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Vibrio cholerae O395 chromosome 2, complete sequence - 1..3024069 2742 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2132 48.03 0 2336131..2336763 + 210 147674948 - VC0395_A2191 - cAMP-regulatory protein 2133 47.98 0 2336842..2337633 - 263 147673169 - VC0395_A2192 - hypothetical protein 2134 54.46 +1 2337776..2339233 - 485 147675138 aruD VC0395_A2193 - succinylglutamic semialdehyde dehydrogenase 2135 48.73 0 2339243..2340301 - 352 147674325 - VC0395_A2194 - putative arginine/ornithine succinyltransferase 2136 51.16 0 2340402..2341613 - 403 147673566 argD VC0395_A2195 - bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein 2137 49.31 0 2342011..2342592 - 193 147673532 pabA VC0395_A2196 - para-aminobenzoate synthase component II 2138 50.46 0 2342846..2344258 + 470 147675671 - VC0395_A2197 - hypothetical protein 2139 50.23 0 2344335..2346944 - 869 147674583 - VC0395_A2198 - hypothetical protein 2140 48.19 0 2347214..2347987 - 257 147673998 - VC0395_A2199 - hypothetical protein 2141 48.82 0 2348144..2349241 - 365 147673103 trpS VC0395_A2200 - tryptophanyl-tRNA synthetase 2142 50.22 0 2349288..2349968 - 226 147673858 gph VC0395_A2201 - phosphoglycolate phosphatase 2143 51.05 0 2349988..2350698 - 236 147674230 rpe VC0395_A2202 - ribulose-phosphate 3-epimerase 2144 48.32 0 2350789..2351622 - 277 147675035 dam VC0395_A2203 - DNA adenine methylase 2145 48.44 0 2351692..2353167 - 491 147675481 - VC0395_A2204 - hypothetical protein 2146 50.77 0 2353222..2354322 - 366 147673423 aroB VC0395_A2205 - 3-dehydroquinate synthase 2147 47.24 0 2354335..2354859 - 174 147675064 aroK VC0395_A2206 - shikimate kinase I 2148 46.86 0 2355046..2356782 - 578 147673064 pilQ VC0395_A2207 - fimbrial assembly protein 2149 49.13 0 2356787..2357305 - 172 147673518 - VC0395_A2208 - putative fimbrial assembly protein PilP 2150 49.50 0 2357295..2357894 - 199 147674321 - VC0395_A2209 - putative fimbrial assembly protein PilO 2151 47.21 0 2357878..2358468 - 196 147675508 - VC0395_A2210 - putative fimbrial assembly protein PilN 2152 47.20 0 2358452..2359468 - 338 147673687 - VC0395_A2211 - putative fimbrial assembly protein PilM 2153 49.56 0 2359581..2362088 + 835 147674290 mrcA VC0395_A2212 - penicillin-binding protein 1A 2154 49.66 0 2362162..2363055 - 297 147674528 - VC0395_A2213 - DNA-binding transcriptional regulator OxyR 2155 46.91 0 2363183..2363926 + 247 147675129 - VC0395_A2214 - peroxiredoxin family protein/glutaredoxin 2156 51.20 0 2363998..2365452 + 484 147673312 - VC0395_A2215 - dihydrolipoamide dehydrogenase 2157 46.21 0 2365678..2365941 + 87 147675165 - VC0395_A2216 - hypothetical protein 2158 50.18 0 2366192..2367568 - 458 147673344 argH VC0395_A2217 - argininosuccinate lyase 2159 50.95 0 2367801..2369015 - 404 147673961 argG VC0395_A2218 - argininosuccinate synthase 2160 53.61 +1 2369091..2369879 - 262 147675582 argB VC0395_A2219 - acetylglutamate kinase 2161 50.14 0 2369889..2370929 - 346 147675531 argC VC0395_A2220 - N-acetyl-gamma-glutamyl-phosphate reductase 2162 50.31 0 2371046..2372182 + 378 147673951 argE VC0395_A2221 - acetylornithine deacetylase 2163 50.49 0 2372356..2375019 + 887 147674866 ppc VC0395_A2222 - phosphoenolpyruvate carboxylase 2164 47.41 0 2375378..2375917 + 179 147675097 - VC0395_A2223 - hypothetical protein 2165 44.19 0 2375866..2375994 + 42 147673343 - VC0395_A2224 - hypothetical protein 2166 52.92 +1 2376033..2376854 - 273 147673248 cysE VC0395_A2225 - serine acetyltransferase 2167 51.79 +1 2376927..2377961 - 344 147673990 gpsA VC0395_A2226 - NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 2168 49.68 0 2378151..2378615 - 154 147674386 secB VC0395_A2227 - preprotein translocase subunit SecB 2169 45.29 0 2378782..2379216 - 144 147675092 - VC0395_A2228 - hypothetical protein 2170 48.67 0 2379346..2380395 - 349 147673524 yjeA VC0395_A2229 - lysyl-tRNA synthetase 2171 49.97 0 2380624..2382432 + 602 147673130 frdA VC0395_A2230 - fumarate reductase flavoprotein subunit 2172 49.67 0 2382432..2383190 + 252 147673358 frdB VC0395_A2231 - fumarate reductase iron-sulfur subunit 2173 48.18 0 2383193..2383576 + 127 147674812 frdC VC0395_A2232 - fumarate reductase subunit C 2174 50.41 0 2383587..2383949 + 120 147674506 frdD VC0395_A2233 - fumarate reductase subunit D 2175 47.44 0 2384063..2384629 - 188 147673907 efp VC0395_A2234 - elongation factor P 2176 48.88 0 2384662..2385684 + 340 147674649 - VC0395_A2235 - hypothetical protein 2177 45.66 0 2385721..2386296 - 191 147673873 - VC0395_A2236 - hypothetical protein 2178 52.11 +1 2386492..2388126 - 544 147675528 groEL VC0395_A2237 - chaperonin GroEL 2179 44.67 0 2388180..2388470 - 96 147675387 groES VC0395_A2238 - co-chaperonin GroES 2180 50.97 0 2388830..2389447 + 205 147674315 - VC0395_A2239 - hypothetical protein 2181 52.22 +1 2389586..2389945 + 119 147674722 - VC0395_A2240 - hypothetical protein 2182 49.66 0 2390072..2390512 - 146 147674718 - VC0395_A2241 - hypothetical protein 2183 46.44 0 2390532..2390882 - 116 147675135 - VC0395_A2242 - putative 5-carboxymethyl-2-hydroxymuconate delta isomerase 2184 50.75 0 2391102..2391899 + 265 147673165 tpiA VC0395_A2243 - triosephosphate isomerase 2185 52.21 +1 2392017..2393399 + 460 147674936 - VC0395_A2244 - hypothetical protein 2186 50.00 0 2393486..2394001 - 171 147674928 - VC0395_A2245 - ribonuclease activity regulator protein RraA 2187 49.67 0 2394076..2394993 - 305 147675764 menA VC0395_A2246 - 1,4-dihydroxy-2-naphthoate octaprenyltransferase 2188 50.38 0 2395097..2396428 - 443 147673421 hslU VC0395_A2247 - ATP-dependent protease ATP-binding subunit 2189 51.43 0 2396494..2397051 - 185 147674179 hslV VC0395_A2248 - ATP-dependent protease peptidase subunit 2190 51.99 +1 2397188..2397739 - 183 147673934 - VC0395_A2249 - putative cell division protein FtsN 2191 52.48 +1 2397911..2398918 - 335 147674191 - VC0395_A2250 - DNA-binding transcriptional regulator CytR 2192 52.65 +1 2399224..2401428 - 734 147674045 priA VC0395_A2251 - primosome assembly protein PriA 2193 47.03 0 2401683..2401901 + 72 147674481 rpmE VC0395_A2252 - 50S ribosomal protein L31 2194 38.89 -2 2401999..2402142 + 47 147674955 - VC0395_A2253 - hypothetical protein 2195 51.25 0 2402209..2403486 + 425 147675732 - VC0395_A2254 - putative malate dehydrogenase 2196 47.80 0 2403597..2403914 - 105 147674382 metJ VC0395_A2255 - transcriptional repressor protein MetJ 2197 50.39 0 2404182..2405348 + 388 147674853 metB VC0395_A2256 - cystathionine gamma-synthase 2198 52.16 +1 2405361..2407772 + 803 147675299 metL