version 1.0
Vibrio cholerae O395 chromosome 2, complete sequence - 1..3024069 2742 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1963 52.41 +1 2165155..2166585 - 476 147674683 - VC0395_A2014 - bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase 1964 51.77 +1 2166649..2169495 - 948 147673756 glnE VC0395_A2015 - bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 1965 49.77 0 2169619..2170920 - 433 147673263 - VC0395_A2016 - methyl-accepting chemotaxis protein 1966 45.39 0 2171042..2171182 - 46 147675584 - VC0395_A2017 - hypothetical protein 1967 49.74 0 2171358..2172875 - 505 147675057 - VC0395_A2018 - hypothetical protein 1968 46.00 0 2173075..2173761 + 228 147674107 - VC0395_A2019 - hypothetical protein 1969 49.69 0 2173865..2175166 + 433 147675437 - VC0395_A2020 - pho4 family protein 1970 47.78 0 2175333..2175941 + 202 147674643 - VC0395_A2021 - hypothetical protein 1971 49.81 0 2176033..2176803 - 256 147675429 - VC0395_A2022 - putative general secretion pathway protein B 1972 51.89 +1 2176803..2178392 - 529 147674552 exeA VC0395_A2023 - general secretion pathway protein A 1973 53.96 +1 2178485..2179696 + 403 147674076 cca VC0395_A2024 - multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase 1974 47.93 0 2179798..2181099 - 433 147675028 eno VC0395_A2025 - phosphopyruvate hydratase 1975 49.45 0 2181178..2182815 - 545 147675626 pyrG VC0395_A2026 - CTP synthetase 1976 35.46 -2 2182901..2183041 + 46 147675402 - VC0395_A2027 - hypothetical protein 1977 47.67 0 2183090..2183926 - 278 147673315 mazG VC0395_A2028 - nucleoside triphosphate pyrophosphohydrolase 1978 51.74 +1 2184005..2186221 - 738 147673921 relA VC0395_A2029 - GTP pyrophosphokinase 1979 50.57 0 2186285..2187607 - 440 147674864 rumA VC0395_A2030 - 23S rRNA 5-methyluridine methyltransferase 1980 50.75 0 2187779..2190562 + 927 147673482 - VC0395_A2032 - hybrid sensory histidine kinase BarA 1981 47.33 0 2190550..2191842 - 430 147674222 - VC0395_A2031 - GGDEF family protein 1982 47.45 0 2191835..2192245 - 136 147673797 - VC0395_A2033 - hypothetical protein 1983 49.59 0 2192255..2193601 - 448 147674675 - VC0395_A2034 - hypothetical protein 1984 49.87 0 2193804..2194184 - 126 147675265 acpS VC0395_A2035 - 4'-phosphopantetheinyl transferase 1985 51.64 0 2194188..2194919 - 243 147675577 pdxJ VC0395_A2036 - pyridoxal phosphate biosynthetic protein PdxJ 1986 49.59 0 2194916..2195641 - 241 147673381 recO VC0395_A2037 - DNA repair protein RecO 1987 49.03 0 2195711..2196685 - 324 147674346 era VC0395_A2038 - GTP-binding protein Era 1988 49.56 0 2196678..2197355 - 225 147674970 rnc VC0395_A2039 - ribonuclease III 1989 49.28 0 2197387..2198283 - 298 147675126 lepB VC0395_A2040 - signal peptidase I 1990 50.72 0 2198375..2200168 - 597 147673257 lepA VC0395_A2041 - GTP-binding protein LepA 1991 51.17 0 2200281..2200751 - 156 147674010 rseC VC0395_A2042 - sigma-E factor regulatory protein RseC 1992 50.16 0 2200748..2201698 - 316 147674099 rseB VC0395_A2043 - periplasmic negative regulator of sigmaE 1993 49.77 0 2201695..2202333 - 212 147673480 rseA VC0395_A2044 - sigma-E factor negative regulatory protein RseA 1994 44.85 0 2202347..2202919 - 190 147675349 rpoE VC0395_A2045 - RNA polymerase sigma factor RpoE 1995 50.94 0 2203380..2205032 + 550 147674681 nadB VC0395_A2046 - L-aspartate oxidase 1996 50.11 0 2205057..2205503 - 148 147673734 - VC0395_A2047 - hypothetical protein 1997 48.28 0 2205451..2205711 - 86 147673136 - VC0395_A2048 - hypothetical protein 1998 51.23 0 2205864..2206835 + 323 147675445 - VC0395_A2049 - hypothetical protein 1999 44.02 0 2207442..2207675 + 77 147674699 - VC0395_A2050 - hypothetical protein 2000 53.09 +1 2207776..2209005 - 409 147673773 visC VC0395_A2051 - 2-octaprenyl-6-methoxyphenol hydroxylase 2001 53.10 +1 2209017..2210225 - 402 147673178 ubiH VC0395_A2052 - 2-octaprenyl-6-methoxyphenyl hydroxylase 2002 48.26 0 2210246..2210821 - 191 147673888 - VC0395_A2053 - hypothetical protein 2003 45.31 0 2211063..2211371 + 102 147673126 - VC0395_A2054 - hypothetical protein 2004 50.60 0 2211571..2212155 + 194 147675713 - VC0395_A2055 - hypothetical protein 2005 49.47 0 2212265..2212921 + 218 147675007 rpiA VC0395_A2056 - ribose-5-phosphate isomerase A 2006 49.19 0 2213175..2214404 + 409 147673205 serA VC0395_A2057 - D-3-phosphoglycerate dehydrogenase 2007 49.90 0 2214636..2215130 - 164 147674009 ilvH VC0395_A2058 - acetolactate synthase 3 regulatory subunit 2008 47.85 0 2215132..2216853 - 573 147674433 ilvI VC0395_A2059 - acetolactate synthase 3 catalytic subunit 2009 46.35 0 2217338..2219143 - 601 147675212 - VC0395_A2060 - putative long-chain-fatty-acid--CoA ligase 2010 47.72 0 2219320..2220285 - 321 147675366 leuO VC0395_A2061 - leucine transcriptional activator 2011 43.16 -1 2220585..2221673 - 362 147673059 - VC0395_A2062 - hypothetical protein 2012 47.67 0 2221670..2222206 - 178 147674707 - VC0395_A2063 - hypothetical protein 2013 42.61 -1 2222333..2222968 - 211 147675438 - VC0395_A2064 - TetR family transcriptional regulator 2014 48.03 0 2223351..2224901 + 516 147673148 leuA VC0395_A2065 - 2-isopropylmalate synthase 2015 51.19 0 2225013..2226104 + 363 147674369 leuB VC0395_A2066 - 3-isopropylmalate dehydrogenase 2016 51.07 0 2226162..2227565 + 467 147674703 leuC VC0395_A2067 - isopropylmalate isomerase large subunit 2017 47.10 0 2227581..2228183 + 200 147675448 leuD VC0395_A2068 - isopropylmalate isomerase small subunit 2018 42.55 -1 2228284..2229075 + 263 147675458 - VC0395_A2069 - hypothetical protein 2019 35.00 -2 2234628..2234747 - 39 147674909 - VC0395_A2077 - hypothetical protein 2020 44.10 0 2235096..2236349 - 417 147675731 - VC0395_A2078 - hypothetical protein 2021 47.83 0 2236774..2237256 + 160 147675223 - VC0395_A2080 - hypothetical protein 2022 47.25 0 2237360..2238430 - 356 147674275 - VC0395_A2081 - hypothetical protein 2023 46.68 0 2238434..2239534 - 366 147673657 - VC0395_A2082 - hypothetical protein 2024 50.26 0 2239728..2241239 + 503 147675524 pepA VC0395_A2083 - leucyl aminopeptidase 2025 49.78 0 2241323..2241772 + 149 147674807 holC VC0395_A2084 - DNA polymerase III subunit chi 2026 50.49 0 2241866..2244727 + 953 147674393 valS VC0395_A2085 - valyl-tRNA synthetase 2027 51.02 0 2244805..2245782 - 325 147673560 - VC0395_A2086 - 2-hydroxyacid dehydrogenase family protein 2028 48.92 0 2245822..2246559 - 245 147673149 rluA-1 VC0395_A2087 - ribosomal large subunit pseudouridine synthase A 2029 52.13 +1 2246656..2249565 - 969 147673548 hepA VC0395_A2088 - ATP-dependent helicase HepA 2030 