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Vibrio cholerae O395 chromosome 2, complete sequence - 1..3024069 2742 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2025 49.78 0 2241323..2241772 + 149 147674807 holC VC0395_A2084 - DNA polymerase III subunit chi 2026 50.49 0 2241866..2244727 + 953 147674393 valS VC0395_A2085 - valyl-tRNA synthetase 2027 51.02 0 2244805..2245782 - 325 147673560 - VC0395_A2086 - 2-hydroxyacid dehydrogenase family protein 2028 48.92 0 2245822..2246559 - 245 147673149 rluA-1 VC0395_A2087 - ribosomal large subunit pseudouridine synthase A 2029 52.13 +1 2246656..2249565 - 969 147673548 hepA VC0395_A2088 - ATP-dependent helicase HepA 2030 46.49 0 2249800..2249913 - 37 147674124 - VC0395_A2089 - hypothetical protein 2031 51.13 0 2249987..2251363 + 458 147674923 - VC0395_A2090 - hypothetical protein 2032 50.25 0 2251513..2252517 + 334 147675468 argF VC0395_A2091 - ornithine carbamoyltransferase 2033 49.14 0 2252704..2253696 + 330 147675497 pyrB VC0395_A2092 - aspartate carbamoyltransferase catalytic subunit 2034 47.65 0 2253708..2254175 + 155 147673435 pyrI VC0395_A2093 - aspartate carbamoyltransferase regulatory subunit 2035 50.51 0 2254280..2254669 + 129 147673847 - VC0395_A2094 - hypothetical protein 2036 49.36 0 2254750..2255535 - 261 147674609 plsC VC0395_A2095 - 1-acyl-sn-glycerol-3-phosphate acyltransferase 2037 51.59 0 2255557..2256816 - 419 147674274 murA VC0395_A2096 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2038 43.92 -1 2256824..2257078 - 84 147673378 - VC0395_A2097 - BolA family protein 2039 43.03 -1 2257071..2257400 - 109 147675756 - VC0395_A2098 - putative anti-sigma B factor antagonist 2040 48.13 0 2257397..2258038 - 213 147674971 - VC0395_A2099 - hypothetical protein 2041 46.54 0 2258039..2258530 - 163 147673144 - VC0395_A2100 - hypothetical protein 2042 53.80 +1 2258533..2259309 - 258 147675288 - VC0395_A2101 - hypothetical protein 2043 50.37 0 2259314..2260117 - 267 147674625 - VC0395_A2102 - ABC transporter, ATP-binding protein 2044 49.95 0 2260674..2261672 + 332 147673866 - VC0395_A2103 - hypothetical protein 2045 49.75 0 2261722..2262702 + 326 147674957 - VC0395_A2104 - hypothetical protein 2046 48.03 0 2262702..2263259 + 185 147674151 - VC0395_A2105 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 2047 45.16 0 2263262..2263819 + 185 147673200 - VC0395_A2106 - hypothetical protein 2048 45.00 0 2263755..2264294 + 179 147675161 - VC0395_A2107 - hypothetical protein 2049 51.24 0 2264297..2265022 + 241 147674741 - VC0395_A2108 - ABC transporter, ATP-binding protein 2050 49.66 0 2265078..2266541 + 487 147673900 rpoN VC0395_A2109 - RNA polymerase factor sigma-54 2051 40.97 -1 2266566..2266853 + 95 147674193 - VC0395_A2110 - putative sigma-54 modulation protein 2052 47.87 0 2266856..2267302 + 148 147674862 ptsN VC0395_A2111 - PTS system, nitrogen regulatory IIA component 2053 50.75 0 2267315..2268175 + 286 147674314 - VC0395_A2112 - hypothetical protein 2054 51.97 +1 2268184..2268462 + 92 147674555 ptsO VC0395_A2113 - phosphocarrier protein NPr 2055 53.16 +1 2268623..2269984 + 453 147675153 mgtE-2 VC0395_A2114 - magnesium transporter 2056 50.30 0 2270057..2271400 - 447 147673242 pmbA VC0395_A2115 - peptidase PmbA 2057 