version 1.0
Vibrio cholerae O395 chromosome 2, complete sequence - 1..3024069 2742 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 151 47.68 0 164071..165534 - 487 147673807 dacB VC0395_A0161 - D-alanyl-D-alanine carboxypeptidase/endopeptidase 152 45.87 0 165614..166666 - 350 147674883 ompU VC0395_A0162 - outer membrane protein OmpU 153 44.65 0 167192..167668 + 158 147675665 greA VC0395_A0163 - transcription elongation factor GreA 154 43.43 -1 167745..168041 - 98 147673609 - VC0395_A0164 - hypothetical protein 155 44.92 0 168161..168790 + 209 147673945 rrmJ VC0395_A0165 - 23S rRNA methyltransferase J 156 47.85 0 168891..170846 + 651 147673292 ftsH VC0395_A0166 - cell division protein FtsH 157 45.88 0 170913..171749 + 278 147674024 folP VC0395_A0167 - dihydropteroate synthase 158 47.87 0 171775..173115 + 446 147674754 glmM VC0395_A0168 - phosphoglucosamine mutase 159 45.24 0 173372..173707 + 111 147675589 secG VC0395_A0169 - preprotein translocase subunit SecG 160 44.96 0 174138..174593 + 151 147673580 - VC0395_A0172 - hypothetical protein 161 47.98 0 174612..176099 + 495 147674353 nusA VC0395_A0173 - transcription elongation factor NusA 162 49.35 0 176124..178820 + 898 147675225 infB VC0395_A0174 - translation initiation factor IF-2 163 48.66 0 178910..179320 + 136 147673152 rbfA VC0395_A0175 - ribosome-binding factor A 164 51.76 +1 179320..180258 + 312 147675140 truB VC0395_A0176 - tRNA pseudouridine synthase B 165 47.78 0 180400..180669 + 89 147675292 rpsO VC0395_A0177 - 30S ribosomal protein S15 166 49.56 0 181032..183170 + 712 147674727 pnp VC0395_A0178 - polynucleotide phosphorylase/polyadenylase 167 49.89 0 183286..184197 + 303 147674411 - VC0395_A0179 - lipoprotein NlpI 168 45.00 0 184284..184703 + 139 147674022 - VC0395_A0180 - MarR family transcriptional regulator 169 50.56 0 184746..186086 + 446 147673240 vmrA VC0395_A0181 - multidrug efflux pump VmrA 170 48.12 0 186139..187017 - 292 147674830 - VC0395_A0182 - hypothetical protein 171 50.10 0 187029..188042 - 337 147673781 - VC0395_A0183 - putative protease 172 47.54 0 188150..190204 - 684 147673182 - VC0395_A0184 - PAS/GGDEF domain-containing protein 173 44.13 0 190437..190964 + 175 147674979 - VC0395_A0185 - hypothetical protein 174 50.99 0 190948..191451 + 167 147674103 - VC0395_A0186 - putative acetyltransferase 175 50.49 0 191562..191969 + 135 147675574 holD VC0395_A0187 - DNA polymerase III subunit psi 176 47.33 0 191930..192415 + 161 147674031 rimI VC0395_A0189 - ribosomal-protein-alanine acetyltransferase 177 47.13 0 192404..194461 - 685 147673612 - VC0395_A0188 - GGDEF domain-containing protein 178 50.19 0 194665..196260 + 531 147674859 prfC VC0395_A0190 - peptide chain release factor 3 179 51.81 +1 196365..197636 - 423 147674594 srmB VC0395_A0191 - ATP-dependent RNA helicase SrmB 180 48.55 0 197724..198446 - 240 147675421 - VC0395_A0192 - hypothetical protein 181 49.54 0 198755..200068 + 437 147673070 brnQ VC0395_A0193 - branched chain amino acid transport system II carrier protein 182 48.78 0 200437..201336 + 299 147673826 prfB VC0395_A0194 - peptide chain release factor 2 183 49.77 0 201361..202899 + 512 147674731 lysS VC0395_A0195 - lysyl-tRNA synthetase 184 48.61 0 