IslandPathversion 1.0

IslandPath Analysis: Vibrio cholerae O395



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.83 STD DEV: 3.88
Vibrio cholerae O395 chromosome 2, complete sequence - 1..3024069
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2335	 50.16	0	2563376..2566180	-	934	147675220	polI	VC0395_A2409	-	DNA polymerase I
2336	 35.51	-2	2566233..2566370	+	45	147675240	-	VC0395_A2411	-	hypothetical protein
2337	 43.06	-1	2566889..2567320	-	143	147673349	-	VC0395_A2412	-	hypothetical protein
2338	 49.62	0	2567424..2568467	-	347	147673839	hemB	VC0395_A2413	-	delta-aminolevulinic acid dehydratase
2339	 47.41	0	2568454..2568588	+	44	147674917	-	VC0395_A2414	-	hypothetical protein
2340	 45.96	0	2568644..2569411	+	255	147675353	-	VC0395_A2415	-	hypothetical protein
2341	 46.11	0	2570172..2570492	+	106	147674304	glpE	VC0395_A2416	-	thiosulfate sulfurtransferase
2342	 48.32	0	2570499..2571332	+	277	147675060	glpG	VC0395_A2417	-	glpG protein
2343	 51.67	0	2571707..2573686	+	659	147673102	-	VC0395_A2418	-	methyl-accepting chemotaxis protein
2344	 45.74	0	2573806..2574216	-	136	147673890	-	VC0395_A2419	-	flagellar basal body-associated protein FliL-like protein
2345	 46.74	0	2574408..2574959	+	183	147674053	ubiC	VC0395_A2420	-	chorismate--pyruvate lyase
2346	 49.59	0	2574960..2575814	+	284	147674415	ubiA	VC0395_A2421	-	4-hydroxybenzoate octaprenyltransferase
2347	 51.60	0	2575890..2578325	-	811	147675490	plsB	VC0395_A2422	-	glycerol-3-phosphate acyltransferase
2348	 52.06	+1	2578636..2579265	+	209	147674841	lexA	VC0395_A2423	-	LexA repressor
2349	 50.69	0	2579293..2580162	+	289	147674292	-	VC0395_A2424	-	hypothetical protein
2350	 51.21	0	2580233..2581597	+	454	147673709	dinF	VC0395_A2425	-	DNA-damage-inducible protein F
2351	 47.70	0	2581703..2582704	-	333	147673083	yhjA	VC0395_A2426	-	cytochrome c551 peroxidase
2352	 48.47	0	2583016..2583768	-	250	147675120	-	VC0395_A2427	-	hypothetical protein
2353	 52.99	+1	2583857..2584258	-	133	147674846	-	VC0395_A2428	-	sec-independent translocase
2354	 44.58	0	2584262..2584510	-	82	147673969	tatA	VC0395_A2429	-	twin argininte translocase protein A
2355	 49.11	0	2584570..2586204	-	544	147675207	ubiB	VC0395_A2430	-	putative ubiquinone biosynthesis protein UbiB
2356	 50.80	0	2586201..2586824	-	207	147674266	-	VC0395_A2431	-	hypothetical protein
2357	 49.55	0	2586833..2587615	-	260	147675615	ubiE	VC0395_A2432	-	ubiquinone/menaquinone biosynthesis methyltransferase
2358	 50.58	0	2587660..2589201	-	513	147675322	-	VC0395_A2433	-	hypothetical protein
2359	 50.66	0	2589315..2590226	+	303	147674409	-	VC0395_A2435	-	hypothetical protein
2360	 51.88	+1	2590223..2591419	-	398	147673041	-	VC0395_A2434	-	hypothetical protein
2361	 47.53	0	2591552..2591875	-	107	147675199	-	VC0395_A2436	-	universal stress protein UspB
2362	 44.51	0	2591951..2592496	-	181	147673604	ftn	VC0395_A2437	-	ferritin
2363	 48.59	0	2592643..2593068	+	141	147674332	uspA	VC0395_A2438	-	universal stress protein A
2364	 48.31	0	2593125..2594012	+	295	147675313	madN	VC0395_A2439	-	MadN protein
2365	 50.77	0	2594108..2594497	-	129	147674730	-	VC0395_A2440	-	hypothetical protein
2366	 52.22	+1	2594615..2595493	-	292	147674106	-	VC0395_A2441	-	hypothetical protein