VC0395_A2257 - bifunctional aspartate kinase II/homoserine dehydrogenase II 2199 50.38 0 2408032..2408946 + 304 147673318 metF VC0395_A2258 - 5,10-methylenetetrahydrofolate reductase 2200 46.91 0 2409009..2409251 - 80 147675567 - VC0395_A2259 - hypothetical protein 2201 52.88 +1 2409572..2410579 + 335 147674937 glpX VC0395_A2260 - fructose 1,6-bisphosphatase II 2202 49.30 0 2410656..2411651 - 331 147673340 pfkA VC0395_A2261 - 6-phosphofructokinase 2203 51.49 0 2411881..2412789 - 302 147673451 fieF VC0395_A2262 - ferrous iron efflux protein F 2204 51.39 0 2412987..2413490 - 167 147674434 cpxP VC0395_A2263 - periplasmic repressor CpxP 2205 51.53 0 2413678..2414364 + 228 147675245 cpxR VC0395_A2264 - transcriptional regulator CpxR 2206 51.11 0 2414364..2415758 + 464 147673577 cpxA VC0395_A2265 - two-component sensor protein 2207 51.27 0 2415840..2416508 + 222 147674162 sodA VC0395_A2266 - superoxide dismutase, Mn 2208 51.78 +1 2416561..2417037 + 158 147674422 - VC0395_A2267 - rRNA methylase 2209 52.26 +1 2417071..2417556 - 161 147675670 fxsA VC0395_A2268 - FxsA 2210 49.20 0 2417648..2418586 - 312 147673258 - VC0395_A2269 - GGDEF family protein 2211 48.21 0 2418831..2420282 + 483 147675095 aspA VC0395_A2270 - aspartate ammonia-lyase 2212 52.45 +1 2420410..2421717 + 435 162329619 dcuA VC0395_A2271 - anaerobic C4-dicarboxylate transporter 2213 51.24 0 2422111..2423601 + 496 147674664 - VC0395_A2272 - type II secretory pathway protein 2214 49.95 0 2423598..2425751 + 717 147674082 - VC0395_A2273 - pullulanase 2215 52.02 +1 2425869..2427671 + 600 147673525 dipZ VC0395_A2274 - thiol:disulfide interchange protein precursor 2216 50.00 0 2427844..2428473 + 209 147675562 - VC0395_A2275 - LuxR family transcriptional regulator 2217 52.00 +1 2428572..2430317 - 581 147674945 - VC0395_A2276 - potassium/proton antiporter 2218 45.69 0 2430696..2430962 + 88 147673948 - VC0395_A2277 - hypothetical protein 2219 51.94 +1 2430973..2432676 + 567 147673339 - VC0395_A2278 - putative sodium/solute symporter 2220 47.92 0 2432774..2433445 - 223 147674537 - VC0395_A2279 - hypothetical protein 2221 46.23 0 2433747..2434436 + 229 147674080 gmk VC0395_A2280 - guanylate kinase 2222 52.01 +1 2434544..2434816 + 90 147673462 rpoZ VC0395_A2281 - DNA-directed RNA polymerase subunit omega 2223 52.36 +1 2434848..2436965 + 705 147675346 spoT VC0395_A2282 - bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 2224 53.29 +1 2437084..2439162 + 692 147674684 recG VC0395_A2283 - ATP-dependent DNA helicase RecG 2225 51.32 0 2439507..2440907 + 466 147673726 - VC0395_A2284 - xanthine/uracil permease family protein 2226 50.57 0 2440932..2442248 - 438 147673138 envZ VC0395_A2285 - osmolarity sensor protein 2227 51.18 0 2442317..2443039 - 240 147673571 ompR VC0395_A2286 - osmolarity response regulator 2228 48.77 0 2443177..2443662 - 161 147675721 greB VC0395_A2287 - transcription elongation factor GreB 2229 53.92 +1 2443907..2446228 + 773 147674924 - VC0395_A2288 - hypothetical protein 2230 54.22 +1 2446320..2446817 - 165 147674208 - VC0395_A2289 - hypothetical protein 2231 54.28 +1 2446952..2447758 - 268 147674258 bioH VC0395_A2290 - bioH protein 47.83 MEAN 3.88 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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