version 1.0
Vibrio cholerae O395 chromosome 2, complete sequence - 1..3024069 2742 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2172 49.67 0 2382432..2383190 + 252 147673358 frdB VC0395_A2231 - fumarate reductase iron-sulfur subunit 2173 48.18 0 2383193..2383576 + 127 147674812 frdC VC0395_A2232 - fumarate reductase subunit C 2174 50.41 0 2383587..2383949 + 120 147674506 frdD VC0395_A2233 - fumarate reductase subunit D 2175 47.44 0 2384063..2384629 - 188 147673907 efp VC0395_A2234 - elongation factor P 2176 48.88 0 2384662..2385684 + 340 147674649 - VC0395_A2235 - hypothetical protein 2177 45.66 0 2385721..2386296 - 191 147673873 - VC0395_A2236 - hypothetical protein 2178 52.11 +1 2386492..2388126 - 544 147675528 groEL VC0395_A2237 - chaperonin GroEL 2179 44.67 0 2388180..2388470 - 96 147675387 groES VC0395_A2238 - co-chaperonin GroES 2180 50.97 0 2388830..2389447 + 205 147674315 - VC0395_A2239 - hypothetical protein 2181 52.22 +1 2389586..2389945 + 119 147674722 - VC0395_A2240 - hypothetical protein 2182 49.66 0 2390072..2390512 - 146 147674718 - VC0395_A2241 - hypothetical protein 2183 46.44 0 2390532..2390882 - 116 147675135 - VC0395_A2242 - putative 5-carboxymethyl-2-hydroxymuconate delta isomerase 2184 50.75 0 2391102..2391899 + 265 147673165 tpiA VC0395_A2243 - triosephosphate isomerase 2185 52.21 +1 2392017..2393399 + 460 147674936 - VC0395_A2244 - hypothetical protein 2186 50.00 0 2393486..2394001 - 171 147674928 - VC0395_A2245 - ribonuclease activity regulator protein RraA 2187 49.67 0 2394076..2394993 - 305 147675764 menA VC0395_A2246 - 1,4-dihydroxy-2-naphthoate octaprenyltransferase 2188 50.38 0 2395097..2396428 - 443 147673421 hslU VC0395_A2247 - ATP-dependent protease ATP-binding subunit 2189 51.43 0 2396494..2397051 - 185 147674179 hslV VC0395_A2248 - ATP-dependent protease peptidase subunit 2190 51.99 +1 2397188..2397739 - 183 147673934 - VC0395_A2249 - putative cell division protein FtsN 2191 52.48 +1 2397911..2398918 - 335 147674191 - VC0395_A2250 - DNA-binding transcriptional regulator CytR 2192 52.65 +1 2399224..2401428 - 734 147674045 priA VC0395_A2251 - primosome assembly protein PriA 2193 47.03 0 2401683..2401901 + 72 147674481 rpmE VC0395_A2252 - 50S ribosomal protein L31 2194 38.89 -2 2401999..2402142 + 47 147674955 - VC0395_A2253 - hypothetical protein 2195 51.25 0 2402209..2403486 + 425 147675732 - VC0395_A2254 - putative malate dehydrogenase 2196 47.80 0 2403597..2403914 - 105 147674382 metJ VC0395_A2255 - transcriptional repressor protein MetJ 2197 50.39 0 2404182..2405348 + 388 147674853 metB VC0395_A2256 - cystathionine gamma-synthase 2198 52.16 +1 2405361..2407772 + 803 147675299 metL VC0395_A2257 - bifunctional aspartate kinase II/homoserine dehydrogenase II 2199 50.38 0 2408032..2408946 + 304 147673318 metF VC0395_A2258 - 5,10-methylenetetrahydrofolate reductase 2200 46.91 0 2409009..2409251 - 80 147675567 - VC0395_A2259 - hypothetical protein 2201 52.88 +1 2409572..2410579 + 335 147674937 glpX VC0395_A2260 - fructose 1,6-bisphosphatase II 2202 49.30 0 2410656..2411651 - 331 147673340 pfkA VC0395_A2261 - 6-phosphofructokinase 2203 51.49 0 2411881..2412789 - 302 147673451 fieF VC0395_A2262 - ferrous iron efflux protein F 2204 51.39 0 2412987..2413490 - 167 147674434 cpxP VC0395_A2263 - periplasmic repressor CpxP 2205 51.53 0 2413678..2414364 + 228 147675245 cpxR VC0395_A2264 - transcriptional regulator CpxR 2206 51.11 0 2414364..2415758 + 464 147673577 cpxA VC0395_A2265 - two-component sensor protein 2207 51.27 0 2415840..2416508 + 222 147674162 sodA VC0395_A2266 - superoxide dismutase, Mn 2208 51.78 +1 2416561..2417037 + 158 147674422 - VC0395_A2267 - rRNA methylase 2209 52.26 +1 2417071..2417556 - 161 147675670 fxsA VC0395_A2268 - FxsA 2210 49.20 0 2417648..2418586 - 312 147673258 - VC0395_A2269 - GGDEF family protein 2211 48.21 0 2418831..2420282 + 483 147675095 aspA VC0395_A2270 - aspartate ammonia-lyase 2212 52.45 +1 2420410..2421717 + 435 162329619 dcuA VC0395_A2271 - anaerobic C4-dicarboxylate transporter 2213 51.24 0 2422111..2423601 + 496 147674664 - VC0395_A2272 - type II secretory pathway protein 2214 49.95 0 2423598..2425751 + 717 147674082 - VC0395_A2273 - pullulanase 2215 52.02 +1 2425869..2427671 + 600 147673525 dipZ VC0395_A2274 - thiol:disulfide interchange protein precursor 2216 50.00 0 2427844..2428473 + 209 147675562 - VC0395_A2275 - LuxR family transcriptional regulator 2217 52.00 +1 2428572..2430317 - 581 147674945 - VC0395_A2276 - potassium/proton antiporter 2218 45.69 0 2430696..2430962 + 88 147673948 - VC0395_A2277 - hypothetical protein 2219 51.94 +1 2430973..2432676 + 567 147673339 - VC0395_A2278 - putative sodium/solute symporter 2220 47.92 0 2432774..2433445 - 223 147674537 - VC0395_A2279 - hypothetical protein 2221 46.23 0 2433747..2434436 + 229 147674080 gmk VC0395_A2280 - guanylate kinase 2222 52.01 +1 2434544..2434816 + 90 147673462 rpoZ VC0395_A2281 - DNA-directed RNA polymerase subunit omega 2223 52.36 +1 2434848..2436965 + 705 147675346 spoT VC0395_A2282 - bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 2224 53.29 +1 2437084..2439162 + 692 147674684 recG VC0395_A2283 - ATP-dependent DNA helicase RecG 2225 51.32 0 2439507..2440907 + 466 147673726 - VC0395_A2284 - xanthine/uracil permease family protein 2226 50.57 0 2440932..2442248 - 438 147673138 envZ VC0395_A2285 - osmolarity sensor protein 2227 51.18 0 2442317..2443039 - 240 147673571 ompR VC0395_A2286 - osmolarity response regulator 2228 48.77 0 2443177..2443662 - 161 147675721 greB VC0395_A2287 - transcription elongation factor GreB 2229 53.92 +1 2443907..2446228 + 773 147674924 - VC0395_A2288 - hypothetical protein 2230 54.22 +1 2446320..2446817 - 165 147674208 - VC0395_A2289 - hypothetical protein 2231 54.28 +1 2446952..2447758 - 268 147674258 bioH VC0395_A2290 - bioH protein 2232 53.77 +1 2447649..2448509 + 286 147675590 - VC0395_A2292 - ComF family protein 2233 51.36 0 2448597..2449184 + 195 147674569 - VC0395_A2293 - putative DNA uptake protein 2234 47.80 0 2449257..2449871 + 204 147674005 nudE VC0395_A2294 - ADP-ribose diphosphatase NudE 2235 52.66 +1 2449894..2450721 + 275 147673042 cysQ VC0395_A2295 - cysQ protein 2236 54.15 +1 2450773..2451531 - 252 147675210 epsN VC0395_A2296 - general secretion pathway protein N 2237 52.89 +1 2451533..2452033 - 166 147674283 epsM VC0395_A2297 - cholera toxin secretion