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Vibrio cholerae O395 chromosome 2, complete sequence - 1..3024069 2742 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1996 50.11 0 2205057..2205503 - 148 147673734 - VC0395_A2047 - hypothetical protein 1997 48.28 0 2205451..2205711 - 86 147673136 - VC0395_A2048 - hypothetical protein 1998 51.23 0 2205864..2206835 + 323 147675445 - VC0395_A2049 - hypothetical protein 1999 44.02 0 2207442..2207675 + 77 147674699 - VC0395_A2050 - hypothetical protein 2000 53.09 +1 2207776..2209005 - 409 147673773 visC VC0395_A2051 - 2-octaprenyl-6-methoxyphenol hydroxylase 2001 53.10 +1 2209017..2210225 - 402 147673178 ubiH VC0395_A2052 - 2-octaprenyl-6-methoxyphenyl hydroxylase 2002 48.26 0 2210246..2210821 - 191 147673888 - VC0395_A2053 - hypothetical protein 2003 45.31 0 2211063..2211371 + 102 147673126 - VC0395_A2054 - hypothetical protein 2004 50.60 0 2211571..2212155 + 194 147675713 - VC0395_A2055 - hypothetical protein 2005 49.47 0 2212265..2212921 + 218 147675007 rpiA VC0395_A2056 - ribose-5-phosphate isomerase A 2006 49.19 0 2213175..2214404 + 409 147673205 serA VC0395_A2057 - D-3-phosphoglycerate dehydrogenase 2007 49.90 0 2214636..2215130 - 164 147674009 ilvH VC0395_A2058 - acetolactate synthase 3 regulatory subunit 2008 47.85 0 2215132..2216853 - 573 147674433 ilvI VC0395_A2059 - acetolactate synthase 3 catalytic subunit 2009 46.35 0 2217338..2219143 - 601 147675212 - VC0395_A2060 - putative long-chain-fatty-acid--CoA ligase 2010 47.72 0 2219320..2220285 - 321 147675366 leuO VC0395_A2061 - leucine transcriptional activator 2011 43.16 -1 2220585..2221673 - 362 147673059 - VC0395_A2062 - hypothetical protein 2012 47.67 0 2221670..2222206 - 178 147674707 - VC0395_A2063 - hypothetical protein 2013 42.61 -1 2222333..2222968 - 211 147675438 - VC0395_A2064 - TetR family transcriptional regulator 2014 48.03 0 2223351..2224901 + 516 147673148 leuA VC0395_A2065 - 2-isopropylmalate synthase 2015 51.19 0 2225013..2226104 + 363 147674369 leuB VC0395_A2066 - 3-isopropylmalate dehydrogenase 2016 51.07 0 2226162..2227565 + 467 147674703 leuC VC0395_A2067 - isopropylmalate isomerase large subunit 2017 47.10 0 2227581..2228183 + 200 147675448 leuD VC0395_A2068 - isopropylmalate isomerase small subunit 2018 42.55 -1 2228284..2229075 + 263 147675458 - VC0395_A2069 - hypothetical protein 2019 35.00 -2 2234628..2234747 - 39 147674909 - VC0395_A2077 - hypothetical protein 2020 44.10 0 2235096..2236349 - 417 147675731 - VC0395_A2078 - hypothetical protein 2021 47.83 0 2236774..2237256 + 160 147675223 - VC0395_A2080 - hypothetical protein 2022 47.25 0 2237360..2238430 - 356 147674275 - VC0395_A2081 - hypothetical protein 2023 46.68 0 2238434..2239534 - 366 147673657 - VC0395_A2082 - hypothetical protein 2024 50.26 0 2239728..2241239 + 503 147675524 pepA VC0395_A2083 - leucyl aminopeptidase 2025 49.78 0 2241323..2241772 + 149 147674807 holC VC0395_A2084 - DNA polymerase III subunit chi 2026 50.49 0 2241866..2244727 + 953 147674393 valS VC0395_A2085 - valyl-tRNA synthetase 2027 51.02 0 2244805..2245782 - 325 147673560 - VC0395_A2086 - 2-hydroxyacid dehydrogenase family protein 2028 48.92 0 2245822..2246559 - 245 147673149 rluA-1 VC0395_A2087 - ribosomal large subunit