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Vibrio cholerae O395 chromosome 2, complete sequence - 1..3024069 2742 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1765 47.51 0 1930203..1931225 + 340 147674574 - VC0395_A1816 - pseudouridine synthase family 1 protein 1766 45.22 0 1931323..1932861 - 512 147673860 - VC0395_A1817 - GGDEF family protein 1767 46.57 0 1933092..1933718 - 208 147675197 upp VC0395_A1818 - uracil phosphoribosyltransferase 1768 50.14 0 1933885..1934925 + 346 147675067 purM VC0395_A1819 - phosphoribosylaminoimidazole synthetase 1769 48.51 0 1934928..1935566 + 212 147674294 purN VC0395_A1820 - phosphoribosylglycinamide formyltransferase 1770 50.12 0 1935707..1936552 - 281 147673553 - VC0395_A1821 - hypothetical protein 1771 45.66 0 1936615..1937190 - 191 147673432 gmhA VC0395_A1822 - phosphoheptose isomerase 1772 50.39 0 1937508..1939952 + 814 147675558 fadE VC0395_A1823 - acyl-CoA dehydrogenase 1773 47.22 0 1940099..1941358 - 419 147674375 - VC0395_A1824 - hypothetical protein 1774 47.58 0 1941367..1942110 - 247 147674786 dnaQ VC0395_A1825 - DNA polymerase III subunit epsilon 1775 52.87 +1 1942167..1942637 + 156 147675243 rnhA VC0395_A1826 - ribonuclease H 1776 45.39 0 1942708..1943445 - 245 147673588 - VC0395_A1827 - hypothetical protein 1777 49.41 0 1943483..1944241 + 252 147673202 - VC0395_A1828 - putative hydroxyacylglutathione hydrolase GloB 1778 49.66 0 1944313..1945911 + 532 147673804 mltD VC0395_A1829 - membrane-bound lytic murein transglycosylase D 1779 47.87 0 1945928..1946773 - 281 147674622 - VC0395_A1830 - hypothetical protein 1780 47.54 0 1946841..1947185 - 114 147675404 glnB-2 VC0395_A1831 - nitrogen regulatory protein P-II 1781 44.76 0 1947339..1947863 - 174 147674939 - VC0395_A1832 - decarboxylase 1782 51.54 0 1948240..1948563 - 107 147675046 - VC0395_A1833 - cytochrome c554 1783 52.38 +1 1948599..1949921 - 440 147674336 tilS VC0395_A1834 - tRNA(Ile)-lysidine synthetase 1784 50.10 0 1950061..1951020 - 319 147674788 accA VC0395_A1835 - acetyl-CoA carboxylase carboxyltransferase subunit alpha 1785 50.70 0 1951075..1954569 - 1164 147675187 dnaE VC0395_A1836 - DNA polymerase III subunit alpha 1786 51.53 0 1954593..1955213 - 206 147673627 rnhB VC0395_A1837 - ribonuclease HII 1787 51.84 +1 1955238..1956377 - 379 147673997 lpxB VC0395_A1838 - lipid-A-disaccharide synthase 1788 49.56 0 1956538..1957326 - 262 147674688 lpxA VC0395_A1839 - UDP-N-acetylglucosamine acyltransferase 1789 44.59 0 1957328..1957789 - 153 147674767 fabZ VC0395_A1840 - (3R)-hydroxymyristoyl-ACP dehydratase 1790 49.24 0 1957865..1958920 - 351 147675586 lpxD VC0395_A1841 - UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 1791 44.71 0 1958930..1959439 - 169 147674756 ompH VC0395_A1842 - outer membrane protein OmpH 1792 47.76 0 1959454..1961865 - 803 147675293 - VC0395_A1843 - outer membrane protein assembly factor YaeT 1793 48.57 0 1961914..1963272 - 452 147673634 - VC0395_A1844 - hypothetical protein 1794 50.79 0 1963269..1964477 - 402 147674244 dxr VC0395_A1845 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1795 48.16 0 1964526..1965368 - 280 147674661 cdsA VC0395_A1846 - phosphatidate cytidylyltransferase 1796 46.17 0 1965386..1966156 - 256 147675134 uppS VC0395_A1847 - undecaprenyl diphosphate synthase 1797 47.31 0 