version 1.0
Vibrio cholerae O395 chromosome 2, complete sequence - 1..3024069 2742 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1813 52.29 +1 1981604..1982737 - 377 162329621 proB VC0395_A1864 - gamma-glutamyl kinase 1814 47.69 0 1982858..1983247 - 129 147673803 crl VC0395_A1865 - DNA-binding transcriptional regulator Crl 1815 48.40 0 1983381..1984628 - 415 147675488 frsA VC0395_A1866 - fermentation/respiration switch protein 1816 47.74 0 1984725..1985189 - 154 147675317 gpt VC0395_A1867 - xanthine-guanine phosphoribosyltransferase 1817 49.34 0 1985227..1986519 - 430 147675075 - VC0395_A1868 - hypothetical protein 1818 48.72 0 1987265..1988869 + 534 147674070 pepD VC0395_A1869 - aminoacyl-histidine dipeptidase 1819 46.40 0 1989103..1989546 + 147 147673192 - VC0395_A1870 - hypothetical protein 1820 50.22 0 1989543..1990448 + 301 147675637 rimK VC0395_A1871 - ribosomal protein S6 modification protein 1821 48.85 0 1990408..1991496 + 362 147675459 - VC0395_A1872 - hypothetical protein 1822 48.30 0 1991565..1992920 - 451 147673593 - VC0395_A1873 - sodium-dependent transporter 1823 44.60 0 1993077..1994594 - 505 147675568 - VC0395_A1874 - GGDEF family protein 1824 43.19 -1 1994658..1995428 - 256 147674779 - VC0395_A1875 - hypothetical protein 1825 46.91 0 1995674..1996756 - 360 147674154 dinP VC0395_A1876 - DNA polymerase IV 1826 49.57 0 1996865..1997098 - 77 147673696 - VC0395_A1877 - hypothetical protein 1827 46.01 0 1997115..1998218 - 367 147673710 apbE VC0395_A1878 - thiamin biosynthesis lipoprotein ApbE 1828 46.94 0 1998265..1999491 - 408 147675137 nqrF VC0395_A1879 - Na(+)-translocating NADH-quinone reductase subunit F 1829 46.06 0 1999525..2000121 - 198 147674521 nqrE VC0395_A1880 - Na(+)-translocating NADH-quinone reductase subunit E 1830 45.34 0 2000129..2000761 - 210 147673905 nqrD VC0395_A1881 - Na(+)-translocating NADH-quinone reductase subunit D 1831 47.03 0 2000761..2001534 - 257 147673911 nqrC VC0395_A1882 - Na(+)-translocating NADH-quinone reductase subunit C 1832 49.92 0 2001521..2002768 - 415 147674588 nqrB VC0395_A1883 - Na(+)-translocating NADH-quinone reductase subunit B 1833 48.45 0 2002774..2004162 - 462 147674300 nqrA VC0395_A1884 - Na(+)-translocating NADH-quinone reductase subunit A 1834 47.66 0 2004599..2004919 - 106 147674547 bolA VC0395_A1885 - bolA protein 1835 45.32 0 2004964..2006214 + 416 147675117 - VC0395_A1886 - hypothetical protein 1836 46.22 0 2006211..2006831 + 206 147673359 - VC0395_A1887 - putative lipoprotein 1837 48.55 0 2006788..2007372 + 194 147673347 ppiA VC0395_A1888 - peptidyl-prolyl cis-trans isomerase A 1838 47.88 0 2007441..2008829 + 462 147673933 - VC0395_A1889 - putative ampG protein 1839 48.75 0 2008917..2009597 - 226 147675664 - VC0395_A1890 - putative transcriptional activator 1840 45.98 0 2009594..2010178 - 194 147673682 - VC0395_A1891 - RNA polymerase sigma factor 1841 45.02 0 2010269..2010850 - 193 147675044 - VC0395_A1892 - hypothetical protein 1842 43.43 -1 2011088..2011978 + 296 147674324 ompK VC0395_A1893 - nucleoside-specific channel-forming protein 1843 49.94 0 2012117..2013007 + 296 147675273 panE VC0395_A1894 - 2-dehydropantoate 2-reductase 1844 54.62 +1 2013004..2013609 + 201 147675570 