IslandPathversion 1.0

IslandPath Analysis: Vibrio cholerae O395



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.83 STD DEV: 3.88
Vibrio cholerae O395 chromosome 2, complete sequence - 1..3024069
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1720	 50.32	0	1876730..1877818	-	362	147674456	prfA	VC0395_A1756	-	peptide chain release factor 1
1721	 50.08	0	1877848..1879107	-	419	147674777	hemA	VC0395_A1757	-	glutamyl-tRNA reductase
1722	 46.23	0	1879248..1879883	+	211	147675171	lolB	VC0395_A1758	-	outer membrane lipoprotein LolB
1723	 50.74	0	1879880..1880752	+	290	147673745	-	VC0395_A1759	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
1724	 49.84	0	1880783..1881727	+	314	147673671	prsA	VC0395_A1760	-	ribose-phosphate pyrophosphokinase
1725	 48.22	0	1881896..1882486	+	196	147675550	pth	VC0395_A1761	-	peptidyl-tRNA hydrolase
1726	 48.63	0	1882497..1883588	+	363	147674921	-	VC0395_A1762	-	translation-associated GTPase
1727	 38.81	-2	1885708..1886145	-	145	147673504	tnpA	VC0395_A1777	-	IS1004 transposase
1728	 48.25	0	1886189..1886302	-	37	147673266	-	VC0395_A1778	-	hypothetical protein
1729	 48.41	0	1886309..1887442	-	377	147675419	flaC	VC0395_A1779	-	flagellin
1730	 48.77	0	1887997..1889136	-	379	147674518	flaA	VC0395_A1780	-	flagellin
1731	 41.11	-1	1889285..1889464	-	59	147673159	-	VC0395_A1781	-	hypothetical protein
1732	 47.40	0	1889544..1890737	-	397	147674282	flgL	VC0395_A1782	-	flagellar hook-associated protein FlgL
1733	 47.95	0	1890750..1892624	-	624	147675062	flgK	VC0395_A1783	-	flagellar hook-associated protein FlgK
1734	 48.78	0	1892804..1893742	-	312	147673638	flgJ	VC0395_A1784	-	peptidoglycan hydrolase
1735	 50.46	0	1893753..1894838	-	361	147674065	flgI	VC0395_A1785	-	flagellar basal body P-ring protein
1736	 49.11	0	1894929..1895714	-	261	147674828	flgH	VC0395_A1786	-	flagellar basal body L-ring protein
1737	 48.92	0	1895729..1896517	-	262	147674573	flgG	VC0395_A1787	-	flagellar basal body rod protein FlgG
1738	 51.60	0	1896537..1897286	-	249	147673274	flgF	VC0395_A1788	-	flagellar basal body rod protein FlgF
1739	 47.43	0	1897469..1898773	-	434	147674037	flgE	VC0395_A1789	-	flagellar hook protein FlgE
1740	 48.16	0	1898802..1899509	-	235	147674438	flgD	VC0395_A1790	-	flagellar basal body rod modification protein
1741	 46.28	0	1899527..1899943	-	138	147675208	flgC	VC0395_A1791	-	flagellar basal body rod protein FlgC
1742	 48.99	0	1899948..1900343	-	131	147673875	flgB	VC0395_A1792	-	flagellar basal body rod protein FlgB
1743	 46.62	0	1900563..1901390	-	275	147673113	cheR-2	VC0395_A1793	-	chemotaxis protein methyltransferase CheR
1744	 44.01	0	1901401..1902327	-	308	147674785	cheV-3	VC0395_A1794	-	chemotaxis protein CheV
1745	 45.70	0	1902384..1903151	+	255	147674697	flgA	VC0395_A1795	-	flagellar basal body P-ring biosynthesis protein FlgA
1746	 49.07	0	1903282..1903605	+	107	147673622	flgM	VC0395_A1796	-	negative regulator of flagellin synthesis FlgM
1747	 44.91	0	1903703..1904134	+	143	147675612	-	VC0395_A1797	-	hypothetical protein
1748	 50.23	0	1904244..1904681	-	145	147674431	-	VC0395_A1798	-	putative lipoprotein
1749	 47.98	0	1904689..1905357	-	222	147674348	-	VC0395_A1799	-	putative lipoprotein
1750	 47.62	0	1905485..1906618	+	377	147673377	-	VC0395_A1800	-	hypothetical protein
1751	 49.56	0	1906748..1914001	-	2417	147674802	vibF	VC0395_A1801	-	nonribosomal peptide synthetase VibF