pseudouridine synthase A 2029 52.13 +1 2246656..2249565 - 969 147673548 hepA VC0395_A2088 - ATP-dependent helicase HepA 2030 46.49 0 2249800..2249913 - 37 147674124 - VC0395_A2089 - hypothetical protein 2031 51.13 0 2249987..2251363 + 458 147674923 - VC0395_A2090 - hypothetical protein 2032 50.25 0 2251513..2252517 + 334 147675468 argF VC0395_A2091 - ornithine carbamoyltransferase 2033 49.14 0 2252704..2253696 + 330 147675497 pyrB VC0395_A2092 - aspartate carbamoyltransferase catalytic subunit 2034 47.65 0 2253708..2254175 + 155 147673435 pyrI VC0395_A2093 - aspartate carbamoyltransferase regulatory subunit 2035 50.51 0 2254280..2254669 + 129 147673847 - VC0395_A2094 - hypothetical protein 2036 49.36 0 2254750..2255535 - 261 147674609 plsC VC0395_A2095 - 1-acyl-sn-glycerol-3-phosphate acyltransferase 2037 51.59 0 2255557..2256816 - 419 147674274 murA VC0395_A2096 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2038 43.92 -1 2256824..2257078 - 84 147673378 - VC0395_A2097 - BolA family protein 2039 43.03 -1 2257071..2257400 - 109 147675756 - VC0395_A2098 - putative anti-sigma B factor antagonist 2040 48.13 0 2257397..2258038 - 213 147674971 - VC0395_A2099 - hypothetical protein 2041 46.54 0 2258039..2258530 - 163 147673144 - VC0395_A2100 - hypothetical protein 2042 53.80 +1 2258533..2259309 - 258 147675288 - VC0395_A2101 - hypothetical protein 2043 50.37 0 2259314..2260117 - 267 147674625 - VC0395_A2102 - ABC transporter, ATP-binding protein 2044 49.95 0 2260674..2261672 + 332 147673866 - VC0395_A2103 - hypothetical protein 2045 49.75 0 2261722..2262702 + 326 147674957 - VC0395_A2104 - hypothetical protein 2046 48.03 0 2262702..2263259 + 185 147674151 - VC0395_A2105 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 2047 45.16 0 2263262..2263819 + 185 147673200 - VC0395_A2106 - hypothetical protein 2048 45.00 0 2263755..2264294 + 179 147675161 - VC0395_A2107 - hypothetical protein 2049 51.24 0 2264297..2265022 + 241 147674741 - VC0395_A2108 - ABC transporter, ATP-binding protein 2050 49.66 0 2265078..2266541 + 487 147673900 rpoN VC0395_A2109 - RNA polymerase factor sigma-54 2051 40.97 -1 2266566..2266853 + 95 147674193 - VC0395_A2110 - putative sigma-54 modulation protein 2052 47.87 0 2266856..2267302 + 148 147674862 ptsN VC0395_A2111 - PTS system, nitrogen regulatory IIA component 2053 50.75 0 2267315..2268175 + 286 147674314 - VC0395_A2112 - hypothetical protein 2054 51.97 +1 2268184..2268462 + 92 147674555 ptsO VC0395_A2113 - phosphocarrier protein NPr 2055 53.16 +1 2268623..2269984 + 453 147675153 mgtE-2 VC0395_A2114 - magnesium transporter 2056 50.30 0 2270057..2271400 - 447 147673242 pmbA VC0395_A2115 - peptidase PmbA 2057 49.14 0 2271499..2272080 + 193 147673507 - VC0395_A2116 - hypothetical protein 2058 52.16 +1 2272184..2272900 - 238 147674110 - VC0395_A2117 - putative thiamine ABC transporter, ATP-binding protein 2059 52.54 +1 2272912..2274504 - 530 147675055 thiP VC0395_A2118 - thiamine transporter membrane protein 2060 50.45 0 2274514..2275506 - 330 147675627 tbpA VC0395_A2119 - thiamine transporter substrate binding subunit 2061 54.87 +1 2275768..2276403 - 211 147673199 ubiX VC0395_A2120 - aromatic acid decarboxylase 2062 50.74 0 2276410..2277765 - 451 147675374 mpl