IslandPathversion 1.0

IslandPath Analysis: Vibrio cholerae O395



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.83 STD DEV: 3.88
Vibrio cholerae O395 chromosome 2, complete sequence - 1..3024069
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2132	 48.03	0	2336131..2336763	+	210	147674948	-	VC0395_A2191	-	cAMP-regulatory protein
2133	 47.98	0	2336842..2337633	-	263	147673169	-	VC0395_A2192	-	hypothetical protein
2134	 54.46	+1	2337776..2339233	-	485	147675138	aruD	VC0395_A2193	-	succinylglutamic semialdehyde dehydrogenase
2135	 48.73	0	2339243..2340301	-	352	147674325	-	VC0395_A2194	-	putative arginine/ornithine succinyltransferase
2136	 51.16	0	2340402..2341613	-	403	147673566	argD	VC0395_A2195	-	bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein
2137	 49.31	0	2342011..2342592	-	193	147673532	pabA	VC0395_A2196	-	para-aminobenzoate synthase component II
2138	 50.46	0	2342846..2344258	+	470	147675671	-	VC0395_A2197	-	hypothetical protein
2139	 50.23	0	2344335..2346944	-	869	147674583	-	VC0395_A2198	-	hypothetical protein
2140	 48.19	0	2347214..2347987	-	257	147673998	-	VC0395_A2199	-	hypothetical protein
2141	 48.82	0	2348144..2349241	-	365	147673103	trpS	VC0395_A2200	-	tryptophanyl-tRNA synthetase
2142	 50.22	0	2349288..2349968	-	226	147673858	gph	VC0395_A2201	-	phosphoglycolate phosphatase
2143	 51.05	0	2349988..2350698	-	236	147674230	rpe	VC0395_A2202	-	ribulose-phosphate 3-epimerase
2144	 48.32	0	2350789..2351622	-	277	147675035	dam	VC0395_A2203	-	DNA adenine methylase
2145	 48.44	0	2351692..2353167	-	491	147675481	-	VC0395_A2204	-	hypothetical protein
2146	 50.77	0	2353222..2354322	-	366	147673423	aroB	VC0395_A2205	-	3-dehydroquinate synthase
2147	 47.24	0	2354335..2354859	-	174	147675064	aroK	VC0395_A2206	-	shikimate kinase I
2148	 46.86	0	2355046..2356782	-	578	147673064	pilQ	VC0395_A2207	-	fimbrial assembly protein
2149	 49.13	0	2356787..2357305	-	172	147673518	-	VC0395_A2208	-	putative fimbrial assembly protein PilP
2150	 49.50	0	2357295..2357894	-	199	147674321	-	VC0395_A2209	-	putative fimbrial assembly protein PilO
2151	 47.21	0	2357878..2358468	-	196	147675508	-	VC0395_A2210	-	putative fimbrial assembly protein PilN
2152	 47.20	0	2358452..2359468	-	338	147673687	-	VC0395_A2211	-	putative fimbrial assembly protein PilM
2153	 49.56	0	2359581..2362088	+	835	147674290	mrcA	VC0395_A2212	-	penicillin-binding protein 1A
2154	 49.66	0	2362162..2363055	-	297	147674528	-	VC0395_A2213	-	DNA-binding transcriptional regulator OxyR
2155	 46.91	0	2363183..2363926	+	247	147675129	-	VC0395_A2214	-	peroxiredoxin family protein/glutaredoxin
2156	 51.20	0	2363998..2365452	+	484	147673312	-	VC0395_A2215	-	dihydrolipoamide dehydrogenase
2157	 46.21	0	2365678..2365941	+	87	147675165	-	VC0395_A2216	-	hypothetical protein
2158	 50.18	0	2366192..2367568	-	458	147673344	argH	VC0395_A2217	-	argininosuccinate lyase
2159	 50.95	0	2367801..2369015	-	404	147673961	argG	VC0395_A2218	-	argininosuccinate synthase
2160	 53.61	+1	2369091..2369879	-	262	147675582	argB	VC0395_A2219	-	acetylglutamate kinase
2161	 50.14	0	2369889..2370929	-	346	147675531	argC	VC0395_A2220	-	N-acetyl-gamma-glutamyl-phosphate reductase
2162	 50.31	0	2371046..2372182	+	378	147673951	argE	VC0395_A2221	-	acetylornithine deacetylase
2163	 50.49	0	2372356..2375019	+	887	147674866	ppc	VC0395_A2222	-	phosphoenolpyruvate carboxylase