2367	 50.11	0	2595460..2597766	-	768	147674064	-	VC0395_A2442	-	sensory box/GGDEF family protein
2368	 45.45	0	2597842..2598303	+	153	147675078	asnC	VC0395_A2443	-	DNA-binding transcriptional regulator AsnC
2369	 46.67	0	2598392..2598676	-	94	147675644	-	VC0395_A2444	-	hypothetical protein
2370	 50.12	0	2598780..2599982	-	400	147675656	-	VC0395_A2445	-	putative multidrug resistance protein
2371	 47.46	0	2600045..2601028	+	327	147673818	-	VC0395_A2446	-	LysR family transcriptional regulator
2372	 50.56	0	2601161..2602954	+	597	147674850	-	VC0395_A2447	-	aminopeptidase P
2373	 47.80	0	2603179..2604291	-	370	147675280	thiH	VC0395_A2448	-	thiamine biosynthesis protein ThiH
2374	 50.45	0	2604288..2605058	-	256	147673594	thiG	VC0395_A2449	-	thiazole synthase
2375	 50.45	0	2605264..2606040	-	258	147674373	thiF	VC0395_A2450	-	adenylyltransferase ThiF
2376	 46.49	0	2606027..2607349	-	440	147674784	thiE	VC0395_A2451	-	thiamine-phosphate pyrophosphorylase
2377	 47.57	0	2607353..2609290	-	645	147675426	thiC	VC0395_A2452	-	thiamine biosynthesis protein ThiC
2378	 43.31	-1	2609542..2609922	-	126	147674489	crcB	VC0395_A2453	-	crcB protein
2379	 39.72	-2	2615691..2615831	-	46	147675145	-	VC0395_A2461	-	hypothetical protein
2380	 47.93	0	2616017..2616571	+	184	147675015	-	VC0395_A2463	-	carbonic anhydrase
2381	 44.93	0	2616552..2616827	-	91	147675777	-	VC0395_A2462	-	hypothetical protein
2382	 50.06	0	2616824..2617660	-	278	147674570	aroE	VC0395_A2464	-	shikimate 5-dehydrogenase
2383	 49.89	0	2617722..2618639	-	305	147674221	hemF	VC0395_A2465	-	coproporphyrinogen III oxidase
2384	 53.62	+1	2618658..2619224	-	188	147673407	-	VC0395_A2466	-	Sua5/YciO/YrdC family protein
2385	 52.67	+1	2619382..2619867	+	161	147675401	purE	VC0395_A2467	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
2386	 51.23	0	2619871..2621004	+	377	147674298	purK	VC0395_A2468	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
2387	 49.04	0	2621077..2621649	-	190	147673250	-	VC0395_A2469	-	topoisomerase DNA-binding C4 zinc finger domain-containing protein
2388	 46.54	0	2621659..2622135	-	158	147675142	smg	VC0395_A2470	-	hypothetical protein
2389	 51.34	0	2622138..2623253	-	371	147675247	-	VC0395_A2471	-	Smf/DprA family protein
2390	 50.17	0	2623253..2624428	-	391	147674460	-	VC0395_A2472	-	hypothetical protein
2391	 48.04	0	2624520..2625029	+	169	147673376	def	VC0395_A2473	-	peptide deformylase
2392	 51.48	0	2625047..2625994	+	315	147673280	fmt	VC0395_A2474	-	methionyl-tRNA formyltransferase
2393	 54.41	+1	2626026..2627330	+	434	147675284	sun	VC0395_A2475	-	sun protein
2394	 52.14	+1	2627392..2628768	+	458	147674709	trkA	VC0395_A2476	-	potassium transporter peripheral membrane component
2395	 51.31	0	2628780..2630225	+	481	147673732	trkH-1	VC0395_A2477	-	potassium uptake protein TrkH
2396	 49.92	0	2630138..2630794	+	218	147673517	-	VC0395_A2478	-	hypothetical protein
2397	 47.22	0	2630833..2631480	-	215	147674108	-	VC0395_A2479	-	putative hemolysin
2398	 51.25	0	2631558..2632400	-	280	147674742	-	VC0395_A2480	-	SpoOM-related protein
2399	 52.38	+1	2632634..2632801	+	55	147675047	-	VC0395_A2481	-	hypothetical protein
2400	 42.29	-1	2632898..2633176	+	92	147674269	-	VC0395_A2482	-	hypothetical protein
2401	 49.06	0	2633530..2635017	+	495	147675252	-	VC0395_A2483	-	FixG-related protein