49.14 0 2271499..2272080 + 193 147673507 - VC0395_A2116 - hypothetical protein 2058 52.16 +1 2272184..2272900 - 238 147674110 - VC0395_A2117 - putative thiamine ABC transporter, ATP-binding protein 2059 52.54 +1 2272912..2274504 - 530 147675055 thiP VC0395_A2118 - thiamine transporter membrane protein 2060 50.45 0 2274514..2275506 - 330 147675627 tbpA VC0395_A2119 - thiamine transporter substrate binding subunit 2061 54.87 +1 2275768..2276403 - 211 147673199 ubiX VC0395_A2120 - aromatic acid decarboxylase 2062 50.74 0 2276410..2277765 - 451 147675374 mpl VC0395_A2121 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 2063 48.96 0 2278071..2279081 + 336 147674062 fbp VC0395_A2122 - fructose-1,6-bisphosphatase 2064 49.91 0 2279254..2279784 + 176 147673469 ppa VC0395_A2123 - inorganic pyrophosphatase 2065 47.70 0 2279844..2280191 - 115 147675679 - VC0395_A2124 - hypothetical protein 2066 50.70 0 2280202..2283966 - 1254 147675087 - VC0395_A2125 - hypothetical protein 2067 49.51 0 2283963..2285711 - 582 147673985 - VC0395_A2126 - hypothetical protein 2068 53.21 +1 2285857..2286495 + 212 147673057 msrA VC0395_A2127 - methionine sulfoxide reductase A 2069 49.09 0 2286577..2287128 + 183 147675328 - VC0395_A2128 - hypothetical protein 2070 50.65 0 2287346..2287651 + 101 147674516 - VC0395_A2129 - hypothetical protein 2071 48.01 0 2287701..2288429 + 242 147674085 - VC0395_A2130 - hypothetical protein 2072 50.63 0 2288511..2289227 + 238 147674984 - VC0395_A2131 - ABC transporter, ATP-binding protein 2073 51.11 0 2289218..2290483 + 421 147673184 - VC0395_A2132 - hypothetical protein 2074 47.51 0 2290536..2291057 + 173 147673765 - VC0395_A2133 - hypothetical protein 2075 50.17 0 2291680..2292267 + 195 147674700 - VC0395_A2134 - hypothetical protein 2076 53.40 +1 2292340..2292987 - 215 147675279 cysC VC0395_A2135 - adenylylsulfate kinase 2077 48.99 0 2292998..2294428 - 476 147673489 cysN VC0395_A2136 - sulfate adenylyltransferase subunit 1 2078 49.17 0 2294446..2295354 - 302 147674260 cysD VC0395_A2137 - sulfate adenylyltransferase subunit 2 2079 55.33 +1 2295457..2296356 - 299 147675164 cysG VC0395_A2138 - uroporphyrin-III C-methyltransferase 2080 48.88 0 2296557..2298602 + 681 147675775 cpdB VC0395_A2139 - bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein 2081 50.35 0 2298721..2299290 + 189 147674395 - VC0395_A2140 - hypothetical protein 2082 50.90 0 2299293..2300675 - 460 147673597 dbpA VC0395_A2141 - ATP-dependent RNA helicase DbpA 2083 48.67 0 2300901..2301350 + 149 147674368 - VC0395_A2142 - acetyltransferase 2084 51.12 0 2301353..2302246 + 297 147673569 - VC0395_A2143 - drug/metabolite exporter family protein 2085 45.30 0 2302681..2302797 + 38 147674545 - VC0395_A2144 - hypothetical protein 2086 50.89 0 2302988..2303608 + 206 147673755 fklB VC0395_A2145 - peptidyl-prolyl cis-trans isomerase, FKBP-type 2087 38.81 -2 2303785..2304222 + 145 147673367 tnpA VC0395_A2146 - IS1004 transposase 2088 45.34 0 2304366..2304848 + 160 147675514 - VC0395_A2147 - hypothetical protein 2089 49.10 0 2304992..2305378 - 128 147674916 rplQ VC0395_A2148 - 50S ribosomal protein L17 2090 47.03 0 2305405..2306397 - 330 147674278 rpoA VC0395_A2149 - DNA-directed RNA polymerase subunit alpha 2091 46.54 0 