version 1.0
Vibrio cholerae O395 chromosome 2, complete sequence - 1..3024069 2742 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2240 52.25 +1 2454220..2454885 - 221 147674823 epsJ VC0395_A2300 - general secretion pathway protein J 2241 52.26 +1 2454872..2455225 - 117 147675768 epsI VC0395_A2301 - general secretion pathway protein I 2242 51.11 0 2455215..2455799 - 194 147673549 epsH VC0395_A2302 - general secretion pathway protein H 2243 47.85 0 2455833..2456273 - 146 147674515 epsG VC0395_A2303 - general secretion pathway protein G 2244 53.24 +1 2456314..2457534 - 406 147675103 epsF VC0395_A2304 - general secretion pathway protein F 2245 52.58 +1 2457534..2459045 - 503 147673384 epsE VC0395_A2305 - general secretion pathway protein E 2246 49.73 0 2459042..2461066 - 674 147674158 gspD VC0395_A2306 - general secretion pathway protein D 2247 49.78 0 2461112..2462029 - 305 147675412 epsC VC0395_A2307 - general secretion pathway protein C 2248 50.26 0 2462253..2462636 + 127 147675399 - VC0395_A2308 - hypothetical protein 2249 49.61 0 2462655..2463545 + 296 147673226 hslO VC0395_A2309 - Hsp33-like chaperonin 2250 49.17 0 2463882..2465510 + 542 147675058 pckA VC0395_A2310 - phosphoenolpyruvate carboxykinase 2251 50.93 0 2465697..2467583 + 628 147675689 - VC0395_A2311 - hypothetical protein 2252 50.91 0 2467625..2468557 - 310 147675114 - VC0395_A2312 - hypothetical protein 2253 51.03 0 2468624..2469058 - 144 147673087 - VC0395_A2313 - D-tyrosyl-tRNA deacylase 2254 46.20 0 2469076..2469969 - 297 147674039 rbn VC0395_A2314 - ribonuclease BN 2255 49.01 0 2469996..2470550 - 184 147674525 - VC0395_A2315 - hypothetical protein 2256 49.84 0 2470633..2472462 - 609 147675093 typA VC0395_A2316 - GTP-binding protein TypA 2257 43.48 -1 2472670..2472807 + 45 147673488 - VC0395_A2317 - hypothetical protein 2258 48.58 0 2472950..2474359 + 469 147673922 glnA VC0395_A2318 - glutamine synthetase 2259 48.05 0 2474537..2475127 + 196 147675080 - VC0395_A2319 - hypothetical protein 2260 48.83 0 2475260..2476324 + 354 147674817 glnL VC0395_A2320 - nitrogen regulation protein NR(II) 2261 48.61 0 2476328..2477734 + 468 147674381 ntrC VC0395_A2321 - nitrogen regulation protein NR(I) 2262 45.92 0 2477775..2480324 + 849 147673341 - VC0395_A2322 - GGDEF family protein 2263 49.15 0 2480416..2481420 + 334 147675298 add VC0395_A2323 - adenosine deaminase 2264 44.44 0 2493187..2493645 + 152 147675367 - VC0395_A2340 - RNA-binding protein 2265 47.62 0 2493611..2494408 - 265 147673599 murI VC0395_A2339 - glutamate racemase 2266 46.64 0 2494801..2496408 + 535 147674600 - VC0395_A2341 - alkaline serine protease 2267 43.25 -1 2496481..2498316 - 611 147674843 - VC0395_A2342 - TonB-dependent receptor 2268 37.82 -2 2499213..2499368 + 51 147673903 - VC0395_A2343 - hypothetical protein 2269 33.33 -2 2499840..2499977 + 45 147674060 - VC0395_A2344 - hypothetical protein 2270 36.32 -2 2500208..2500675 + 155 147675643 - VC0395_A2346 - hypothetical protein 2271 43.30 -1 2500632..2501474 - 280 147673499 - VC0395_A2345 - transposase 2272 46.38 