674491 rep VC0395_A2555 - ATP-dependent DNA helicase Rep 2465 50.25 0 2707161..2707568 - 135 147673723 cycB VC0395_A2556 - cytochrome c5 2466 33.33 -2 2708652..2708843 - 63 147673581 - VC0395_A2562 - hypothetical protein 2467 49.88 0 2709203..2710918 + 571 147675747 - VC0395_A2563 - peptide ABC transporter, ATP-binding protein 2468 48.07 0 2710938..2712566 + 542 147674667 - VC0395_A2564 - peptide ABC transporter, periplasmic peptide-binding protein 2469 50.53 0 2712670..2713698 + 342 147674097 - VC0395_A2565 - peptide ABC transporter, permease protein 2470 50.37 0 2713701..2714639 + 312 147673904 - VC0395_A2566 - peptide ABC transporter, permease protein 2471 50.95 0 2714814..2715761 + 315 147673324 - VC0395_A2567 - hypothetical protein 2472 52.65 +1 2715856..2717211 - 451 147675159 gor VC0395_A2568 - glutathione reductase 2473 51.55 0 2717317..2718156 - 279 147674499 - VC0395_A2569 - hypothetical protein 2474 52.23 +1 2718436..2720478 + 680 147673174 prlC VC0395_A2570 - oligopeptidase A 2475 52.99 +1 2720616..2722787 + 723 147675309 uvrD VC0395_A2571 - DNA-dependent helicase II 2476 51.42 0 2723532..2724200 - 222 147675763 - VC0395_A2572 - hypothetical protein 2477 50.06 0 2724275..2725087 - 270 147673771 - VC0395_A2573 - AraC/XylS family transcriptional regulator 2478 55.29 +1 2725235..2727001 - 588 147674349 ggt VC0395_A2574 - gamma-glutamyltranspeptidase 2479 52.15 +1 2727163..2728071 - 302 147673550 rarD VC0395_A2575 - rarD protein 2480 53.35 +1 2728205..2730067 + 620 147673915 recQ VC0395_A2576 - ATP-dependent DNA helicase RecQ 2481 52.67 +1 2730060..2730359 + 99 147673116 - VC0395_A2577 - hypothetical protein 47.83 MEAN 3.88 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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