version 1.0
Vibrio cholerae O395 chromosome 2, complete sequence - 1..3024069 2742 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2335 50.16 0 2563376..2566180 - 934 147675220 polI VC0395_A2409 - DNA polymerase I 2336 35.51 -2 2566233..2566370 + 45 147675240 - VC0395_A2411 - hypothetical protein 2337 43.06 -1 2566889..2567320 - 143 147673349 - VC0395_A2412 - hypothetical protein 2338 49.62 0 2567424..2568467 - 347 147673839 hemB VC0395_A2413 - delta-aminolevulinic acid dehydratase 2339 47.41 0 2568454..2568588 + 44 147674917 - VC0395_A2414 - hypothetical protein 2340 45.96 0 2568644..2569411 + 255 147675353 - VC0395_A2415 - hypothetical protein 2341 46.11 0 2570172..2570492 + 106 147674304 glpE VC0395_A2416 - thiosulfate sulfurtransferase 2342 48.32 0 2570499..2571332 + 277 147675060 glpG VC0395_A2417 - glpG protein 2343 51.67 0 2571707..2573686 + 659 147673102 - VC0395_A2418 - methyl-accepting chemotaxis protein 2344 45.74 0 2573806..2574216 - 136 147673890 - VC0395_A2419 - flagellar basal body-associated protein FliL-like protein 2345 46.74 0 2574408..2574959 + 183 147674053 ubiC VC0395_A2420 - chorismate--pyruvate lyase 2346 49.59 0 2574960..2575814 + 284 147674415 ubiA VC0395_A2421 - 4-hydroxybenzoate octaprenyltransferase 2347 51.60 0 2575890..2578325 - 811 147675490 plsB VC0395_A2422 - glycerol-3-phosphate acyltransferase 2348 52.06 +1 2578636..2579265 + 209 147674841 lexA VC0395_A2423 - LexA repressor 2349 50.69 0 2579293..2580162 + 289 147674292 - VC0395_A2424 - hypothetical protein 2350 51.21 0 2580233..2581597 + 454 147673709 dinF VC0395_A2425 - DNA-damage-inducible protein F 2351 47.70 0 2581703..2582704 - 333 147673083 yhjA VC0395_A2426 - cytochrome c551 peroxidase 2352 48.47 0 2583016..2583768 - 250 147675120 - VC0395_A2427 - hypothetical protein 2353 52.99 +1 2583857..2584258 - 133 147674846 - VC0395_A2428 - sec-independent translocase 2354 44.58 0 2584262..2584510 - 82 147673969 tatA VC0395_A2429 - twin argininte translocase protein A 2355 49.11 0 2584570..2586204 - 544 147675207 ubiB VC0395_A2430 - putative ubiquinone biosynthesis protein UbiB 2356 50.80 0 2586201..2586824 - 207 147674266 - VC0395_A2431 - hypothetical protein 2357 49.55 0 2586833..2587615 - 260 147675615 ubiE VC0395_A2432 - ubiquinone/menaquinone biosynthesis methyltransferase 2358 50.58 0 2587660..2589201 - 513 147675322 - VC0395_A2433 - hypothetical protein 2359 50.66 0 2589315..2590226 + 303 147674409 - VC0395_A2435 - hypothetical protein 2360 51.88 +1 2590223..2591419 - 398 147673041 - VC0395_A2434 - hypothetical protein 2361 47.53 0 2591552..2591875 - 107 147675199 - VC0395_A2436 - universal stress protein UspB 2362 44.51 0 2591951..2592496 - 181 147673604 ftn VC0395_A2437 - ferritin 2363 48.59 0 2592643..2593068 + 141 147674332 uspA VC0395_A2438 - universal stress protein A 2364 48.31 0 2593125..2594012 + 295 147675313 madN VC0395_A2439 - MadN protein 2365 50.77 0 2594108..2594497 - 129 147674730 - VC0395_A2440 - hypothetical protein 2366 52.22 +1 2594615..2595493 - 292 147674106 - VC0395_A2441 - hypothetical protein 2367 50.11 0 2595460..2597766 - 768 147674064 - VC0395_A2442 - sensory box/GGDEF family protein 2368 45.45 0 2597842..2598303 + 