1966230..1966787 - 185 147673161 frr VC0395_A1848 - ribosome recycling factor 1798 49.04 0 1966841..1967572 - 243 147674990 pyrH VC0395_A1849 - uridylate kinase 1799 48.16 0 1967760..1968602 - 280 147675519 tsf VC0395_A1850 - elongation factor Ts 1800 47.33 0 1968734..1969462 - 242 147673418 rpsB VC0395_A1851 - 30S ribosomal protein S2 1801 46.74 0 1969803..1970645 + 280 147674261 map VC0395_A1852 - methionine aminopeptidase 1802 49.28 0 1970735..1973380 + 881 147673286 glnD VC0395_A1853 - PII uridylyl-transferase 1803 39.61 -2 1973626..1974039 + 137 147675190 - VC0395_A1854 - hypothetical protein 1804 49.02 0 1974080..1974589 - 169 147674430 pgpA VC0395_A1855 - phosphatidylglycerophosphatase A 1805 50.45 0 1974586..1975590 - 334 147673943 thiL VC0395_A1856 - thiamine monophosphate kinase 1806 46.92 0 1975651..1976121 - 156 147673228 nusB VC0395_A1857 - transcription antitermination protein NusB 1807 46.55 0 1976121..1976642 - 173 147675653 ribH VC0395_A1858 - riboflavin synthase subunit beta 1808 51.44 0 1976856..1977965 - 369 147674884 ribB/A VC0395_A1859 - 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II 1809 48.78 0 1978006..1978659 - 217 147673055 ribE VC0395_A1860 - riboflavin synthase subunit alpha 1810 51.81 +1 1978664..1979767 - 367 147673692 ribD VC0395_A1861 - riboflavin biosynthesis protein RibD 1811 48.00 0 1979793..1980242 - 149 147674568 nrdR VC0395_A1862 - transcriptional regulator NrdR 1812 51.83 +1 1980342..1981595 - 417 147674854 proA VC0395_A1863 - gamma-glutamyl phosphate reductase 1813 52.29 +1 1981604..1982737 - 377 162329621 proB VC0395_A1864 - gamma-glutamyl kinase 1814 47.69 0 1982858..1983247 - 129 147673803 crl VC0395_A1865 - DNA-binding transcriptional regulator Crl 1815 48.40 0 1983381..1984628 - 415 147675488 frsA VC0395_A1866 - fermentation/respiration switch protein 1816 47.74 0 1984725..1985189 - 154 147675317 gpt VC0395_A1867 - xanthine-guanine phosphoribosyltransferase 1817 49.34 0 1985227..1986519 - 430 147675075 - VC0395_A1868 - hypothetical protein 1818 48.72 0 1987265..1988869 + 534 147674070 pepD VC0395_A1869 - aminoacyl-histidine dipeptidase 1819 46.40 0 1989103..1989546 + 147 147673192 - VC0395_A1870 - hypothetical protein 1820 50.22 0 1989543..1990448 + 301 147675637 rimK VC0395_A1871 - ribosomal protein S6 modification protein 1821 48.85 0 1990408..1991496 + 362 147675459 - VC0395_A1872 - hypothetical protein 1822 48.30 0 1991565..1992920 - 451 147673593 - VC0395_A1873 - sodium-dependent transporter 1823 44.60 0 1993077..1994594 - 505 147675568 - VC0395_A1874 - GGDEF family protein 1824 43.19 -1 1994658..1995428 - 256 147674779 - VC0395_A1875 - hypothetical protein 1825 46.91 0 1995674..1996756 - 360 147674154 dinP VC0395_A1876 - DNA polymerase IV 1826 49.57 0 1996865..1997098 - 77 147673696 - VC0395_A1877 - hypothetical protein 1827 46.01 0 1997115..1998218 - 367 147673710 apbE VC0395_A1878 - thiamin biosynthesis lipoprotein ApbE 1828 46.94 0 1998265..1999491 - 408 147675137 nqrF VC0395_A1879 - Na(+)-translocating NADH-quinone reductase subunit F 1829 46.06 0 1999525..2000121 - 198 147674521 nqrE VC0395_A1880 - Na(+)-translocating NADH-quinone reductase subunit E 1830 45.34 0 2000129..2000761 - 210 147673905 nqrD VC0395_A1881 - Na(+)-translocating NADH-quinone reductase subunit D 1831 47.03 0 2000761..2001534 - 257 147673911 nqrC VC0395_A1882 - Na(+)-translocating NADH-quinone reductase subunit C 1832 49.92 0 2001521..2002768 - 415 147674588 nqrB VC0395_A1883 - Na(+)-translocating NADH-quinone reductase subunit B 1833 48.45 0 2002774..2004162 - 462 147674300 nqrA VC0395_A1884 - Na(+)-translocating NADH-quinone reductase subunit A 1834 47.66 0 2004599..2004919 - 106 147674547 bolA VC0395_A1885 - bolA protein 1835 45.32 0 2004964..2006214 + 416 147675117 - VC0395_A1886 - hypothetical protein 1836 46.22 0 2006211..2006831 + 206 147673359 - VC0395_A1887 - putative lipoprotein 1837 48.55 0 2006788..2007372 + 194 147673347 ppiA VC0395_A1888 - peptidyl-prolyl cis-trans isomerase A 1838 47.88 0 2007441..2008829 + 462 147673933 - VC0395_A1889 - putative ampG protein 1839 48.75 0 2008917..2009597 - 226 147675664 - VC0395_A1890 - putative transcriptional activator 1840 45.98 0 2009594..2010178 - 194 147673682 - VC0395_A1891 - RNA polymerase sigma factor 1841 45.02 0 2010269..2010850 - 193 147675044 - VC0395_A1892 - hypothetical protein 1842 43.43 -1 2011088..2011978 + 296 147674324 ompK VC0395_A1893 - nucleoside-specific channel-forming protein 1843 49.94 0 2012117..2013007 + 296 147675273 panE VC0395_A1894 - 2-dehydropantoate 2-reductase 1844 54.62 +1 2013004..2013609 + 201 147675570 thiJ VC0395_A1895 - 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme 1845 52.35 +1 2013593..2014807 + 404 147673408 - VC0395_A1896 - aminotransferase, class V 1846 51.03 0 2014877..2015311 - 144 147674303 - VC0395_A1897 - hypothetical protein 1847 49.27 0 2015316..2016137 - 273 147675632 - VC0395_A1898 - HesA/MoeB/ThiF family protein 1848 49.86 0 2016229..2017335 - 368 147673142 mltA VC0395_A1899 - murein transglycosylase A 1849 42.96 -1 2017406..2017810 - 134 147673802 - VC0395_A1900 - hypothetical protein 1850 49.45 0 2018048..2019418 + 456 147674698 argA VC0395_A1901 - N-acetylglutamate synthase 1851 44.09 0 2019645..2019830 + 61 147675559 - VC0395_A1902 - hypothetical protein 1852 52.48 +1 2019860..2021980 - 706 147674978 recD VC0395_A1903 - exodeoxyribonuclease V, 67 kDa subunit 1853 54.01 +1 2021977..2025603 - 1208 147674146 recB VC0395_A1904 - exodeoxyribonuclease V, 135 kDa subunit 1854 52.60 +1 2025868..2029314 - 1148 147673707 recC VC0395_A1905 - exonuclease V subunit gamma 1855 53.25 +1 2029535..2030503 - 322 147675376 - VC0395_A1906 - hypothetical protein 1856 50.16 0 2030614..2031528 + 304 147674585 - VC0395_A1907 - LysR family transcriptional regulator 1857 50.81 0 2031644..2031952 + 102 147674235 - VC0395_A1908 - hypothetical protein 1858 53.78 +1 2032262..2033293 + 343 147673636 dapD VC0395_A1909 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 1859 51.65 0 2033375..2034619 - 414 147673068 - VC0395_A1910 - hypothetical protein 1860 49.18 0 2034722..2035813 - 363 147675158 - VC0395_A1911 - acetyltransferase 1861 49.10 0 2036018..2037469 + 483 147674943 - VC0395_A1912 - hypothetical protein 1862 48.17 0 2037659..2038642 + 327 147673395 - VC0395_A1913 - hypothetical protein 1863 49.66 0 2038626..2039213 + 195 147675371 - VC0395_A1915 - hypothetical protein 1864 50.14 0 2039210..2039554 - 114 147674584 - VC0395_A1914 - hypothetical protein 47.83 MEAN 3.88 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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