203173..204507 + 444 147675556 - VC0395_A0196 - sigma-54 dependent transcriptional regulator 185 35.66 -2 204644..204772 + 42 147674721 - VC0395_A0197 - hypothetical protein 186 48.89 0 205022..205336 + 104 147675388 - VC0395_A0198 - hypothetical protein 187 46.84 0 205374..206432 - 352 147673112 - VC0395_A0199 - aldo/keto reductase family oxidoreductase TAS 188 52.10 +1 206625..207290 - 221 147673814 mutH VC0395_A0200 - DNA mismatch repair protein 189 38.89 -2 207312..207455 - 47 147674981 - VC0395_A0201 - hypothetical protein 190 35.37 -2 207752..207898 + 48 147675711 - VC0395_A0202 - hypothetical protein 191 46.74 0 207858..208439 + 193 147674319 - VC0395_A0203 - dinucleoside polyphosphate hydrolase 192 48.73 0 208442..210688 + 748 147673679 ptsP VC0395_A0204 - fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain-containing protein 193 47.30 0 210698..211492 + 264 147675364 - VC0395_A0205 - hypothetical protein 194 48.90 0 211521..212336 + 271 147674969 lgt VC0395_A0206 - prolipoprotein diacylglyceryl transferase 195 45.89 0 212346..213197 + 283 147673512 thyA VC0395_A0207 - thymidylate synthase 196 48.04 0 213290..214438 - 382 147673742 ntpA VC0395_A0208 - nptA protein 197 43.77 -1 214833..215723 + 296 147674750 nhaR VC0395_A0209 - transcriptional activator NhaR 198 46.12 0 215990..216247 + 85 147675700 hlyU VC0395_A0210 - transcriptional activator HlyU 199 47.51 0 216316..216576 - 86 147673748 rpsT VC0395_A0211 - 30S ribosomal protein S20 200 47.97 0 216819..218396 + 525 147674115 mviN VC0395_A0212 - MviN protein 201 50.46 0 218465..219433 + 322 147675076 ribF VC0395_A0213 - bifunctional riboflavin kinase/FMN adenylyltransferase 202 50.28 0 219464..222313 + 949 147675239 ileS VC0395_A0214 - isoleucyl-tRNA synthetase 203 49.42 0 222329..222844 + 171 147674341 lspA VC0395_A0215 - lipoprotein signal peptidase 204 49.66 0 223007..223441 + 144 147674041 fkpB VC0395_A0216 - peptidyl-prolyl cis-trans isomerase, FKBP-type 205 50.67 0 223476..224438 + 320 147673232 ispH VC0395_A0217 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 206 50.24 0 224575..226059 - 494 147673650 - VC0395_A0218 - putative carbon starvation protein A 207 46.20 0 226312..226653 + 113 147674079 - VC0395_A0219 - putative lipoprotein 208 50.97 0 226672..228468 + 598 147674441 - VC0395_A0220 - hypothetical protein 209 53.79 +1 228492..229415 - 307 147675680 - VC0395_A0221 - N-acetylmuramic acid-6-phosphate etherase 210 53.55 +1 229433..230545 - 370 147673249 anmK VC0395_A0222 - anhydro-N-acetylmuramic acid kinase 211 52.17 +1 230651..231643 + 330 147673776 nagZ VC0395_A0223 - beta-hexosaminidase 212 47.90 0 231670..232383 - 237 147674462 - VC0395_A0224 - putative two-component response-regulatory protein YehT 213 48.96 0 232393..234069 - 558 147675427 - VC0395_A0225 - hypothetical protein 214 48.98 0 234311..235384 + 357 147673285 aroF VC0395_A0226 - phospho-2-dehydro-3-deoxyheptonate aldolase 215 49.47 0 235397..236524 + 375 147674187 tyrA VC0395_A0227 - bifunctional chorismate mutase/prephenate dehydrogenase 216 46.77 0 236591..236962 - 123 147674608 - VC0395_A0228 - hypothetical protein 217 50.60 0 237133..238800 - 555 147675380 - VC0395_A0229 - putative ABC transporter ATP-binding