thiJ VC0395_A1895 - 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme 1845 52.35 +1 2013593..2014807 + 404 147673408 - VC0395_A1896 - aminotransferase, class V 1846 51.03 0 2014877..2015311 - 144 147674303 - VC0395_A1897 - hypothetical protein 1847 49.27 0 2015316..2016137 - 273 147675632 - VC0395_A1898 - HesA/MoeB/ThiF family protein 1848 49.86 0 2016229..2017335 - 368 147673142 mltA VC0395_A1899 - murein transglycosylase A 1849 42.96 -1 2017406..2017810 - 134 147673802 - VC0395_A1900 - hypothetical protein 1850 49.45 0 2018048..2019418 + 456 147674698 argA VC0395_A1901 - N-acetylglutamate synthase 1851 44.09 0 2019645..2019830 + 61 147675559 - VC0395_A1902 - hypothetical protein 1852 52.48 +1 2019860..2021980 - 706 147674978 recD VC0395_A1903 - exodeoxyribonuclease V, 67 kDa subunit 1853 54.01 +1 2021977..2025603 - 1208 147674146 recB VC0395_A1904 - exodeoxyribonuclease V, 135 kDa subunit 1854 52.60 +1 2025868..2029314 - 1148 147673707 recC VC0395_A1905 - exonuclease V subunit gamma 1855 53.25 +1 2029535..2030503 - 322 147675376 - VC0395_A1906 - hypothetical protein 1856 50.16 0 2030614..2031528 + 304 147674585 - VC0395_A1907 - LysR family transcriptional regulator 1857 50.81 0 2031644..2031952 + 102 147674235 - VC0395_A1908 - hypothetical protein 1858 53.78 +1 2032262..2033293 + 343 147673636 dapD VC0395_A1909 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 1859 51.65 0 2033375..2034619 - 414 147673068 - VC0395_A1910 - hypothetical protein 1860 49.18 0 2034722..2035813 - 363 147675158 - VC0395_A1911 - acetyltransferase 1861 49.10 0 2036018..2037469 + 483 147674943 - VC0395_A1912 - hypothetical protein 1862 48.17 0 2037659..2038642 + 327 147673395 - VC0395_A1913 - hypothetical protein 1863 49.66 0 2038626..2039213 + 195 147675371 - VC0395_A1915 - hypothetical protein 1864 50.14 0 2039210..2039554 - 114 147674584 - VC0395_A1914 - hypothetical protein 1865 51.79 +1 2039713..2040720 + 335 147675743 - VC0395_A1916 - LacI family transcription regulator 1866 51.36 0 2040732..2043866 - 1044 147673874 lacZ VC0395_A1917 - beta-D-galactosidase 1867 51.27 0 2044189..2045331 + 380 147675324 - VC0395_A1918 - putative transporter 1868 45.89 0 2045467..2046621 + 384 147674678 - VC0395_A1919 - hypothetical protein 1869 46.75 0 2046821..2048512 + 563 147673766 - VC0395_A1920 - putative long-chain-fatty-acid--CoA ligase 1870 47.17 0 2048626..2050713 - 695 147673153 fusA-2 VC0395_A1921 - elongation factor G 1871 49.57 0 2050984..2052363 - 459 147673564 radA VC0395_A1922 - DNA repair protein RadA 1872 47.26 0 2052491..2054830 + 779 147673923 - VC0395_A1923 - hypothetical protein 1873 49.65 0 2055035..2056021 - 328 147674858 serB VC0395_A1924 - phosphoserine phosphatase 1874 47.44 0 2056118..2056741 + 207 147675400 - VC0395_A1925 - putative smp protein 1875 48.76 0 2056823..2057548 - 241 147673694 deoD VC0395_A1926 - purine nucleoside phosphorylase 1876 50.78 0 2057631..2058851 - 406 147674309 deoB VC0395_A1927 - phosphopentomutase 1877 52.59 +1 2058869..2060296 - 475 147673836 deoA VC0395_A1928 - thymidine phosphorylase 1878 48.46 0 2060303..2061082 - 259 147674428 deoC VC0395_A1929 - deoxyribose-phosphate aldolase 1879 49.21 0 2061184..2061372 + 62 