46.49 0 2249800..2249913 - 37 147674124 - VC0395_A2089 - hypothetical protein 2031 51.13 0 2249987..2251363 + 458 147674923 - VC0395_A2090 - hypothetical protein 2032 50.25 0 2251513..2252517 + 334 147675468 argF VC0395_A2091 - ornithine carbamoyltransferase 2033 49.14 0 2252704..2253696 + 330 147675497 pyrB VC0395_A2092 - aspartate carbamoyltransferase catalytic subunit 2034 47.65 0 2253708..2254175 + 155 147673435 pyrI VC0395_A2093 - aspartate carbamoyltransferase regulatory subunit 2035 50.51 0 2254280..2254669 + 129 147673847 - VC0395_A2094 - hypothetical protein 2036 49.36 0 2254750..2255535 - 261 147674609 plsC VC0395_A2095 - 1-acyl-sn-glycerol-3-phosphate acyltransferase 2037 51.59 0 2255557..2256816 - 419 147674274 murA VC0395_A2096 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2038 43.92 -1 2256824..2257078 - 84 147673378 - VC0395_A2097 - BolA family protein 2039 43.03 -1 2257071..2257400 - 109 147675756 - VC0395_A2098 - putative anti-sigma B factor antagonist 2040 48.13 0 2257397..2258038 - 213 147674971 - VC0395_A2099 - hypothetical protein 2041 46.54 0 2258039..2258530 - 163 147673144 - VC0395_A2100 - hypothetical protein 2042 53.80 +1 2258533..2259309 - 258 147675288 - VC0395_A2101 - hypothetical protein 2043 50.37 0 2259314..2260117 - 267 147674625 - VC0395_A2102 - ABC transporter, ATP-binding protein 2044 49.95 0 2260674..2261672 + 332 147673866 - VC0395_A2103 - hypothetical protein 2045 49.75 0 2261722..2262702 + 326 147674957 - VC0395_A2104 - hypothetical protein 2046 48.03 0 2262702..2263259 + 185 147674151 - VC0395_A2105 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 2047 45.16 0 2263262..2263819 + 185 147673200 - VC0395_A2106 - hypothetical protein 2048 45.00 0 2263755..2264294 + 179 147675161 - VC0395_A2107 - hypothetical protein 2049 51.24 0 2264297..2265022 + 241 147674741 - VC0395_A2108 - ABC transporter, ATP-binding protein 2050 49.66 0 2265078..2266541 + 487 147673900 rpoN VC0395_A2109 - RNA polymerase factor sigma-54 2051 40.97 -1 2266566..2266853 + 95 147674193 - VC0395_A2110 - putative sigma-54 modulation protein 2052 47.87 0 2266856..2267302 + 148 147674862 ptsN VC0395_A2111 - PTS system, nitrogen regulatory IIA component 2053 50.75 0 2267315..2268175 + 286 147674314 - VC0395_A2112 - hypothetical protein 2054 51.97 +1 2268184..2268462 + 92 147674555 ptsO VC0395_A2113 - phosphocarrier protein NPr 2055 53.16 +1 2268623..2269984 + 453 147675153 mgtE-2 VC0395_A2114 - magnesium transporter 2056 50.30 0 2270057..2271400 - 447 147673242 pmbA VC0395_A2115 - peptidase PmbA 2057 49.14 0 2271499..2272080 + 193 147673507 - VC0395_A2116 - hypothetical protein 2058 52.16 +1 2272184..2272900 - 238 147674110 - VC0395_A2117 - putative thiamine ABC transporter, ATP-binding protein 2059 52.54 +1 2272912..2274504 - 530 147675055 thiP VC0395_A2118 - thiamine transporter membrane protein 2060 50.45 0 2274514..2275506 - 330 147675627 tbpA VC0395_A2119 - thiamine transporter substrate binding subunit 2061 54.87 +1 2275768..2276403 - 211 147673199 ubiX VC0395_A2120 - aromatic acid decarboxylase 2062 50.74 0 2276410..2277765 - 451 147675374 mpl VC0395_A2121 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 47.83 MEAN 3.88 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.