version 1.0
Vibrio cholerae O395 chromosome 2, complete sequence - 1..3024069 2742 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2098 46.43 0 2310115..2310618 - 167 147675266 rpsE VC0395_A2157 - 30S ribosomal protein S5 2099 50.00 0 2310633..2310986 - 117 147675740 rplR VC0395_A2158 - 50S ribosomal protein L18 2100 47.19 0 2310996..2311529 - 177 147673740 rplF VC0395_A2159 - 50S ribosomal protein L6 2101 46.06 0 2311544..2311936 - 130 147674032 rpsH VC0395_A2160 - 30S ribosomal protein S8 2102 46.73 0 2311966..2312271 - 101 147673229 rpsN VC0395_A2161 - 30S ribosomal protein S14 2103 47.78 0 2312289..2312828 - 179 147673227 rplE VC0395_A2162 - 50S ribosomal protein L5 2104 41.19 -1 2312853..2313170 - 105 147675182 rplX VC0395_A2163 - 50S ribosomal protein L24 2105 47.31 0 2313183..2313554 - 123 147674361 rplN VC0395_A2164 - 50S ribosomal protein L14 2106 43.92 -1 2313717..2313971 - 84 147673772 rpsQ VC0395_A2165 - 30S ribosomal protein S17 2107 46.35 0 2313971..2314162 - 63 147674803 rpmC VC0395_A2166 - 50S ribosomal protein L29 2108 47.69 0 2314162..2314572 - 136 147674181 rplP VC0395_A2167 - 50S ribosomal protein L16 2109 50.00 0 2314584..2315285 - 233 147673134 rpsC VC0395_A2168 - 30S ribosomal protein S3 2110 47.45 0 2315305..2315637 - 110 147675261 rplV VC0395_A2169 - 50S ribosomal protein L22 2111 45.16 0 2315648..2315926 - 92 147673573 rpsS VC0395_A2170 - 30S ribosomal protein S19 2112 51.52 0 2315947..2316771 - 274 147675192 rplB VC0395_A2171 - 50S ribosomal protein L2 2113 43.56 -1 2316788..2317090 - 100 147673850 rplW VC0395_A2172 - 50S ribosomal protein L23 2114 46.60 0 2317087..2317689 - 200 147673082 rplD VC0395_A2173 - 50S ribosomal protein L4 2115 47.14 0 2317706..2318335 - 209 147673700 rplC VC0395_A2174 - 50S ribosomal protein L3 2116 46.79 0 2318350..2318661 - 103 147675533 rpsJ VC0395_A2175 - 30S ribosomal protein S10 2117 52.55 +1 2319132..2319875 - 247 147673348 - VC0395_A2176 - 23S rRNA (guanosine-2'-O-)-methyltransferase 2118 50.65 0 2319883..2322348 - 821 147675348 vacB VC0395_A2177 - ribonuclease R 2119 47.83 0 2322492..2324360 + 622 147674403 - VC0395_A2178 - hypothetical protein 2120 50.47 0 2324387..2325022 - 211 147674337 motX VC0395_A2179 - sodium-type flagellar protein MotX 2121 49.11 0 2325230..2326528 - 432 147673842 purA VC0395_A2180 - adenylosuccinate synthetase 2122 52.50 +1 2326656..2327636 - 326 147674447 - VC0395_A2181 - putative asparaginase 2123 52.33 +1 2327799..2328398 - 199 147674781 slyD VC0395_A2182 - peptidyl-prolyl cis-trans isomerase, FKBP-type 2124 49.25 0 2328490..2328690 - 66 147675564 - VC0395_A2183 - hypothetical protein 2125 51.64 0 2328700..2330502 - 600 147673616 kefB VC0395_A2184 - glutathione-regulated potassium-efflux system protein KefB 2126 50.93 0 2330483..2331073 - 196 147674366 - VC0395_A2185 - glutathione-regulated potassium-efflux system ancillary protein KefG 2127 51.96 +1 2331196..2333112 + 638 147674436 - VC0395_A2186 - ABC transporter, ATP-binding protein 2128 47.12 0 2333113..2333598 + 161 147675154 - VC0395_A2187 - hypothetical protein 2129 52.32 +1 2333595..2334584 + 329 147673191 - VC0395_A2188 - putative hydrolase 2130 43.33 -1 2334713..2334922 + 69 147674020 - VC0395_A2189 - hypothetical protein 2131 51.03 0 