version 1.0
Vibrio cholerae O395 chromosome 2, complete sequence - 1..3024069 2742 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1683 50.28 0 1841800..1843239 - 479 147673544 flrC VC0395_A1719 - flagellar regulatory protein C 1684 50.85 0 1843236..1844291 - 351 147675650 flrB VC0395_A1720 - flagellar regulatory protein B 1685 49.90 0 1844403..1845869 - 488 147675013 flrA VC0395_A1721 - flagellar regulatory protein A 1686 46.23 0 1846101..1846511 - 136 147673727 fliS VC0395_A1722 - flagellar protein FliS 1687 41.90 -1 1846522..1846836 - 104 147673154 - VC0395_A1723 - putative flagellar rod protein FlaI 1688 51.52 0 1846829..1848829 - 666 147675440 fliD VC0395_A1724 - flagellar capping protein 1689 48.27 0 1848851..1849312 - 153 147675482 flaG VC0395_A1725 - flagellar protein FlaG 1690 50.40 0 1849386..1850516 - 376 147674837 flaB VC0395_A1726 - flagellin 1691 48.68 0 1850752..1851885 - 377 147675484 flaD VC0395_A1727 - flagellin 1692 49.52 0 1852175..1853311 - 378 147675318 flaE VC0395_A1728 - flagellin 1693 48.95 0 1853435..1854343 - 302 147674932 - VC0395_A1729 - tyrA protein 1694 48.39 0 1854409..1854873 - 154 147673816 - VC0395_A1730 - hypothetical protein 1695 45.10 0 1855017..1855373 + 118 147673419 - VC0395_A1731 - hypothetical protein 1696 49.31 0 1855440..1855727 - 95 147675761 - VC0395_A1732 - hypothetical protein 1697 45.45 0 1855930..1856325 + 131 147673991 - VC0395_A1733 - hypothetical protein 1698 51.68 0 1856356..1857489 + 377 147674209 dapE VC0395_A1734 - succinyl-diaminopimelate desuccinylase 1699 49.04 0 1857492..1858166 + 224 147675325 - VC0395_A1735 - VanY family protein 1700 46.22 0 1858156..1858380 + 74 147674432 - VC0395_A1736 - hypothetical protein 1701 49.31 0 1858473..1859492 - 339 147674077 nlpB VC0395_A1737 - lipoprotein 1702 48.92 0 1859550..1860428 - 292 147673601 dapA VC0395_A1738 - dihydrodipicolinate synthase 1703 45.86 0 1860706..1861248 + 180 147675107 - VC0395_A1739 - putative glycine cleavage system transcriptional repressor 1704 45.94 0 1861263..1861730 + 155 147674356 bcp VC0395_A1740 - thioredoxin-dependent thiol peroxidase 1705 48.45 0 1861832..1863703 - 623 147673902 - VC0395_A1741 - methyl-accepting chemotaxis protein 1706 47.70 0 1863894..1864958 - 354 147673150 - VC0395_A1742 - putative permease PerM 1707 48.52 0 1864951..1865187 - 78 147675026 - VC0395_A1743 - hypothetical protein 1708 50.03 0 1865371..1866825 + 484 147674253 - VC0395_A1744 - hypothetical protein 1709 47.58 0 1866848..1867198 + 116 147673287 arsC VC0395_A1745 - arsenate reductase 1710 51.87 +1 1867195..1867755 + 186 147675625 wrbA VC0395_A1746 - Trp repressor-binding protein 1711 48.86 0 1867758..1868195 + 145 147674419 - VC0395_A1747 - hypothetical protein 1712 49.96 0 1868402..1869550 - 382 147673837 - VC0395_A1748 - hypothetical protein 1713 52.23 +1 1869771..1871024 + 417 147674252 uraA VC0395_A1749 - uracil permease 1714 47.20 0 1871095..1871577 - 160 147675041 - VC0395_A1750 - hypothetical protein 1715 48.26 0 1871711..1873372 - 553 147673600 ushA VC0395_A1751 - bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor 1716 50.00 0 1873784..1874635 - 283 147674359 kdsA