version 1.0
Vibrio cholerae O395 chromosome 2, complete sequence - 1..3024069 2742 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2208 51.78 +1 2416561..2417037 + 158 147674422 - VC0395_A2267 - rRNA methylase 2209 52.26 +1 2417071..2417556 - 161 147675670 fxsA VC0395_A2268 - FxsA 2210 49.20 0 2417648..2418586 - 312 147673258 - VC0395_A2269 - GGDEF family protein 2211 48.21 0 2418831..2420282 + 483 147675095 aspA VC0395_A2270 - aspartate ammonia-lyase 2212 52.45 +1 2420410..2421717 + 435 162329619 dcuA VC0395_A2271 - anaerobic C4-dicarboxylate transporter 2213 51.24 0 2422111..2423601 + 496 147674664 - VC0395_A2272 - type II secretory pathway protein 2214 49.95 0 2423598..2425751 + 717 147674082 - VC0395_A2273 - pullulanase 2215 52.02 +1 2425869..2427671 + 600 147673525 dipZ VC0395_A2274 - thiol:disulfide interchange protein precursor 2216 50.00 0 2427844..2428473 + 209 147675562 - VC0395_A2275 - LuxR family transcriptional regulator 2217 52.00 +1 2428572..2430317 - 581 147674945 - VC0395_A2276 - potassium/proton antiporter 2218 45.69 0 2430696..2430962 + 88 147673948 - VC0395_A2277 - hypothetical protein 2219 51.94 +1 2430973..2432676 + 567 147673339 - VC0395_A2278 - putative sodium/solute symporter 2220 47.92 0 2432774..2433445 - 223 147674537 - VC0395_A2279 - hypothetical protein 2221 46.23 0 2433747..2434436 + 229 147674080 gmk VC0395_A2280 - guanylate kinase 2222 52.01 +1 2434544..2434816 + 90 147673462 rpoZ VC0395_A2281 - DNA-directed RNA polymerase subunit omega 2223 52.36 +1 2434848..2436965 + 705 147675346 spoT VC0395_A2282 - bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 2224 53.29 +1 2437084..2439162 + 692 147674684 recG VC0395_A2283 - ATP-dependent DNA helicase RecG 2225 51.32 0 2439507..2440907 + 466 147673726 - VC0395_A2284 - xanthine/uracil permease family protein 2226 50.57 0 2440932..2442248 - 438 147673138 envZ VC0395_A2285 - osmolarity sensor protein 2227 51.18 0 2442317..2443039 - 240 147673571 ompR VC0395_A2286 - osmolarity response regulator 2228 48.77 0 2443177..2443662 - 161 147675721 greB VC0395_A2287 - transcription elongation factor GreB 2229 53.92 +1 2443907..2446228 + 773 147674924 - VC0395_A2288 - hypothetical protein 2230 54.22 +1 2446320..2446817 - 165 147674208 - VC0395_A2289 - hypothetical protein 2231 54.28 +1 2446952..2447758 - 268 147674258 bioH VC0395_A2290 - bioH protein 2232 53.77 +1 2447649..2448509 + 286 147675590 - VC0395_A2292 - ComF family protein 2233 51.36 0 2448597..2449184 + 195 147674569 - VC0395_A2293 - putative DNA uptake protein 2234 47.80 0 2449257..2449871 + 204 147674005 nudE VC0395_A2294 - ADP-ribose diphosphatase NudE 2235 52.66 +1 2449894..2450721 + 275 147673042 cysQ VC0395_A2295 - cysQ protein 2236 54.15 +1 2450773..2451531 - 252 147675210 epsN VC0395_A2296 - general secretion pathway protein N 2237 52.89 +1 2451533..2452033 - 166 147674283 epsM VC0395_A2297 - cholera toxin secretion protein EpsM 2238 51.16 0 2452040..2453251 - 403 147673681 epsL VC0395_A2298 - general secretion pathway protein L 2239 52.32 +1 2453220..2454230 - 336 147675385 epsK VC0395_A2299 - general secretion pathway