1752	 45.83	0	1914247..1915062	-	271	147675600	viuB	VC0395_A1802	-	vibriobactin utilization protein ViuB
1753	 46.27	0	1915366..1917429	-	687	147675048	viuA	VC0395_A1803	-	ferric vibriobactin receptor
1754	 43.35	-1	1917849..1918547	+	232	147674387	-	VC0395_A1804	-	hypothetical protein
1755	 47.72	0	1918636..1919601	-	321	147673624	ompA	VC0395_A1805	-	outer membrane protein OmpA
1756	 48.50	0	1919897..1921426	-	509	147675108	gltX	VC0395_A1806	-	glutamyl-tRNA synthetase
1757	 51.02	0	1921495..1924242	+	915	147674687	-	VC0395_A1807	-	cation transporter E1-E2 family ATPase
1758	 46.80	0	1924239..1924691	+	150	147673957	-	VC0395_A1808	-	hypothetical protein
1759	 49.55	0	1924828..1927479	-	883	147673355	chb-2	VC0395_A1809	-	beta-N-acetylhexosaminidase
1760	 42.11	-1	1927512..1927625	+	37	147674810	-	VC0395_A1810	-	hypothetical protein
1761	 45.30	0	1927707..1927823	-	38	147674204	-	VC0395_A1811	-	hypothetical protein
1762	 47.27	0	1927896..1928792	+	298	147675759	-	VC0395_A1812	-	hypothetical protein
1763	 43.26	-1	1929273..1929413	+	46	147675489	-	VC0395_A1814	-	hypothetical protein
1764	 49.57	0	1929595..1930173	+	192	147675370	-	VC0395_A1815	-	hypothetical protein
1765	 47.51	0	1930203..1931225	+	340	147674574	-	VC0395_A1816	-	pseudouridine synthase family 1 protein
1766	 45.22	0	1931323..1932861	-	512	147673860	-	VC0395_A1817	-	GGDEF family protein
1767	 46.57	0	1933092..1933718	-	208	147675197	upp	VC0395_A1818	-	uracil phosphoribosyltransferase
1768	 50.14	0	1933885..1934925	+	346	147675067	purM	VC0395_A1819	-	phosphoribosylaminoimidazole synthetase
1769	 48.51	0	1934928..1935566	+	212	147674294	purN	VC0395_A1820	-	phosphoribosylglycinamide formyltransferase
1770	 50.12	0	1935707..1936552	-	281	147673553	-	VC0395_A1821	-	hypothetical protein
1771	 45.66	0	1936615..1937190	-	191	147673432	gmhA	VC0395_A1822	-	phosphoheptose isomerase
1772	 50.39	0	1937508..1939952	+	814	147675558	fadE	VC0395_A1823	-	acyl-CoA dehydrogenase
1773	 47.22	0	1940099..1941358	-	419	147674375	-	VC0395_A1824	-	hypothetical protein
1774	 47.58	0	1941367..1942110	-	247	147674786	dnaQ	VC0395_A1825	-	DNA polymerase III subunit epsilon
1775	 52.87	+1	1942167..1942637	+	156	147675243	rnhA	VC0395_A1826	-	ribonuclease H
1776	 45.39	0	1942708..1943445	-	245	147673588	-	VC0395_A1827	-	hypothetical protein
1777	 49.41	0	1943483..1944241	+	252	147673202	-	VC0395_A1828	-	putative hydroxyacylglutathione hydrolase GloB
1778	 49.66	0	1944313..1945911	+	532	147673804	mltD	VC0395_A1829	-	membrane-bound lytic murein transglycosylase D
1779	 47.87	0	1945928..1946773	-	281	147674622	-	VC0395_A1830	-	hypothetical protein
1780	 47.54	0	1946841..1947185	-	114	147675404	glnB-2	VC0395_A1831	-	nitrogen regulatory protein P-II
1781	 44.76	0	1947339..1947863	-	174	147674939	-	VC0395_A1832	-	decarboxylase
1782	 51.54	0	1948240..1948563	-	107	147675046	-	VC0395_A1833	-	cytochrome c554
1783	 52.38	+1	1948599..1949921	-	440	147674336	tilS	VC0395_A1834	-	tRNA(Ile)-lysidine synthetase
1784	 50.10	0	1950061..1951020	-	319	147674788	accA	VC0395_A1835	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
1785	 50.70	0	1951075..1954569	-	1164	147675187	dnaE	VC0395_A1836	-	DNA polymerase III subunit alpha
1786	 51.53	0	1954593..1955213	-	206	147673627	rnhB	VC0395_A1837	-	ribonuclease HII