VC0395_A1752 - 2-dehydro-3-deoxyphosphooctonate aldolase 1717 47.60 0 1874655..1875467 - 270 147674484 - VC0395_A1753 - hypothetical protein 1718 45.83 0 1875483..1875866 - 127 147675215 - VC0395_A1754 - hypothetical protein 1719 52.03 +1 1875866..1876726 - 286 147674049 hemK VC0395_A1755 - hemK protein 1720 50.32 0 1876730..1877818 - 362 147674456 prfA VC0395_A1756 - peptide chain release factor 1 1721 50.08 0 1877848..1879107 - 419 147674777 hemA VC0395_A1757 - glutamyl-tRNA reductase 1722 46.23 0 1879248..1879883 + 211 147675171 lolB VC0395_A1758 - outer membrane lipoprotein LolB 1723 50.74 0 1879880..1880752 + 290 147673745 - VC0395_A1759 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1724 49.84 0 1880783..1881727 + 314 147673671 prsA VC0395_A1760 - ribose-phosphate pyrophosphokinase 1725 48.22 0 1881896..1882486 + 196 147675550 pth VC0395_A1761 - peptidyl-tRNA hydrolase 1726 48.63 0 1882497..1883588 + 363 147674921 - VC0395_A1762 - translation-associated GTPase 1727 38.81 -2 1885708..1886145 - 145 147673504 tnpA VC0395_A1777 - IS1004 transposase 1728 48.25 0 1886189..1886302 - 37 147673266 - VC0395_A1778 - hypothetical protein 1729 48.41 0 1886309..1887442 - 377 147675419 flaC VC0395_A1779 - flagellin 1730 48.77 0 1887997..1889136 - 379 147674518 flaA VC0395_A1780 - flagellin 1731 41.11 -1 1889285..1889464 - 59 147673159 - VC0395_A1781 - hypothetical protein 1732 47.40 0 1889544..1890737 - 397 147674282 flgL VC0395_A1782 - flagellar hook-associated protein FlgL 1733 47.95 0 1890750..1892624 - 624 147675062 flgK VC0395_A1783 - flagellar hook-associated protein FlgK 1734 48.78 0 1892804..1893742 - 312 147673638 flgJ VC0395_A1784 - peptidoglycan hydrolase 1735 50.46 0 1893753..1894838 - 361 147674065 flgI VC0395_A1785 - flagellar basal body P-ring protein 1736 49.11 0 1894929..1895714 - 261 147674828 flgH VC0395_A1786 - flagellar basal body L-ring protein 1737 48.92 0 1895729..1896517 - 262 147674573 flgG VC0395_A1787 - flagellar basal body rod protein FlgG 1738 51.60 0 1896537..1897286 - 249 147673274 flgF VC0395_A1788 - flagellar basal body rod protein FlgF 1739 47.43 0 1897469..1898773 - 434 147674037 flgE VC0395_A1789 - flagellar hook protein FlgE 1740 48.16 0 1898802..1899509 - 235 147674438 flgD VC0395_A1790 - flagellar basal body rod modification protein 1741 46.28 0 1899527..1899943 - 138 147675208 flgC VC0395_A1791 - flagellar basal body rod protein FlgC 1742 48.99 0 1899948..1900343 - 131 147673875 flgB VC0395_A1792 - flagellar basal body rod protein FlgB 1743 46.62 0 1900563..1901390 - 275 147673113 cheR-2 VC0395_A1793 - chemotaxis protein methyltransferase CheR 1744 44.01 0 1901401..1902327 - 308 147674785 cheV-3 VC0395_A1794 - chemotaxis protein CheV 1745 45.70 0 1902384..1903151 + 255 147674697 flgA VC0395_A1795 - flagellar basal body P-ring biosynthesis protein FlgA 1746 49.07 0 1903282..1903605 + 107 147673622 flgM VC0395_A1796 - negative regulator of flagellin synthesis FlgM 1747 44.91 0 1903703..1904134 + 143 147675612 - VC0395_A1797 - hypothetical protein 1748 50.23 0 1904244..1904681 - 145 147674431 - VC0395_A1798 - putative lipoprotein 1749 47.98 0 1904689..1905357 - 222 