protein K 2240 52.25 +1 2454220..2454885 - 221 147674823 epsJ VC0395_A2300 - general secretion pathway protein J 2241 52.26 +1 2454872..2455225 - 117 147675768 epsI VC0395_A2301 - general secretion pathway protein I 2242 51.11 0 2455215..2455799 - 194 147673549 epsH VC0395_A2302 - general secretion pathway protein H 2243 47.85 0 2455833..2456273 - 146 147674515 epsG VC0395_A2303 - general secretion pathway protein G 2244 53.24 +1 2456314..2457534 - 406 147675103 epsF VC0395_A2304 - general secretion pathway protein F 2245 52.58 +1 2457534..2459045 - 503 147673384 epsE VC0395_A2305 - general secretion pathway protein E 2246 49.73 0 2459042..2461066 - 674 147674158 gspD VC0395_A2306 - general secretion pathway protein D 2247 49.78 0 2461112..2462029 - 305 147675412 epsC VC0395_A2307 - general secretion pathway protein C 2248 50.26 0 2462253..2462636 + 127 147675399 - VC0395_A2308 - hypothetical protein 2249 49.61 0 2462655..2463545 + 296 147673226 hslO VC0395_A2309 - Hsp33-like chaperonin 2250 49.17 0 2463882..2465510 + 542 147675058 pckA VC0395_A2310 - phosphoenolpyruvate carboxykinase 2251 50.93 0 2465697..2467583 + 628 147675689 - VC0395_A2311 - hypothetical protein 2252 50.91 0 2467625..2468557 - 310 147675114 - VC0395_A2312 - hypothetical protein 2253 51.03 0 2468624..2469058 - 144 147673087 - VC0395_A2313 - D-tyrosyl-tRNA deacylase 2254 46.20 0 2469076..2469969 - 297 147674039 rbn VC0395_A2314 - ribonuclease BN 2255 49.01 0 2469996..2470550 - 184 147674525 - VC0395_A2315 - hypothetical protein 2256 49.84 0 2470633..2472462 - 609 147675093 typA VC0395_A2316 - GTP-binding protein TypA 2257 43.48 -1 2472670..2472807 + 45 147673488 - VC0395_A2317 - hypothetical protein 2258 48.58 0 2472950..2474359 + 469 147673922 glnA VC0395_A2318 - glutamine synthetase 2259 48.05 0 2474537..2475127 + 196 147675080 - VC0395_A2319 - hypothetical protein 2260 48.83 0 2475260..2476324 + 354 147674817 glnL VC0395_A2320 - nitrogen regulation protein NR(II) 2261 48.61 0 2476328..2477734 + 468 147674381 ntrC VC0395_A2321 - nitrogen regulation protein NR(I) 2262 45.92 0 2477775..2480324 + 849 147673341 - VC0395_A2322 - GGDEF family protein 2263 49.15 0 2480416..2481420 + 334 147675298 add VC0395_A2323 - adenosine deaminase 2264 44.44 0 2493187..2493645 + 152 147675367 - VC0395_A2340 - RNA-binding protein 2265 47.62 0 2493611..2494408 - 265 147673599 murI VC0395_A2339 - glutamate racemase 2266 46.64 0 2494801..2496408 + 535 147674600 - VC0395_A2341 - alkaline serine protease 2267 43.25 -1 2496481..2498316 - 611 147674843 - VC0395_A2342 - TonB-dependent receptor 2268 37.82 -2 2499213..2499368 + 51 147673903 - VC0395_A2343 - hypothetical protein 2269 33.33 -2 2499840..2499977 + 45 147674060 - VC0395_A2344 - hypothetical protein 2270 36.32 -2 2500208..2500675 + 155 147675643 - VC0395_A2346 - hypothetical protein 2271 43.30 -1 2500632..2501474 - 280 147673499 - VC0395_A2345 - transposase 2272 46.38 0 2501523..2501660 - 45 147673830 - VC0395_A2347 - transposase 2273 40.08 -1 2501733..2502221 + 162 147673891 - VC0395_A2348 - hypothetical protein 2274 45.24 0 2502438..2502647 - 69 147673117 - VC0395_A2349 - hypothetical protein 2275 39.81 -2 2502754..2503293 + 179 147675439 - VC0395_A2350 - hypothetical protein 2276 41.82 -1 2503295..2504602 + 435 147674647 - VC0395_A2351 - protein HipA 2277 39.71 -2 2504664..2504867 + 67 147674905 - VC0395_A2352 - hypothetical protein 2278 42.42 -1 2505023..2505385 + 120 147674920 - VC0395_A2353 - hypothetical protein 2279 40.58 -1 2505523..2507220 + 565 147675720 - VC0395_A2354 - hypothetical protein 2280 40.67 -1 2507217..2508593 + 458 147673584 - VC0395_A2355 - hypothetical protein 2281 40.78 -1 2508852..2510663 - 603 147674505 - VC0395_A2356 - hypothetical protein 2282 38.97 -2 2510667..2511908 - 413 147673307 - VC0395_A2357 - hypothetical protein 2283 38.82 -2 2512289..2514112 - 607 147673629 - VC0395_A2358 - hypothetical protein 2284 44.44 0 2514109..2514981 - 290 147674397 orfB VC0395_A2359 - transposase OrfAB, subunit B 2285 43.19 -1 2514978..2515322 - 114 147674790 orfA VC0395_A2360 - transposase OrfAB, subunit A 2286 38.76 -2 2515329..2516267 - 312 147673405 - VC0395_A2361 - hypothetical protein 2287 43.92 -1 2516604..2517170 - 188 147675219 - VC0395_A2362 - DNA-invertase 2288 39.85 -2 2517353..2517889 - 178 147674449 - VC0395_A2363 - hypothetical protein 2289 39.27 -2 2517893..2520082 - 729 147674376 - VC0395_A2364 - site-specific recombinase, phage integrase family protein 2290 40.57 -1 2520094..2522553 - 819 147675616 - VC0395_A2365 - hypothetical protein 2291 40.71 -1 2522558..2523967 - 469 147674930 - VC0395_A2366 - MutL protein 2292 47.84 0 2524317..2525426 + 369 147674711 trmA VC0395_A2367 - tRNA (uracil-5-)-methyltransferase 2293 48.12 0 2525463..2525834 - 123 147673456 - VC0395_A2368 - hypothetical protein 2294 51.87 +1 2525874..2526515 - 213 147675303 - VC0395_A2369 - DNA-binding transcriptional repressor FabR 2295 49.39 0 2526823..2528223 + 466 147674666 - VC0395_A2370 - soluble pyridine nucleotide transhydrogenase 2296 49.94 0 2528425..2529285 - 286 147674371 rpoH VC0395_A2371 - RNA polymerase factor sigma-32 2297 48.74 0 2529455..2530447 - 330 147675580 ftsX VC0395_A2372 - cell division protein FtsX 2298 50.85 0 2530437..2531138 - 233 147675112 ftsE VC0395_A2373 - cell division ATP-binding protein FtsE 2299 49.83 0 2531160..2532323 - 387 147673157 ftsY VC0395_A2374 - signal recognition particle-docking protein FtsY 2300 49.83 0 2532527..2533126 + 199 147674236 - VC0395_A2375 - hypothetical protein 2301 44.57 0 2533123..2533389 + 88 147674467 - VC0395_A2376 - hypothetical protein 2302 48.41 0 2533438..2534067 - 209 147675359 - VC0395_A2377 - hypothetical protein 2303 27.01 -2 2534184..2534357 - 57 147673177 - VC0395_A2378 - hypothetical protein 2304 43.09 -1 2534945..2535313 - 122 147673461 - VC0395_A2379 - hypothetical protein 2305 45.45 0 2535518..2535847 + 109 147674059 - VC0395_A2380 - hypothetical protein 2306 46.28 0 2536017..2536487 + 156 147674470 - VC0395_A2381 - DPS family protein 2307 54.17 +1 2536540..2536659 + 39 147673473 - VC0395_A2382 - hypothetical protein 47.83 MEAN 3.88 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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