1787	 51.84	+1	1955238..1956377	-	379	147673997	lpxB	VC0395_A1838	-	lipid-A-disaccharide synthase
1788	 49.56	0	1956538..1957326	-	262	147674688	lpxA	VC0395_A1839	-	UDP-N-acetylglucosamine acyltransferase
1789	 44.59	0	1957328..1957789	-	153	147674767	fabZ	VC0395_A1840	-	(3R)-hydroxymyristoyl-ACP dehydratase
1790	 49.24	0	1957865..1958920	-	351	147675586	lpxD	VC0395_A1841	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
1791	 44.71	0	1958930..1959439	-	169	147674756	ompH	VC0395_A1842	-	outer membrane protein OmpH
1792	 47.76	0	1959454..1961865	-	803	147675293	-	VC0395_A1843	-	outer membrane protein assembly factor YaeT
1793	 48.57	0	1961914..1963272	-	452	147673634	-	VC0395_A1844	-	hypothetical protein
1794	 50.79	0	1963269..1964477	-	402	147674244	dxr	VC0395_A1845	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
1795	 48.16	0	1964526..1965368	-	280	147674661	cdsA	VC0395_A1846	-	phosphatidate cytidylyltransferase
1796	 46.17	0	1965386..1966156	-	256	147675134	uppS	VC0395_A1847	-	undecaprenyl diphosphate synthase
1797	 47.31	0	1966230..1966787	-	185	147673161	frr	VC0395_A1848	-	ribosome recycling factor
1798	 49.04	0	1966841..1967572	-	243	147674990	pyrH	VC0395_A1849	-	uridylate kinase
1799	 48.16	0	1967760..1968602	-	280	147675519	tsf	VC0395_A1850	-	elongation factor Ts
1800	 47.33	0	1968734..1969462	-	242	147673418	rpsB	VC0395_A1851	-	30S ribosomal protein S2
1801	 46.74	0	1969803..1970645	+	280	147674261	map	VC0395_A1852	-	methionine aminopeptidase
1802	 49.28	0	1970735..1973380	+	881	147673286	glnD	VC0395_A1853	-	PII uridylyl-transferase
1803	 39.61	-2	1973626..1974039	+	137	147675190	-	VC0395_A1854	-	hypothetical protein
1804	 49.02	0	1974080..1974589	-	169	147674430	pgpA	VC0395_A1855	-	phosphatidylglycerophosphatase A
1805	 50.45	0	1974586..1975590	-	334	147673943	thiL	VC0395_A1856	-	thiamine monophosphate kinase
1806	 46.92	0	1975651..1976121	-	156	147673228	nusB	VC0395_A1857	-	transcription antitermination protein NusB
1807	 46.55	0	1976121..1976642	-	173	147675653	ribH	VC0395_A1858	-	riboflavin synthase subunit beta
1808	 51.44	0	1976856..1977965	-	369	147674884	ribB/A	VC0395_A1859	-	3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II
1809	 48.78	0	1978006..1978659	-	217	147673055	ribE	VC0395_A1860	-	riboflavin synthase subunit alpha
1810	 51.81	+1	1978664..1979767	-	367	147673692	ribD	VC0395_A1861	-	riboflavin biosynthesis protein RibD
1811	 48.00	0	1979793..1980242	-	149	147674568	nrdR	VC0395_A1862	-	transcriptional regulator NrdR
1812	 51.83	+1	1980342..1981595	-	417	147674854	proA	VC0395_A1863	-	gamma-glutamyl phosphate reductase
1813	 52.29	+1	1981604..1982737	-	377	162329621	proB	VC0395_A1864	-	gamma-glutamyl kinase
1814	 47.69	0	1982858..1983247	-	129	147673803	crl	VC0395_A1865	-	DNA-binding transcriptional regulator Crl
1815	 48.40	0	1983381..1984628	-	415	147675488	frsA	VC0395_A1866	-	fermentation/respiration switch protein
1816	 47.74	0	1984725..1985189	-	154	147675317	gpt	VC0395_A1867	-	xanthine-guanine phosphoribosyltransferase
1817	 49.34	0	1985227..1986519	-	430	147675075	-	VC0395_A1868	-	hypothetical protein
1818	 48.72	0	1987265..1988869	+	534	147674070	pepD	VC0395_A1869	-	aminoacyl-histidine dipeptidase
1819	 46.40	0	1989103..1989546	+	147	147673192	-	VC0395_A1870	-	hypothetical protein
47.83	MEAN

3.88	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.