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Vibrio cholerae O395 chromosome 2, complete sequence - 1..3024069 2742 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2308 48.49 0 2536667..2537893 - 408 147674101 - VC0395_A2383 - hypothetical protein 2309 47.90 0 2537913..2538530 - 205 147675050 rhtB VC0395_A2384 - homoserine/homoserine lactone efflux protein 2310 47.00 0 2538605..2539621 + 338 147675702 lypA VC0395_A2385 - lysophospholipase L2 2311 47.95 0 2539736..2540563 + 275 147675232 - VC0395_A2386 - hypothetical protein 2312 52.43 +1 2540847..2542391 + 514 147673319 - VC0395_A2387 - putative lipoprotein 2313 54.77 +1 2542388..2542984 + 198 147673895 - VC0395_A2388 - hypothetical protein 2314 52.01 +1 2543017..2545506 - 829 147674826 - VC0395_A2389 - GGDEF family protein 2315 52.08 +1 2545616..2546335 - 239 147675542 - VC0395_A2390 - hypothetical protein 2316 51.82 +1 2546338..2547273 - 311 147673673 xerC VC0395_A2391 - site-specific tyrosine recombinase XerC 2317 52.50 +1 2547242..2547940 - 232 147673737 - VC0395_A2392 - hypothetical protein 2318 52.23 +1 2547954..2548784 - 276 147673333 dapF VC0395_A2393 - diaminopimelate epimerase 2319 50.40 0 2548796..2550049 - 417 147674363 lysA VC0395_A2394 - diaminopimelate decarboxylase 2320 41.67 -1 2550082..2550297 - 71 147673485 lppL VC0395_A2395 - lipopeptide 2321 48.57 0 2550274..2550588 + 104 147674100 cyaY VC0395_A2396 - frataxin-like protein 2322 48.82 0 2550694..2553225 - 843 147673490 cyaA VC0395_A2397 - adenylate cyclase 2323 54.19 +1 2553564..2554517 + 317 147675270 hemC VC0395_A2398 - porphobilinogen deaminase 2324 50.32 0 2554563..2555345 + 260 147674713 hemD VC0395_A2399 - uroporphyrinogen-III synthase 2325 52.00 +1 2555329..2556528 + 399 147673752 - VC0395_A2400 - putative uroporphyrin-III C-methyltransferase 2326 50.79 0 2556525..2557721 + 398 147673163 hemY VC0395_A2401 - hemY protein 2327 48.02 0 2557785..2559227 - 480 147675179 hemN VC0395_A2402 - coproporphyrinogen III oxidase 2328 50.00 0 2559312..2559803 - 163 147674399 - VC0395_A2403 - hypothetical protein 2329 51.18 0 2559810..2560358 - 182 147673620 - VC0395_A2404 - hypothetical protein 2330 46.94 0 2560358..2561026 - 222 147675609 - VC0395_A2405 - methyltransferase-related protein 2331 48.66 0 2561198..2561869 - 223 147674795 cycA VC0395_A2406 - cytochrome c4 2332 47.51 0 2561967..2562629 + 220 147674030 - VC0395_A2407 - GTPase EngB 2333 44.44 0 2562979..2563113 - 44 147673278 - VC0395_A2408 - hypothetical protein 2334 54.39 +1 2563310..2563423 + 37 147673233 - VC0395_A2410 - hypothetical protein 2335 50.16 0 2563376..2566180 - 934 147675220 polI VC0395_A2409 - DNA polymerase I 2336 35.51 -2 2566233..2566370 + 45 147675240 - VC0395_A2411 - hypothetical protein 2337 43.06 -1 2566889..2567320 - 143 147673349 - VC0395_A2412 - hypothetical protein 2338 49.62 0 2567424..2568467 - 347 147673839 hemB VC0395_A2413 - delta-aminolevulinic acid dehydratase 2339 47.41 0 2568454..2568588 + 44 147674917 - VC0395_A2414 - hypothetical protein 2340 45.96 0 2568644..2569411 + 255 147675353 - VC0395_A2415 - hypothetical protein 2341 46.11 0 2570172..2570492 + 106 147674304 glpE VC0395_A2416 - thiosulfate sulfurtransferase 2342 48.32 0 2570499..2571332 + 277 147675060 glpG VC0395_A2417 - glpG protein 2343 51.67 0 2571707..2573686 + 659 147673102 - VC0395_A2418 - methyl-accepting chemotaxis protein 2344 45.74 0 2573806..2574216 - 136 147673890 - VC0395_A2419 - flagellar basal body-associated protein FliL-like protein 2345 46.74 0 2574408..2574959 + 183 147674053 ubiC VC0395_A2420 - chorismate--pyruvate lyase 2346 49.59 0 2574960..2575814 + 284 147674415 ubiA VC0395_A2421 - 4-hydroxybenzoate octaprenyltransferase 2347 51.60 0 2575890..2578325 - 811 147675490 plsB VC0395_A2422 - glycerol-3-phosphate acyltransferase 2348 52.06 +1 2578636..2579265 + 209 147674841 lexA VC0395_A2423 - LexA repressor 2349 50.69 0 2579293..2580162 + 289 147674292 - VC0395_A2424 - hypothetical protein 2350 51.21 0 2580233..2581597 + 454 147673709 dinF VC0395_A2425 - DNA-damage-inducible protein F 2351 47.70 0 2581703..2582704 - 333 147673083 yhjA VC0395_A2426 - cytochrome c551 peroxidase 2352 48.47 0 2583016..2583768 - 250 147675120 - VC0395_A2427 - hypothetical protein 2353 52.99 +1 2583857..2584258 - 133 147674846 - VC0395_A2428 - sec-independent translocase 2354 44.58 0 2584262..2584510 - 82 147673969 tatA VC0395_A2429 - twin argininte translocase protein A 2355 49.11 0 2584570..2586204 - 544 147675207 ubiB VC0395_A2430 - putative ubiquinone biosynthesis protein UbiB 2356 50.80 0 2586201..2586824 - 207 147674266 - VC0395_A2431 - hypothetical protein 2357 49.55 0 2586833..2587615 - 260 147675615 ubiE VC0395_A2432 - ubiquinone/menaquinone biosynthesis methyltransferase 2358 50.58 0 2587660..2589201 - 513 147675322 - VC0395_A2433 - hypothetical protein 2359 50.66 0 2589315..2590226 + 303 147674409 - VC0395_A2435 - hypothetical protein 2360 51.88 +1 2590223..2591419 - 398 147673041 - VC0395_A2434 - hypothetical protein 2361 47.53 0 2591552..2591875 - 107 147675199 - VC0395_A2436 - universal stress protein UspB 2362 44.51 0 2591951..2592496 - 181 147673604 ftn VC0395_A2437 - ferritin 2363 48.59 0 2592643..2593068 + 141 147674332 uspA VC0395_A2438 - universal stress protein A 2364 48.31 0 2593125..2594012 + 295 147675313 madN VC0395_A2439 - MadN protein 2365 50.77 0 2594108..2594497 - 129 147674730 - VC0395_A2440 - hypothetical protein 2366 52.22 +1 2594615..2595493 - 292 147674106 - VC0395_A2441 - hypothetical protein 2367 50.11 0 2595460..2597766 - 768 147674064 - VC0395_A2442 - sensory box/GGDEF family protein 2368 45.45 0 2597842..2598303 + 153 147675078 asnC VC0395_A2443 - DNA-binding transcriptional regulator AsnC 2369 46.67 0 2598392..2598676 - 94 147675644 - VC0395_A2444 - hypothetical protein 2370 50.12 0 2598780..2599982 - 400 147675656 - VC0395_A2445 - putative multidrug resistance protein 2371 47.46 0 2600045..2601028 + 327 147673818 - VC0395_A2446 - LysR family transcriptional regulator 2372 50.56 0 2601161..2602954 + 597 147674850 - VC0395_A2447 - aminopeptidase P 2373 47.80 0 2603179..2604291 - 370 147675280 thiH VC0395_A2448 - thiamine biosynthesis protein ThiH 2374 50.45 0 2604288..2605058 - 256 147673594 thiG VC0395_A2449 - thiazole synthase 2375 50.45 0 2605264..2606040 - 258 147674373 thiF VC0395_A2450 - adenylyltransferase ThiF 2376 46.49 0 2606027..2607349 - 440 147674784 thiE VC0395_A2451 - thiamine-phosphate pyrophosphorylase 2377 47.57 0 2607353..2609290 - 645 147675426 thiC VC0395_A2452 - thiamine biosynthesis protein ThiC 2378 43.31 -1 2609542..2609922 - 126 147674489 crcB VC0395_A2453 - crcB protein 2379 39.72 -2 2615691..2615831 - 46 147675145 - VC0395_A2461 - hypothetical protein 2380 47.93 0 2616017..2616571 + 184 147675015 - VC0395_A2463 - carbonic anhydrase 2381 44.93 0 2616552..2616827 - 91 147675777 - VC0395_A2462 - hypothetical protein 2382 50.06 0 2616824..2617660 - 278 147674570 aroE VC0395_A2464 - shikimate 5-dehydrogenase 2383 49.89 0 2617722..2618639 - 305 147674221 hemF VC0395_A2465 - coproporphyrinogen III oxidase 2384 53.62 +1 2618658..2619224 - 188 147673407 - VC0395_A2466 - Sua5/YciO/YrdC family protein 2385 52.67 +1 2619382..2619867 + 161 147675401 purE VC0395_A2467 - phosphoribosylaminoimidazole carboxylase, catalytic subunit 2386 51.23 0 2619871..2621004 + 377 147674298 purK VC0395_A2468 - phosphoribosylaminoimidazole carboxylase ATPase subunit 2387 49.04 0 2621077..2621649 - 190 147673250 - VC0395_A2469 - topoisomerase DNA-binding C4 zinc finger domain-containing protein 2388 46.54 0 2621659..2622135 - 158 147675142 smg VC0395_A2470 - hypothetical protein 2389 51.34 0 2622138..2623253 - 371 147675247 - VC0395_A2471 - Smf/DprA family protein 2390 50.17 0 2623253..2624428 - 391 147674460 - VC0395_A2472 - hypothetical protein 2391 48.04 0 2624520..2625029 + 169 147673376 def VC0395_A2473 - peptide deformylase 2392 51.48 0 2625047..2625994 + 315 147673280 fmt VC0395_A2474 - methionyl-tRNA formyltransferase 2393 54.41 +1 2626026..2627330 + 434 147675284 sun VC0395_A2475 - sun protein 2394 52.14 +1 2627392..2628768 + 458 147674709 trkA VC0395_A2476 - potassium transporter peripheral membrane component 2395 51.31 0 2628780..2630225 + 481 147673732 trkH-1 VC0395_A2477 - potassium uptake protein TrkH 2396 49.92 0 2630138..2630794 + 218 147673517 - VC0395_A2478 - hypothetical protein 2397 47.22 0 2630833..2631480 - 215 147674108 - VC0395_A2479 - putative hemolysin 2398 51.25 0 2631558..2632400 - 280 147674742 - VC0395_A2480 - SpoOM-related protein 2399 52.38 +1 2632634..2632801 + 55 147675047 - VC0395_A2481 - hypothetical protein 2400 42.29 -1 2632898..2633176 + 92 147674269 - VC0395_A2482 - hypothetical protein 2401 49.06 0 2633530..2635017 + 495 147675252 - VC0395_A2483 - FixG-related protein 2402 49.27 0 2635029..2636051 + 340 147674440 - VC0395_A2484 - serine/threonine protein kinase 2403 46.43 0 2636082..2636684 + 200 147673950 tpcG VC0395_A2485 - thiol:disulfide interchange protein 2404 50.06 0 2636761..2637645 - 294 147673368 - VC0395_A2486 - hypothetical protein 2405 53.54 +1 2637735..2639258 - 507 147673660 - VC0395_A2487 - ComM-related protein 2406 55.25 +1 2639792..2641438 + 548 147674818 ilvG VC0395_A2488 - acetolactate synthase 2 catalytic subunit 2407 45.61 0 2641450..2641734 + 94 147674918 ilvM VC0395_A2489 - acetolactate synthase 2 regulatory subunit 47.83 MEAN 3.88 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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