0 2501523..2501660 - 45 147673830 - VC0395_A2347 - transposase 2273 40.08 -1 2501733..2502221 + 162 147673891 - VC0395_A2348 - hypothetical protein 2274 45.24 0 2502438..2502647 - 69 147673117 - VC0395_A2349 - hypothetical protein 2275 39.81 -2 2502754..2503293 + 179 147675439 - VC0395_A2350 - hypothetical protein 2276 41.82 -1 2503295..2504602 + 435 147674647 - VC0395_A2351 - protein HipA 2277 39.71 -2 2504664..2504867 + 67 147674905 - VC0395_A2352 - hypothetical protein 2278 42.42 -1 2505023..2505385 + 120 147674920 - VC0395_A2353 - hypothetical protein 2279 40.58 -1 2505523..2507220 + 565 147675720 - VC0395_A2354 - hypothetical protein 2280 40.67 -1 2507217..2508593 + 458 147673584 - VC0395_A2355 - hypothetical protein 2281 40.78 -1 2508852..2510663 - 603 147674505 - VC0395_A2356 - hypothetical protein 2282 38.97 -2 2510667..2511908 - 413 147673307 - VC0395_A2357 - hypothetical protein 2283 38.82 -2 2512289..2514112 - 607 147673629 - VC0395_A2358 - hypothetical protein 2284 44.44 0 2514109..2514981 - 290 147674397 orfB VC0395_A2359 - transposase OrfAB, subunit B 2285 43.19 -1 2514978..2515322 - 114 147674790 orfA VC0395_A2360 - transposase OrfAB, subunit A 2286 38.76 -2 2515329..2516267 - 312 147673405 - VC0395_A2361 - hypothetical protein 2287 43.92 -1 2516604..2517170 - 188 147675219 - VC0395_A2362 - DNA-invertase 2288 39.85 -2 2517353..2517889 - 178 147674449 - VC0395_A2363 - hypothetical protein 2289 39.27 -2 2517893..2520082 - 729 147674376 - VC0395_A2364 - site-specific recombinase, phage integrase family protein 2290 40.57 -1 2520094..2522553 - 819 147675616 - VC0395_A2365 - hypothetical protein 2291 40.71 -1 2522558..2523967 - 469 147674930 - VC0395_A2366 - MutL protein 2292 47.84 0 2524317..2525426 + 369 147674711 trmA VC0395_A2367 - tRNA (uracil-5-)-methyltransferase 2293 48.12 0 2525463..2525834 - 123 147673456 - VC0395_A2368 - hypothetical protein 2294 51.87 +1 2525874..2526515 - 213 147675303 - VC0395_A2369 - DNA-binding transcriptional repressor FabR 2295 49.39 0 2526823..2528223 + 466 147674666 - VC0395_A2370 - soluble pyridine nucleotide transhydrogenase 2296 49.94 0 2528425..2529285 - 286 147674371 rpoH VC0395_A2371 - RNA polymerase factor sigma-32 2297 48.74 0 2529455..2530447 - 330 147675580 ftsX VC0395_A2372 - cell division protein FtsX 2298 50.85 0 2530437..2531138 - 233 147675112 ftsE VC0395_A2373 - cell division ATP-binding protein FtsE 2299 49.83 0 2531160..2532323 - 387 147673157 ftsY VC0395_A2374 - signal recognition particle-docking protein FtsY 2300 49.83 0 2532527..2533126 + 199 147674236 - VC0395_A2375 - hypothetical protein 2301 44.57 0 2533123..2533389 + 88 147674467 - VC0395_A2376 - hypothetical protein 2302 48.41 0 2533438..2534067 - 209 147675359 - VC0395_A2377 - hypothetical protein 2303 27.01 -2 2534184..2534357 - 57 147673177 - VC0395_A2378 - hypothetical protein 2304 43.09 -1 2534945..2535313 - 122 147673461 - VC0395_A2379 - hypothetical protein 2305 45.45 0 2535518..2535847 + 109 147674059 - VC0395_A2380 - hypothetical protein 2306 46.28 0 2536017..2536487 + 156 147674470 - VC0395_A2381 - DPS family protein 2307 54.17 +1 2536540..2536659 + 39 147673473 - VC0395_A2382 - hypothetical protein 2308 48.49 0 2536667..2537893 - 408 147674101 - VC0395_A2383 - hypothetical protein 2309 47.90 0 2537913..2538530 - 205 147675050 rhtB VC0395_A2384 - homoserine/homoserine lactone efflux protein 2310 47.00 0 2538605..2539621 + 338 147675702 lypA VC0395_A2385 - lysophospholipase L2 2311 47.95 0 2539736..2540563 + 275 147675232 - VC0395_A2386 - hypothetical protein 2312 52.43 +1 2540847..2542391 + 514 147673319 - VC0395_A2387 - putative lipoprotein 2313 54.77 +1 2542388..2542984 + 198 147673895 - VC0395_A2388 - hypothetical protein 2314 52.01 +1 2543017..2545506 - 829 147674826 - VC0395_A2389 - GGDEF family protein 2315 52.08 +1 2545616..2546335 - 239 147675542 - VC0395_A2390 - hypothetical protein 2316 51.82 +1 2546338..2547273 - 311 147673673 xerC VC0395_A2391 - site-specific tyrosine recombinase XerC 2317 52.50 +1 2547242..2547940 - 232 147673737 - VC0395_A2392 - hypothetical protein 2318 52.23 +1 2547954..2548784 - 276 147673333 dapF VC0395_A2393 - diaminopimelate epimerase 2319 50.40 0 2548796..2550049 - 417 147674363 lysA VC0395_A2394 - diaminopimelate decarboxylase 2320 41.67 -1 2550082..2550297 - 71 147673485 lppL VC0395_A2395 - lipopeptide 2321 48.57 0 2550274..2550588 + 104 147674100 cyaY VC0395_A2396 - frataxin-like protein 2322 48.82 0 2550694..2553225 - 843 147673490 cyaA VC0395_A2397 - adenylate cyclase 2323 54.19 +1 2553564..2554517 + 317 147675270 hemC VC0395_A2398 - porphobilinogen deaminase 2324 50.32 0 2554563..2555345 + 260 147674713 hemD VC0395_A2399 - uroporphyrinogen-III synthase 2325 52.00 +1 2555329..2556528 + 399 147673752 - VC0395_A2400 - putative uroporphyrin-III C-methyltransferase 2326 50.79 0 2556525..2557721 + 398 147673163 hemY VC0395_A2401 - hemY protein 2327 48.02 0 2557785..2559227 - 480 147675179 hemN VC0395_A2402 - coproporphyrinogen III oxidase 2328 50.00 0 2559312..2559803 - 163 147674399 - VC0395_A2403 - hypothetical protein 2329 51.18 0 2559810..2560358 - 182 147673620 - VC0395_A2404 - hypothetical protein 2330 46.94 0 2560358..2561026 - 222 147675609 - VC0395_A2405 - methyltransferase-related protein 2331 48.66 0 2561198..2561869 - 223 147674795 cycA VC0395_A2406 - cytochrome c4 2332 47.51 0 2561967..2562629 + 220 147674030 - VC0395_A2407 - GTPase EngB 2333 44.44 0 2562979..2563113 - 44 147673278 - VC0395_A2408 - hypothetical protein 2334 54.39 +1 2563310..2563423 + 37 147673233 - VC0395_A2410 - hypothetical protein 2335 50.16 0 2563376..2566180 - 934 147675220 polI VC0395_A2409 - DNA polymerase I 2336 35.51 -2 2566233..2566370 + 45 147675240 - VC0395_A2411 - hypothetical protein 2337 43.06 -1 2566889..2567320 - 143 147673349 - VC0395_A2412 - hypothetical protein 2338 49.62 0 2567424..2568467 - 347 147673839 hemB VC0395_A2413 - delta-aminolevulinic acid dehydratase 2339 47.41 0 2568454..2568588 + 44 147674917 - VC0395_A2414 - hypothetical protein 47.83 MEAN 3.88 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0