147675563 - VC0395_A1930 - hypothetical protein 1880 48.77 0 2061684..2062940 - 418 147673370 - VC0395_A1931 - NupC family protein 1881 50.35 0 2063127..2063978 - 283 147674354 - VC0395_A1932 - hypothetical protein 1882 48.61 0 2063923..2064066 - 47 147673145 - VC0395_A1933 - hypothetical protein 1883 45.35 0 2064093..2064866 - 257 147675020 - VC0395_A1934 - hypothetical protein 1884 48.71 0 2065030..2066460 - 476 147674420 - VC0395_A1935 - sodium/alanine symporter 1885 41.88 -1 2067099..2067332 + 77 147674976 - VC0395_A1936 - hypothetical protein 1886 42.68 -1 2067476..2068117 - 213 147675579 - VC0395_A1937 - hypothetical protein 1887 48.75 0 2068117..2068797 - 226 147675455 ung VC0395_A1938 - uracil-DNA glycosylase 1888 47.97 0 2069166..2070026 - 286 147674847 nfo VC0395_A1939 - endonuclease IV 1889 48.15 0 2070372..2070749 + 125 147674239 - VC0395_A1940 - autonomous glycyl radical cofactor GrcA 1890 49.57 0 2070829..2072109 - 426 147673667 thrC VC0395_A1941 - threonine synthase 1891 52.14 +1 2072106..2073062 - 318 147673067 thrB VC0395_A1942 - homoserine kinase 1892 50.04 0 2073083..2075560 - 825 147674796 thrA VC0395_A1943 - bifunctional aspartokinase I/homeserine dehydrogenase I 1893 46.79 0 2076090..2076572 + 160 147673558 - VC0395_A1945 - hypothetical protein 1894 45.19 0 2076569..2077057 - 162 147674216 - VC0395_A1944 - ribonuclease activity regulator protein RraA 1895 43.75 -1 2077084..2077467 - 127 147675746 - VC0395_A1946 - hypothetical protein 1896 47.56 0 2077782..2078498 + 238 147674429 fexA VC0395_A1947 - two-component response regulator 1897 46.82 0 2078557..2080914 - 785 147673942 fexB VC0395_A1948 - aerobic respiration control sensor protein ArcB 1898 49.43 0 2081021..2082760 - 579 147673373 - VC0395_A1949 - sensory box/GGDEF family protein 1899 50.05 0 2082828..2083778 - 316 147675264 - VC0395_A1950 - hypothetical protein 1900 31.67 -2 2083800..2083919 - 39 147674811 - VC0395_A1951 - hypothetical protein 1901 51.97 +1 2084297..2088889 + 1530 147674370 gltB-1 VC0395_A1952 - glutamate synthase, large subunit 1902 52.38 +1 2088890..2090359 + 489 147675131 gltD VC0395_A1953 - glutamate synthase subunit beta 1903 52.96 +1 2090887..2095350 + 1487 147675611 gltB VC0395_A1954 - glutamate synthase subunit alpha 1904 52.54 +1 2095366..2096781 + 471 147674672 gltD VC0395_A1955 - glutamate synthase subunit beta 1905 50.57 0 2096968..2097402 + 144 147674365 - VC0395_A1956 - hypothetical protein 1906 49.86 0 2097490..2098185 + 231 147673439 pfs VC0395_A1957 - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1907 52.10 +1 2098198..2099151 + 317 147673669 - VC0395_A1958 - adenosylcobinamide-phosphate synthase 1908 50.78 0 2099152..2099982 + 276 147675710 - VC0395_A1959 - hypothetical protein 1909 53.78 +1 2100065..2100685 + 206 147673769 - VC0395_A1960 - hypothetical protein 1910 51.65 0 2101627..2102412 - 261 147673176 - VC0395_A1961 - hypothetical protein 1911 32.00 -2 2102874..2103845 + 323 147673179 - VC0395_A1962 - RNA-directed DNA polymerase 1912 31.33 -2 2103846..2104643 + 265 147673450 - VC0395_A1963 - hypothetical protein 47.83 MEAN 3.88 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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