147674348 - VC0395_A1799 - putative lipoprotein 1750 47.62 0 1905485..1906618 + 377 147673377 - VC0395_A1800 - hypothetical protein 1751 49.56 0 1906748..1914001 - 2417 147674802 vibF VC0395_A1801 - nonribosomal peptide synthetase VibF 1752 45.83 0 1914247..1915062 - 271 147675600 viuB VC0395_A1802 - vibriobactin utilization protein ViuB 1753 46.27 0 1915366..1917429 - 687 147675048 viuA VC0395_A1803 - ferric vibriobactin receptor 1754 43.35 -1 1917849..1918547 + 232 147674387 - VC0395_A1804 - hypothetical protein 1755 47.72 0 1918636..1919601 - 321 147673624 ompA VC0395_A1805 - outer membrane protein OmpA 1756 48.50 0 1919897..1921426 - 509 147675108 gltX VC0395_A1806 - glutamyl-tRNA synthetase 1757 51.02 0 1921495..1924242 + 915 147674687 - VC0395_A1807 - cation transporter E1-E2 family ATPase 1758 46.80 0 1924239..1924691 + 150 147673957 - VC0395_A1808 - hypothetical protein 1759 49.55 0 1924828..1927479 - 883 147673355 chb-2 VC0395_A1809 - beta-N-acetylhexosaminidase 1760 42.11 -1 1927512..1927625 + 37 147674810 - VC0395_A1810 - hypothetical protein 1761 45.30 0 1927707..1927823 - 38 147674204 - VC0395_A1811 - hypothetical protein 1762 47.27 0 1927896..1928792 + 298 147675759 - VC0395_A1812 - hypothetical protein 1763 43.26 -1 1929273..1929413 + 46 147675489 - VC0395_A1814 - hypothetical protein 1764 49.57 0 1929595..1930173 + 192 147675370 - VC0395_A1815 - hypothetical protein 1765 47.51 0 1930203..1931225 + 340 147674574 - VC0395_A1816 - pseudouridine synthase family 1 protein 1766 45.22 0 1931323..1932861 - 512 147673860 - VC0395_A1817 - GGDEF family protein 1767 46.57 0 1933092..1933718 - 208 147675197 upp VC0395_A1818 - uracil phosphoribosyltransferase 1768 50.14 0 1933885..1934925 + 346 147675067 purM VC0395_A1819 - phosphoribosylaminoimidazole synthetase 1769 48.51 0 1934928..1935566 + 212 147674294 purN VC0395_A1820 - phosphoribosylglycinamide formyltransferase 1770 50.12 0 1935707..1936552 - 281 147673553 - VC0395_A1821 - hypothetical protein 1771 45.66 0 1936615..1937190 - 191 147673432 gmhA VC0395_A1822 - phosphoheptose isomerase 1772 50.39 0 1937508..1939952 + 814 147675558 fadE VC0395_A1823 - acyl-CoA dehydrogenase 1773 47.22 0 1940099..1941358 - 419 147674375 - VC0395_A1824 - hypothetical protein 1774 47.58 0 1941367..1942110 - 247 147674786 dnaQ VC0395_A1825 - DNA polymerase III subunit epsilon 1775 52.87 +1 1942167..1942637 + 156 147675243 rnhA VC0395_A1826 - ribonuclease H 1776 45.39 0 1942708..1943445 - 245 147673588 - VC0395_A1827 - hypothetical protein 1777 49.41 0 1943483..1944241 + 252 147673202 - VC0395_A1828 - putative hydroxyacylglutathione hydrolase GloB 1778 49.66 0 1944313..1945911 + 532 147673804 mltD VC0395_A1829 - membrane-bound lytic murein transglycosylase D 1779 47.87 0 1945928..1946773 - 281 147674622 - VC0395_A1830 - hypothetical protein 1780 47.54 0 1946841..1947185 - 114 147675404 glnB-2 VC0395_A1831 - nitrogen regulatory protein P-II 1781 44.76 0 1947339..1947863 - 174 147674939 - VC0395_A1832 - decarboxylase 1782 51.54 0 1948240..1948563 - 107 147675046 - VC0395_A1833 - cytochrome c554 47.83 MEAN 3.88 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.