153 147675078 asnC VC0395_A2443 - DNA-binding transcriptional regulator AsnC 2369 46.67 0 2598392..2598676 - 94 147675644 - VC0395_A2444 - hypothetical protein 2370 50.12 0 2598780..2599982 - 400 147675656 - VC0395_A2445 - putative multidrug resistance protein 2371 47.46 0 2600045..2601028 + 327 147673818 - VC0395_A2446 - LysR family transcriptional regulator 2372 50.56 0 2601161..2602954 + 597 147674850 - VC0395_A2447 - aminopeptidase P 2373 47.80 0 2603179..2604291 - 370 147675280 thiH VC0395_A2448 - thiamine biosynthesis protein ThiH 2374 50.45 0 2604288..2605058 - 256 147673594 thiG VC0395_A2449 - thiazole synthase 2375 50.45 0 2605264..2606040 - 258 147674373 thiF VC0395_A2450 - adenylyltransferase ThiF 2376 46.49 0 2606027..2607349 - 440 147674784 thiE VC0395_A2451 - thiamine-phosphate pyrophosphorylase 2377 47.57 0 2607353..2609290 - 645 147675426 thiC VC0395_A2452 - thiamine biosynthesis protein ThiC 2378 43.31 -1 2609542..2609922 - 126 147674489 crcB VC0395_A2453 - crcB protein 2379 39.72 -2 2615691..2615831 - 46 147675145 - VC0395_A2461 - hypothetical protein 2380 47.93 0 2616017..2616571 + 184 147675015 - VC0395_A2463 - carbonic anhydrase 2381 44.93 0 2616552..2616827 - 91 147675777 - VC0395_A2462 - hypothetical protein 2382 50.06 0 2616824..2617660 - 278 147674570 aroE VC0395_A2464 - shikimate 5-dehydrogenase 2383 49.89 0 2617722..2618639 - 305 147674221 hemF VC0395_A2465 - coproporphyrinogen III oxidase 2384 53.62 +1 2618658..2619224 - 188 147673407 - VC0395_A2466 - Sua5/YciO/YrdC family protein 2385 52.67 +1 2619382..2619867 + 161 147675401 purE VC0395_A2467 - phosphoribosylaminoimidazole carboxylase, catalytic subunit 2386 51.23 0 2619871..2621004 + 377 147674298 purK VC0395_A2468 - phosphoribosylaminoimidazole carboxylase ATPase subunit 2387 49.04 0 2621077..2621649 - 190 147673250 - VC0395_A2469 - topoisomerase DNA-binding C4 zinc finger domain-containing protein 2388 46.54 0 2621659..2622135 - 158 147675142 smg VC0395_A2470 - hypothetical protein 2389 51.34 0 2622138..2623253 - 371 147675247 - VC0395_A2471 - Smf/DprA family protein 2390 50.17 0 2623253..2624428 - 391 147674460 - VC0395_A2472 - hypothetical protein 2391 48.04 0 2624520..2625029 + 169 147673376 def VC0395_A2473 - peptide deformylase 2392 51.48 0 2625047..2625994 + 315 147673280 fmt VC0395_A2474 - methionyl-tRNA formyltransferase 2393 54.41 +1 2626026..2627330 + 434 147675284 sun VC0395_A2475 - sun protein 2394 52.14 +1 2627392..2628768 + 458 147674709 trkA VC0395_A2476 - potassium transporter peripheral membrane component 2395 51.31 0 2628780..2630225 + 481 147673732 trkH-1 VC0395_A2477 - potassium uptake protein TrkH 2396 49.92 0 2630138..2630794 + 218 147673517 - VC0395_A2478 - hypothetical protein 2397 47.22 0 2630833..2631480 - 215 147674108 - VC0395_A2479 - putative hemolysin 2398 51.25 0 2631558..2632400 - 280 147674742 - VC0395_A2480 - SpoOM-related protein 2399 52.38 +1 2632634..2632801 + 55 147675047 - VC0395_A2481 - hypothetical protein 2400 42.29 -1 2632898..2633176 + 92 147674269 - VC0395_A2482 - hypothetical protein 2401 49.06 0 2633530..2635017 + 495 147675252 - VC0395_A2483 - FixG-related protein 2402 49.27 0 2635029..2636051 + 340 147674440 - VC0395_A2484 - serine/threonine protein kinase 2403 46.43 0 2636082..2636684 + 200 147673950 tpcG VC0395_A2485 - thiol:disulfide interchange protein 2404 50.06 0 2636761..2637645 - 294 147673368 - VC0395_A2486 - hypothetical protein 2405 53.54 +1 2637735..2639258 - 507 147673660 - VC0395_A2487 - ComM-related protein 2406 55.25 +1 2639792..2641438 + 548 147674818 ilvG VC0395_A2488 - acetolactate synthase 2 catalytic subunit 2407 45.61 0 2641450..2641734 + 94 147674918 ilvM VC0395_A2489 - acetolactate synthase 2 regulatory subunit 2408 53.65 +1 2641725..2642684 + 319 147674119 ilvE VC0395_A2490 - branched-chain amino acid aminotransferase 2409 54.72 +1 2642694..2644535 + 613 147675499 ilvD VC0395_A2491 - dihydroxy-acid dehydratase 2410 52.32 +1 2644539..2646071 + 510 147674902 ilvA VC0395_A2492 - threonine dehydratase 2411 52.09 +1 2646319..2647299 + 326 147674251 - VC0395_A2493 - zinc-binding alcohol dehydrogenase 2412 46.27 0 2647471..2647671 - 66 147673683 - VC0395_A2494 - hypothetical protein 2413 49.00 0 2647792..2648040 + 82 147675469 - VC0395_A2495 - cell developmental protein SirA 2414 47.67 0 2648127..2648384 - 85 147674844 - VC0395_A2496 - hypothetical protein 2415 46.77 0 2648490..2649092 - 200 147674249 - VC0395_A2497 - hypothetical protein 2416 49.95 0 2649385..2650377 + 330 147675392 glyQ VC0395_A2498 - glycyl-tRNA synthetase subunit alpha 2417 52.06 +1 2650392..2652458 + 688 147674732 glyS VC0395_A2499 - glycyl-tRNA synthetase subunit beta 2418 49.88 0 2652777..2654033 + 418 147675432 avtA VC0395_A2500 - valine--pyruvate transaminase 2419 45.66 0 2654121..2654558 - 145 147674571 ibpA VC0395_A2501 - 16 kDa heat shock protein A 2420 43.59 -1 2654834..2654950 - 38 147673844 - VC0395_A2502 - hypothetical protein 2421 49.80 0 2654960..2655451 - 163 147673047 - VC0395_A2503 - hypothetical protein 2422 50.50 0 2655807..2658224 - 805 147673680 gyrB VC0395_A2504 - DNA gyrase subunit B 2423 47.53 0 2658245..2659336 - 363 147675554 recF VC0395_A2505 - recombination protein F 2424 49.77 0 2659354..2660454 - 366 147674757 dnaN VC0395_A2506 - DNA polymerase III subunit beta 2425 50.67 0 2660512..2661930 - 472 147674057 dnaA VC0395_A2507 - chromosomal replication initiation protein 2426 41.86 -1 2661975..2662103 - 42 147674633 - VC0395_A2508 - hypothetical protein 2427 47.52 0 2662227..2662973 + 248 147674023 - VC0395_A2509 - amino acid ABC transporter, periplasmic amino acid-binding protein 2428 50.30 0 2663051..2663722 + 223 147675477 - VC0395_A2510 - amino acid ABC transporter, permease protein 2429 49.32 0 2663719..2664456 + 245 147674831 - VC0395_A2511 - amino acid ABC transporter, ATP-binding protein 2430 50.00 0 2664698..2664835 + 45 147675538 rpmH VC0395_A2512 - 50S ribosomal protein L34 2431 44.82 0 2664848..2665204 + 118 147674882 rnpA VC0395_A2513 - ribonuclease P 2432 49.20 0 2665431..2667056 + 541 147674272 yidC VC0395_A2514 - putative inner membrane protein translocase component YidC 2433 52.90 +1 2667117..2668511 + 464 147673066 trmE VC0395_A2515 - tRNA modification GTPase TrmE 2434 49.66 0 2668521..2668955 + 144 147675132 mioC VC0395_A2516 - flavodoxin 47.83 MEAN 3.88 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.