2335019..2335888 + 289 147675716 prkB VC0395_A2190 - phosphoribulokinase 2132 48.03 0 2336131..2336763 + 210 147674948 - VC0395_A2191 - cAMP-regulatory protein 2133 47.98 0 2336842..2337633 - 263 147673169 - VC0395_A2192 - hypothetical protein 2134 54.46 +1 2337776..2339233 - 485 147675138 aruD VC0395_A2193 - succinylglutamic semialdehyde dehydrogenase 2135 48.73 0 2339243..2340301 - 352 147674325 - VC0395_A2194 - putative arginine/ornithine succinyltransferase 2136 51.16 0 2340402..2341613 - 403 147673566 argD VC0395_A2195 - bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein 2137 49.31 0 2342011..2342592 - 193 147673532 pabA VC0395_A2196 - para-aminobenzoate synthase component II 2138 50.46 0 2342846..2344258 + 470 147675671 - VC0395_A2197 - hypothetical protein 2139 50.23 0 2344335..2346944 - 869 147674583 - VC0395_A2198 - hypothetical protein 2140 48.19 0 2347214..2347987 - 257 147673998 - VC0395_A2199 - hypothetical protein 2141 48.82 0 2348144..2349241 - 365 147673103 trpS VC0395_A2200 - tryptophanyl-tRNA synthetase 2142 50.22 0 2349288..2349968 - 226 147673858 gph VC0395_A2201 - phosphoglycolate phosphatase 2143 51.05 0 2349988..2350698 - 236 147674230 rpe VC0395_A2202 - ribulose-phosphate 3-epimerase 2144 48.32 0 2350789..2351622 - 277 147675035 dam VC0395_A2203 - DNA adenine methylase 2145 48.44 0 2351692..2353167 - 491 147675481 - VC0395_A2204 - hypothetical protein 2146 50.77 0 2353222..2354322 - 366 147673423 aroB VC0395_A2205 - 3-dehydroquinate synthase 2147 47.24 0 2354335..2354859 - 174 147675064 aroK VC0395_A2206 - shikimate kinase I 2148 46.86 0 2355046..2356782 - 578 147673064 pilQ VC0395_A2207 - fimbrial assembly protein 2149 49.13 0 2356787..2357305 - 172 147673518 - VC0395_A2208 - putative fimbrial assembly protein PilP 2150 49.50 0 2357295..2357894 - 199 147674321 - VC0395_A2209 - putative fimbrial assembly protein PilO 2151 47.21 0 2357878..2358468 - 196 147675508 - VC0395_A2210 - putative fimbrial assembly protein PilN 2152 47.20 0 2358452..2359468 - 338 147673687 - VC0395_A2211 - putative fimbrial assembly protein PilM 2153 49.56 0 2359581..2362088 + 835 147674290 mrcA VC0395_A2212 - penicillin-binding protein 1A 2154 49.66 0 2362162..2363055 - 297 147674528 - VC0395_A2213 - DNA-binding transcriptional regulator OxyR 2155 46.91 0 2363183..2363926 + 247 147675129 - VC0395_A2214 - peroxiredoxin family protein/glutaredoxin 2156 51.20 0 2363998..2365452 + 484 147673312 - VC0395_A2215 - dihydrolipoamide dehydrogenase 2157 46.21 0 2365678..2365941 + 87 147675165 - VC0395_A2216 - hypothetical protein 2158 50.18 0 2366192..2367568 - 458 147673344 argH VC0395_A2217 - argininosuccinate lyase 2159 50.95 0 2367801..2369015 - 404 147673961 argG VC0395_A2218 - argininosuccinate synthase 2160 53.61 +1 2369091..2369879 - 262 147675582 argB VC0395_A2219 - acetylglutamate kinase 2161 50.14 0 2369889..2370929 - 346 147675531 argC VC0395_A2220 - N-acetyl-gamma-glutamyl-phosphate reductase 2162 50.31 0 2371046..2372182 + 378 147673951 argE VC0395_A2221 - acetylornithine deacetylase 2163 50.49 0 2372356..2375019 + 887 147674866 ppc VC0395_A2222 - phosphoenolpyruvate carboxylase 2164 47.41 0 2375378..2375917 + 179 147675097 - VC0395_A2223 - hypothetical protein 2165 44.19 0 2375866..2375994 + 42 147673343 - VC0395_A2224 - hypothetical protein 2166 52.92 +1 2376033..2376854 - 273 147673248 cysE VC0395_A2225 - serine acetyltransferase 2167 51.79 +1 2376927..2377961 - 344 147673990 gpsA VC0395_A2226 - NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 2168 49.68 0 2378151..2378615 - 154 147674386 secB VC0395_A2227 - preprotein translocase subunit SecB 2169 45.29 0 2378782..2379216 - 144 147675092 - VC0395_A2228 - hypothetical protein 2170 48.67 0 2379346..2380395 - 349 147673524 yjeA VC0395_A2229 - lysyl-tRNA synthetase 2171 49.97 0 2380624..2382432 + 602 147673130 frdA VC0395_A2230 - fumarate reductase flavoprotein subunit 2172 49.67 0 2382432..2383190 + 252 147673358 frdB VC0395_A2231 - fumarate reductase iron-sulfur subunit 2173 48.18 0 2383193..2383576 + 127 147674812 frdC VC0395_A2232 - fumarate reductase subunit C 2174 50.41 0 2383587..2383949 + 120 147674506 frdD VC0395_A2233 - fumarate reductase subunit D 2175 47.44 0 2384063..2384629 - 188 147673907 efp VC0395_A2234 - elongation factor P 2176 48.88 0 2384662..2385684 + 340 147674649 - VC0395_A2235 - hypothetical protein 2177 45.66 0 2385721..2386296 - 191 147673873 - VC0395_A2236 - hypothetical protein 2178 52.11 +1 2386492..2388126 - 544 147675528 groEL VC0395_A2237 - chaperonin GroEL 2179 44.67 0 2388180..2388470 - 96 147675387 groES VC0395_A2238 - co-chaperonin GroES 2180 50.97 0 2388830..2389447 + 205 147674315 - VC0395_A2239 - hypothetical protein 2181 52.22 +1 2389586..2389945 + 119 147674722 - VC0395_A2240 - hypothetical protein 2182 49.66 0 2390072..2390512 - 146 147674718 - VC0395_A2241 - hypothetical protein 2183 46.44 0 2390532..2390882 - 116 147675135 - VC0395_A2242 - putative 5-carboxymethyl-2-hydroxymuconate delta isomerase 2184 50.75 0 2391102..2391899 + 265 147673165 tpiA VC0395_A2243 - triosephosphate isomerase 2185 52.21 +1 2392017..2393399 + 460 147674936 - VC0395_A2244 - hypothetical protein 2186 50.00 0 2393486..2394001 - 171 147674928 - VC0395_A2245 - ribonuclease activity regulator protein RraA 2187 49.67 0 2394076..2394993 - 305 147675764 menA VC0395_A2246 - 1,4-dihydroxy-2-naphthoate octaprenyltransferase 2188 50.38 0 2395097..2396428 - 443 147673421 hslU VC0395_A2247 - ATP-dependent protease ATP-binding subunit 2189 51.43 0 2396494..2397051 - 185 147674179 hslV VC0395_A2248 - ATP-dependent protease peptidase subunit 2190 51.99 +1 2397188..2397739 - 183 147673934 - VC0395_A2249 - putative cell division protein FtsN 2191 52.48 +1 2397911..2398918 - 335 147674191 - VC0395_A2250 - DNA-binding transcriptional regulator CytR 2192 52.65 +1 2399224..2401428 - 734 147674045 priA VC0395_A2251 - primosome assembly protein PriA 2193 47.03 0 2401683..2401901 + 72 147674481 rpmE VC0395_A2252 - 50S ribosomal protein L31 2194 38.89 -2 2401999..2402142 + 47 147674955 - VC0395_A2253 - hypothetical protein 2195 51.25 0 2402209..2403486 + 425 147675732 - VC0395_A2254 - putative malate dehydrogenase 2196 47.80 0 2403597..2403914 - 105 147674382 metJ VC0395_A2255 - transcriptional repressor protein MetJ 2197 50.39 0 2404182..2405348 + 388 147674853 metB VC0395_A2256 - cystathionine gamma-synthase 47.83 MEAN 3.88 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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