2164	 47.41	0	2375378..2375917	+	179	147675097	-	VC0395_A2223	-	hypothetical protein
2165	 44.19	0	2375866..2375994	+	42	147673343	-	VC0395_A2224	-	hypothetical protein
2166	 52.92	+1	2376033..2376854	-	273	147673248	cysE	VC0395_A2225	-	serine acetyltransferase
2167	 51.79	+1	2376927..2377961	-	344	147673990	gpsA	VC0395_A2226	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
2168	 49.68	0	2378151..2378615	-	154	147674386	secB	VC0395_A2227	-	preprotein translocase subunit SecB
2169	 45.29	0	2378782..2379216	-	144	147675092	-	VC0395_A2228	-	hypothetical protein
2170	 48.67	0	2379346..2380395	-	349	147673524	yjeA	VC0395_A2229	-	lysyl-tRNA synthetase
2171	 49.97	0	2380624..2382432	+	602	147673130	frdA	VC0395_A2230	-	fumarate reductase flavoprotein subunit
2172	 49.67	0	2382432..2383190	+	252	147673358	frdB	VC0395_A2231	-	fumarate reductase iron-sulfur subunit
2173	 48.18	0	2383193..2383576	+	127	147674812	frdC	VC0395_A2232	-	fumarate reductase subunit C
2174	 50.41	0	2383587..2383949	+	120	147674506	frdD	VC0395_A2233	-	fumarate reductase subunit D
2175	 47.44	0	2384063..2384629	-	188	147673907	efp	VC0395_A2234	-	elongation factor P
2176	 48.88	0	2384662..2385684	+	340	147674649	-	VC0395_A2235	-	hypothetical protein
2177	 45.66	0	2385721..2386296	-	191	147673873	-	VC0395_A2236	-	hypothetical protein
2178	 52.11	+1	2386492..2388126	-	544	147675528	groEL	VC0395_A2237	-	chaperonin GroEL
2179	 44.67	0	2388180..2388470	-	96	147675387	groES	VC0395_A2238	-	co-chaperonin GroES
2180	 50.97	0	2388830..2389447	+	205	147674315	-	VC0395_A2239	-	hypothetical protein
2181	 52.22	+1	2389586..2389945	+	119	147674722	-	VC0395_A2240	-	hypothetical protein
2182	 49.66	0	2390072..2390512	-	146	147674718	-	VC0395_A2241	-	hypothetical protein
2183	 46.44	0	2390532..2390882	-	116	147675135	-	VC0395_A2242	-	putative 5-carboxymethyl-2-hydroxymuconate delta isomerase
2184	 50.75	0	2391102..2391899	+	265	147673165	tpiA	VC0395_A2243	-	triosephosphate isomerase
2185	 52.21	+1	2392017..2393399	+	460	147674936	-	VC0395_A2244	-	hypothetical protein
2186	 50.00	0	2393486..2394001	-	171	147674928	-	VC0395_A2245	-	ribonuclease activity regulator protein RraA
2187	 49.67	0	2394076..2394993	-	305	147675764	menA	VC0395_A2246	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
2188	 50.38	0	2395097..2396428	-	443	147673421	hslU	VC0395_A2247	-	ATP-dependent protease ATP-binding subunit
2189	 51.43	0	2396494..2397051	-	185	147674179	hslV	VC0395_A2248	-	ATP-dependent protease peptidase subunit
2190	 51.99	+1	2397188..2397739	-	183	147673934	-	VC0395_A2249	-	putative cell division protein FtsN
2191	 52.48	+1	2397911..2398918	-	335	147674191	-	VC0395_A2250	-	DNA-binding transcriptional regulator CytR
2192	 52.65	+1	2399224..2401428	-	734	147674045	priA	VC0395_A2251	-	primosome assembly protein PriA
2193	 47.03	0	2401683..2401901	+	72	147674481	rpmE	VC0395_A2252	-	50S ribosomal protein L31
2194	 38.89	-2	2401999..2402142	+	47	147674955	-	VC0395_A2253	-	hypothetical protein
2195	 51.25	0	2402209..2403486	+	425	147675732	-	VC0395_A2254	-	putative malate dehydrogenase
2196	 47.80	0	2403597..2403914	-	105	147674382	metJ	VC0395_A2255	-	transcriptional repressor protein MetJ
2197	 50.39	0	2404182..2405348	+	388	147674853	metB	VC0395_A2256	-	cystathionine gamma-synthase