2402	 49.27	0	2635029..2636051	+	340	147674440	-	VC0395_A2484	-	serine/threonine protein kinase
2403	 46.43	0	2636082..2636684	+	200	147673950	tpcG	VC0395_A2485	-	thiol:disulfide interchange protein
2404	 50.06	0	2636761..2637645	-	294	147673368	-	VC0395_A2486	-	hypothetical protein
2405	 53.54	+1	2637735..2639258	-	507	147673660	-	VC0395_A2487	-	ComM-related protein
2406	 55.25	+1	2639792..2641438	+	548	147674818	ilvG	VC0395_A2488	-	acetolactate synthase 2 catalytic subunit
2407	 45.61	0	2641450..2641734	+	94	147674918	ilvM	VC0395_A2489	-	acetolactate synthase 2 regulatory subunit
2408	 53.65	+1	2641725..2642684	+	319	147674119	ilvE	VC0395_A2490	-	branched-chain amino acid aminotransferase
2409	 54.72	+1	2642694..2644535	+	613	147675499	ilvD	VC0395_A2491	-	dihydroxy-acid dehydratase
2410	 52.32	+1	2644539..2646071	+	510	147674902	ilvA	VC0395_A2492	-	threonine dehydratase
2411	 52.09	+1	2646319..2647299	+	326	147674251	-	VC0395_A2493	-	zinc-binding alcohol dehydrogenase
2412	 46.27	0	2647471..2647671	-	66	147673683	-	VC0395_A2494	-	hypothetical protein
2413	 49.00	0	2647792..2648040	+	82	147675469	-	VC0395_A2495	-	cell developmental protein SirA
2414	 47.67	0	2648127..2648384	-	85	147674844	-	VC0395_A2496	-	hypothetical protein
2415	 46.77	0	2648490..2649092	-	200	147674249	-	VC0395_A2497	-	hypothetical protein
2416	 49.95	0	2649385..2650377	+	330	147675392	glyQ	VC0395_A2498	-	glycyl-tRNA synthetase subunit alpha
2417	 52.06	+1	2650392..2652458	+	688	147674732	glyS	VC0395_A2499	-	glycyl-tRNA synthetase subunit beta
2418	 49.88	0	2652777..2654033	+	418	147675432	avtA	VC0395_A2500	-	valine--pyruvate transaminase
2419	 45.66	0	2654121..2654558	-	145	147674571	ibpA	VC0395_A2501	-	16 kDa heat shock protein A
2420	 43.59	-1	2654834..2654950	-	38	147673844	-	VC0395_A2502	-	hypothetical protein
2421	 49.80	0	2654960..2655451	-	163	147673047	-	VC0395_A2503	-	hypothetical protein
2422	 50.50	0	2655807..2658224	-	805	147673680	gyrB	VC0395_A2504	-	DNA gyrase subunit B
2423	 47.53	0	2658245..2659336	-	363	147675554	recF	VC0395_A2505	-	recombination protein F
2424	 49.77	0	2659354..2660454	-	366	147674757	dnaN	VC0395_A2506	-	DNA polymerase III subunit beta
2425	 50.67	0	2660512..2661930	-	472	147674057	dnaA	VC0395_A2507	-	chromosomal replication initiation protein
2426	 41.86	-1	2661975..2662103	-	42	147674633	-	VC0395_A2508	-	hypothetical protein
2427	 47.52	0	2662227..2662973	+	248	147674023	-	VC0395_A2509	-	amino acid ABC transporter, periplasmic amino acid-binding protein
2428	 50.30	0	2663051..2663722	+	223	147675477	-	VC0395_A2510	-	amino acid ABC transporter, permease protein
2429	 49.32	0	2663719..2664456	+	245	147674831	-	VC0395_A2511	-	amino acid ABC transporter, ATP-binding protein
2430	 50.00	0	2664698..2664835	+	45	147675538	rpmH	VC0395_A2512	-	50S ribosomal protein L34
2431	 44.82	0	2664848..2665204	+	118	147674882	rnpA	VC0395_A2513	-	ribonuclease P
2432	 49.20	0	2665431..2667056	+	541	147674272	yidC	VC0395_A2514	-	putative inner membrane protein translocase component YidC
2433	 52.90	+1	2667117..2668511	+	464	147673066	trmE	VC0395_A2515	-	tRNA modification GTPase TrmE
2434	 49.66	0	2668521..2668955	+	144	147675132	mioC	VC0395_A2516	-	flavodoxin
47.83	MEAN

3.88	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.