protein EpsM 2238 51.16 0 2452040..2453251 - 403 147673681 epsL VC0395_A2298 - general secretion pathway protein L 2239 52.32 +1 2453220..2454230 - 336 147675385 epsK VC0395_A2299 - general secretion pathway protein K 2240 52.25 +1 2454220..2454885 - 221 147674823 epsJ VC0395_A2300 - general secretion pathway protein J 2241 52.26 +1 2454872..2455225 - 117 147675768 epsI VC0395_A2301 - general secretion pathway protein I 2242 51.11 0 2455215..2455799 - 194 147673549 epsH VC0395_A2302 - general secretion pathway protein H 2243 47.85 0 2455833..2456273 - 146 147674515 epsG VC0395_A2303 - general secretion pathway protein G 2244 53.24 +1 2456314..2457534 - 406 147675103 epsF VC0395_A2304 - general secretion pathway protein F 2245 52.58 +1 2457534..2459045 - 503 147673384 epsE VC0395_A2305 - general secretion pathway protein E 2246 49.73 0 2459042..2461066 - 674 147674158 gspD VC0395_A2306 - general secretion pathway protein D 2247 49.78 0 2461112..2462029 - 305 147675412 epsC VC0395_A2307 - general secretion pathway protein C 2248 50.26 0 2462253..2462636 + 127 147675399 - VC0395_A2308 - hypothetical protein 2249 49.61 0 2462655..2463545 + 296 147673226 hslO VC0395_A2309 - Hsp33-like chaperonin 2250 49.17 0 2463882..2465510 + 542 147675058 pckA VC0395_A2310 - phosphoenolpyruvate carboxykinase 2251 50.93 0 2465697..2467583 + 628 147675689 - VC0395_A2311 - hypothetical protein 2252 50.91 0 2467625..2468557 - 310 147675114 - VC0395_A2312 - hypothetical protein 2253 51.03 0 2468624..2469058 - 144 147673087 - VC0395_A2313 - D-tyrosyl-tRNA deacylase 2254 46.20 0 2469076..2469969 - 297 147674039 rbn VC0395_A2314 - ribonuclease BN 2255 49.01 0 2469996..2470550 - 184 147674525 - VC0395_A2315 - hypothetical protein 2256 49.84 0 2470633..2472462 - 609 147675093 typA VC0395_A2316 - GTP-binding protein TypA 2257 43.48 -1 2472670..2472807 + 45 147673488 - VC0395_A2317 - hypothetical protein 2258 48.58 0 2472950..2474359 + 469 147673922 glnA VC0395_A2318 - glutamine synthetase 2259 48.05 0 2474537..2475127 + 196 147675080 - VC0395_A2319 - hypothetical protein 2260 48.83 0 2475260..2476324 + 354 147674817 glnL VC0395_A2320 - nitrogen regulation protein NR(II) 2261 48.61 0 2476328..2477734 + 468 147674381 ntrC VC0395_A2321 - nitrogen regulation protein NR(I) 2262 45.92 0 2477775..2480324 + 849 147673341 - VC0395_A2322 - GGDEF family protein 2263 49.15 0 2480416..2481420 + 334 147675298 add VC0395_A2323 - adenosine deaminase 2264 44.44 0 2493187..2493645 + 152 147675367 - VC0395_A2340 - RNA-binding protein 2265 47.62 0 2493611..2494408 - 265 147673599 murI VC0395_A2339 - glutamate racemase 2266 46.64 0 2494801..2496408 + 535 147674600 - VC0395_A2341 - alkaline serine protease 2267 43.25 -1 2496481..2498316 - 611 147674843 - VC0395_A2342 - TonB-dependent receptor 2268 37.82 -2 2499213..2499368 + 51 147673903 - VC0395_A2343 - hypothetical protein 2269 33.33 -2 2499840..2499977 + 45 147674060 - VC0395_A2344 - hypothetical protein 2270 36.32 -2 2500208..2500675 + 155 147675643 - VC0395_A2346 - hypothetical protein 2271 43.30 -1 2500632..2501474 - 280 147673499 - VC0395_A2345 - transposase 47.83 MEAN 3.88 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.