2306422..2307042 - 206 147675276 rpsD VC0395_A2150 - 30S ribosomal protein S4 2092 50.26 0 2307070..2307459 - 129 147673111 rpsK VC0395_A2151 - 30S ribosomal protein S11 2093 47.34 0 2307479..2307835 - 118 147674839 rpsM VC0395_A2152 - 30S ribosomal protein S13 2094 45.61 0 2307985..2308098 - 37 147675535 rpmJ VC0395_A2153 - 50S ribosomal protein L36 2095 45.62 0 2308137..2309471 - 444 147673663 secY VC0395_A2154 - preprotein translocase subunit SecY 2096 47.13 0 2309492..2309926 - 144 147674243 rplO VC0395_A2155 - 50S ribosomal protein L15 2097 41.24 -1 2309932..2310108 - 58 147674502 rpmD VC0395_A2156 - 50S ribosomal protein L30 2098 46.43 0 2310115..2310618 - 167 147675266 rpsE VC0395_A2157 - 30S ribosomal protein S5 2099 50.00 0 2310633..2310986 - 117 147675740 rplR VC0395_A2158 - 50S ribosomal protein L18 2100 47.19 0 2310996..2311529 - 177 147673740 rplF VC0395_A2159 - 50S ribosomal protein L6 2101 46.06 0 2311544..2311936 - 130 147674032 rpsH VC0395_A2160 - 30S ribosomal protein S8 2102 46.73 0 2311966..2312271 - 101 147673229 rpsN VC0395_A2161 - 30S ribosomal protein S14 2103 47.78 0 2312289..2312828 - 179 147673227 rplE VC0395_A2162 - 50S ribosomal protein L5 2104 41.19 -1 2312853..2313170 - 105 147675182 rplX VC0395_A2163 - 50S ribosomal protein L24 2105 47.31 0 2313183..2313554 - 123 147674361 rplN VC0395_A2164 - 50S ribosomal protein L14 2106 43.92 -1 2313717..2313971 - 84 147673772 rpsQ VC0395_A2165 - 30S ribosomal protein S17 2107 46.35 0 2313971..2314162 - 63 147674803 rpmC VC0395_A2166 - 50S ribosomal protein L29 2108 47.69 0 2314162..2314572 - 136 147674181 rplP VC0395_A2167 - 50S ribosomal protein L16 2109 50.00 0 2314584..2315285 - 233 147673134 rpsC VC0395_A2168 - 30S ribosomal protein S3 2110 47.45 0 2315305..2315637 - 110 147675261 rplV VC0395_A2169 - 50S ribosomal protein L22 2111 45.16 0 2315648..2315926 - 92 147673573 rpsS VC0395_A2170 - 30S ribosomal protein S19 2112 51.52 0 2315947..2316771 - 274 147675192 rplB VC0395_A2171 - 50S ribosomal protein L2 2113 43.56 -1 2316788..2317090 - 100 147673850 rplW VC0395_A2172 - 50S ribosomal protein L23 2114 46.60 0 2317087..2317689 - 200 147673082 rplD VC0395_A2173 - 50S ribosomal protein L4 2115 47.14 0 2317706..2318335 - 209 147673700 rplC VC0395_A2174 - 50S ribosomal protein L3 2116 46.79 0 2318350..2318661 - 103 147675533 rpsJ VC0395_A2175 - 30S ribosomal protein S10 2117 52.55 +1 2319132..2319875 - 247 147673348 - VC0395_A2176 - 23S rRNA (guanosine-2'-O-)-methyltransferase 2118 50.65 0 2319883..2322348 - 821 147675348 vacB VC0395_A2177 - ribonuclease R 2119 47.83 0 2322492..2324360 + 622 147674403 - VC0395_A2178 - hypothetical protein 2120 50.47 0 2324387..2325022 - 211 147674337 motX VC0395_A2179 - sodium-type flagellar protein MotX 2121 49.11 0 2325230..2326528 - 432 147673842 purA VC0395_A2180 - adenylosuccinate synthetase 2122 52.50 +1 2326656..2327636 - 326 147674447 - VC0395_A2181 - putative asparaginase 2123 52.33 +1 2327799..2328398 - 199 147674781 slyD VC0395_A2182 - peptidyl-prolyl cis-trans isomerase, FKBP-type 2124 49.25 0 2328490..2328690 - 66 147675564 - VC0395_A2183 - hypothetical protein 47.83 MEAN 3.88 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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