protein 218 47.20 0 239162..241108 + 648 147673203 slt VC0395_A0230 - soluble lytic murein transglycosylase 219 49.30 0 241118..241474 + 118 147673635 - VC0395_A0231 - Trp operon repressor 220 48.76 0 241552..242076 - 174 147673906 - VC0395_A0232 - NTPase 221 44.99 0 242024..244399 - 791 147674861 - VC0395_A0233 - signal protein domain/GGDEF domain-containing protein 222 46.85 0 244383..245462 - 359 147674245 - VC0395_A0234 - putative spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein 223 47.11 0 245605..246780 - 391 147674498 pheA VC0395_A0235 - chorismate mutase/prephenate dehydratase 224 42.81 -1 247020..247346 - 108 147675178 - VC0395_A0236 - putative sigma-54 modulation protein 225 48.03 0 247747..248508 - 253 147675286 - VC0395_A0237 - putative lipoprotein 226 50.36 0 248627..249601 + 324 147673459 rluD VC0395_A0238 - 23S rRNA pseudouridine synthase D 227 50.35 0 249604..250326 + 240 147674392 - VC0395_A0239 - hypothetical protein 228 49.73 0 250451..253024 + 857 147675005 clpB-1 VC0395_A0240 - clpB protein 229 43.83 -1 258928..259251 + 107 147673086 - VC0395_A0248 - hypothetical protein 230 45.50 0 259261..259983 + 240 147675451 frp VC0395_A0249 - nitroreductase A 231 48.24 0 260018..260272 - 84 147673050 - VC0395_A0250 - ferredoxin 232 49.54 0 260275..261675 - 466 147674148 - VC0395_A0251 - putative protease 233 49.62 0 261826..262740 - 304 147673880 rdgC VC0395_A0252 - recombination associated protein 234 49.86 0 262977..263666 + 229 147674650 phoB VC0395_A0253 - DNA-binding response regulator PhoB 235 51.46 0 263688..264989 + 433 147675436 phoR VC0395_A0254 - phosphate regulon sensor protein 236 52.56 +1 264986..265963 + 325 147673708 - VC0395_A0255 - putative phosphate ABC transporter, periplasmic phosphate-binding protein 237 47.50 0 266031..267533 - 500 147673098 ppx VC0395_A0256 - exopolyphosphatase 238 46.87 0 267514..269619 - 701 147674904 ppk VC0395_A0257 - polyphosphate kinase 239 50.41 0 269818..272013 + 731 147675548 pstC-1 VC0395_A0258 - phosphate ABC transporter, permease protein 240 49.42 0 272023..273669 + 548 147674308 pstA-1 VC0395_A0259 - phosphate ABC transporter, permease protein 241 49.76 0 273672..274493 + 273 147673468 pstB-1 VC0395_A0260 - phosphate ABC transporter, ATP-binding protein 242 48.38 0 274527..275237 + 236 147674474 phoU VC0395_A0261 - transcriptional regulator PhoU 243 50.06 0 275298..276074 - 258 147675249 - VC0395_A0262 - hypothetical protein 244 50.85 0 276277..277041 - 254 147673970 cutC VC0395_A0263 - copper homeostasis protein 245 46.15 0 277376..277999 - 207 147673354 - VC0395_A0264 - anti-oxidant AhpCTSA family protein 246 47.68 0 278203..279108 + 301 147673590 - VC0395_A0265 - LysR family transcriptional regulator 247 49.37 0 279659..281329 + 556 147675709 aceB VC0395_A0266 - malate synthase 248 51.45 0 281459..282772 + 437 147675086 aceA VC0395_A0267 - isocitrate lyase 249 51.76 +1 282925..283434 - 169 147673820 - VC0395_A0268 - hypothetical protein 250 50.42 0 283664..284722 + 352 147675363 queA VC0395_A0269 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase 47.83 MEAN 3.88 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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