VC0395_A2121 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 2063 48.96 0 2278071..2279081 + 336 147674062 fbp VC0395_A2122 - fructose-1,6-bisphosphatase 2064 49.91 0 2279254..2279784 + 176 147673469 ppa VC0395_A2123 - inorganic pyrophosphatase 2065 47.70 0 2279844..2280191 - 115 147675679 - VC0395_A2124 - hypothetical protein 2066 50.70 0 2280202..2283966 - 1254 147675087 - VC0395_A2125 - hypothetical protein 2067 49.51 0 2283963..2285711 - 582 147673985 - VC0395_A2126 - hypothetical protein 2068 53.21 +1 2285857..2286495 + 212 147673057 msrA VC0395_A2127 - methionine sulfoxide reductase A 2069 49.09 0 2286577..2287128 + 183 147675328 - VC0395_A2128 - hypothetical protein 2070 50.65 0 2287346..2287651 + 101 147674516 - VC0395_A2129 - hypothetical protein 2071 48.01 0 2287701..2288429 + 242 147674085 - VC0395_A2130 - hypothetical protein 2072 50.63 0 2288511..2289227 + 238 147674984 - VC0395_A2131 - ABC transporter, ATP-binding protein 2073 51.11 0 2289218..2290483 + 421 147673184 - VC0395_A2132 - hypothetical protein 2074 47.51 0 2290536..2291057 + 173 147673765 - VC0395_A2133 - hypothetical protein 2075 50.17 0 2291680..2292267 + 195 147674700 - VC0395_A2134 - hypothetical protein 2076 53.40 +1 2292340..2292987 - 215 147675279 cysC VC0395_A2135 - adenylylsulfate kinase 2077 48.99 0 2292998..2294428 - 476 147673489 cysN VC0395_A2136 - sulfate adenylyltransferase subunit 1 2078 49.17 0 2294446..2295354 - 302 147674260 cysD VC0395_A2137 - sulfate adenylyltransferase subunit 2 2079 55.33 +1 2295457..2296356 - 299 147675164 cysG VC0395_A2138 - uroporphyrin-III C-methyltransferase 2080 48.88 0 2296557..2298602 + 681 147675775 cpdB VC0395_A2139 - bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein 2081 50.35 0 2298721..2299290 + 189 147674395 - VC0395_A2140 - hypothetical protein 2082 50.90 0 2299293..2300675 - 460 147673597 dbpA VC0395_A2141 - ATP-dependent RNA helicase DbpA 2083 48.67 0 2300901..2301350 + 149 147674368 - VC0395_A2142 - acetyltransferase 2084 51.12 0 2301353..2302246 + 297 147673569 - VC0395_A2143 - drug/metabolite exporter family protein 2085 45.30 0 2302681..2302797 + 38 147674545 - VC0395_A2144 - hypothetical protein 2086 50.89 0 2302988..2303608 + 206 147673755 fklB VC0395_A2145 - peptidyl-prolyl cis-trans isomerase, FKBP-type 2087 38.81 -2 2303785..2304222 + 145 147673367 tnpA VC0395_A2146 - IS1004 transposase 2088 45.34 0 2304366..2304848 + 160 147675514 - VC0395_A2147 - hypothetical protein 2089 49.10 0 2304992..2305378 - 128 147674916 rplQ VC0395_A2148 - 50S ribosomal protein L17 2090 47.03 0 2305405..2306397 - 330 147674278 rpoA VC0395_A2149 - DNA-directed RNA polymerase subunit alpha 2091 46.54 0 2306422..2307042 - 206 147675276 rpsD VC0395_A2150 - 30S ribosomal protein S4 2092 50.26 0 2307070..2307459 - 129 147673111 rpsK VC0395_A2151 - 30S ribosomal protein S11 2093 47.34 0 2307479..2307835 - 118 147674839 rpsM VC0395_A2152 - 30S ribosomal protein S13 2094 45.61 0 2307985..2308098 - 37 147675535 rpmJ VC0395_A2153 - 50S ribosomal protein L36 2095 45.62 0 2308137..2309471 - 444 147673663 secY VC0395_A2154 - preprotein translocase subunit SecY 47.83 MEAN 3.88 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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