2198	 52.16	+1	2405361..2407772	+	803	147675299	metL	VC0395_A2257	-	bifunctional aspartate kinase II/homoserine dehydrogenase II
2199	 50.38	0	2408032..2408946	+	304	147673318	metF	VC0395_A2258	-	5,10-methylenetetrahydrofolate reductase
2200	 46.91	0	2409009..2409251	-	80	147675567	-	VC0395_A2259	-	hypothetical protein
2201	 52.88	+1	2409572..2410579	+	335	147674937	glpX	VC0395_A2260	-	fructose 1,6-bisphosphatase II
2202	 49.30	0	2410656..2411651	-	331	147673340	pfkA	VC0395_A2261	-	6-phosphofructokinase
2203	 51.49	0	2411881..2412789	-	302	147673451	fieF	VC0395_A2262	-	ferrous iron efflux protein F
2204	 51.39	0	2412987..2413490	-	167	147674434	cpxP	VC0395_A2263	-	periplasmic repressor CpxP
2205	 51.53	0	2413678..2414364	+	228	147675245	cpxR	VC0395_A2264	-	transcriptional regulator CpxR
2206	 51.11	0	2414364..2415758	+	464	147673577	cpxA	VC0395_A2265	-	two-component sensor protein
2207	 51.27	0	2415840..2416508	+	222	147674162	sodA	VC0395_A2266	-	superoxide dismutase, Mn
2208	 51.78	+1	2416561..2417037	+	158	147674422	-	VC0395_A2267	-	rRNA methylase
2209	 52.26	+1	2417071..2417556	-	161	147675670	fxsA	VC0395_A2268	-	FxsA
2210	 49.20	0	2417648..2418586	-	312	147673258	-	VC0395_A2269	-	GGDEF family protein
2211	 48.21	0	2418831..2420282	+	483	147675095	aspA	VC0395_A2270	-	aspartate ammonia-lyase
2212	 52.45	+1	2420410..2421717	+	435	162329619	dcuA	VC0395_A2271	-	anaerobic C4-dicarboxylate transporter
2213	 51.24	0	2422111..2423601	+	496	147674664	-	VC0395_A2272	-	type II secretory pathway protein
2214	 49.95	0	2423598..2425751	+	717	147674082	-	VC0395_A2273	-	pullulanase
2215	 52.02	+1	2425869..2427671	+	600	147673525	dipZ	VC0395_A2274	-	thiol:disulfide interchange protein precursor
2216	 50.00	0	2427844..2428473	+	209	147675562	-	VC0395_A2275	-	LuxR family transcriptional regulator
2217	 52.00	+1	2428572..2430317	-	581	147674945	-	VC0395_A2276	-	potassium/proton antiporter
2218	 45.69	0	2430696..2430962	+	88	147673948	-	VC0395_A2277	-	hypothetical protein
2219	 51.94	+1	2430973..2432676	+	567	147673339	-	VC0395_A2278	-	putative sodium/solute symporter
2220	 47.92	0	2432774..2433445	-	223	147674537	-	VC0395_A2279	-	hypothetical protein
2221	 46.23	0	2433747..2434436	+	229	147674080	gmk	VC0395_A2280	-	guanylate kinase
2222	 52.01	+1	2434544..2434816	+	90	147673462	rpoZ	VC0395_A2281	-	DNA-directed RNA polymerase subunit omega
2223	 52.36	+1	2434848..2436965	+	705	147675346	spoT	VC0395_A2282	-	bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase
2224	 53.29	+1	2437084..2439162	+	692	147674684	recG	VC0395_A2283	-	ATP-dependent DNA helicase RecG
2225	 51.32	0	2439507..2440907	+	466	147673726	-	VC0395_A2284	-	xanthine/uracil permease family protein
2226	 50.57	0	2440932..2442248	-	438	147673138	envZ	VC0395_A2285	-	osmolarity sensor protein
2227	 51.18	0	2442317..2443039	-	240	147673571	ompR	VC0395_A2286	-	osmolarity response regulator
2228	 48.77	0	2443177..2443662	-	161	147675721	greB	VC0395_A2287	-	transcription elongation factor GreB
2229	 53.92	+1	2443907..2446228	+	773	147674924	-	VC0395_A2288	-	hypothetical protein
2230	 54.22	+1	2446320..2446817	-	165	147674208	-	VC0395_A2289	-	hypothetical protein
2231	 54.28	+1	2446952..2447758	-	268	147674258	bioH	VC0395_A2290	-	bioH protein
47.83	MEAN

3.88	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.