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Vibrio cholerae O395 chromosome 2, complete sequence - 1..3024069 2742 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1571 50.12 0 1725867..1727111 - 414 147673369 fabF VC0395_A1605 - 3-oxoacyl-(acyl carrier protein) synthase II 1572 42.64 -1 1727200..1727532 - 110 147673387 acpP VC0395_A1606 - acyl carrier protein 1573 50.47 0 1727672..1728418 - 248 147675453 fabG VC0395_A1607 - 3-ketoacyl-(acyl-carrier-protein) reductase 1574 48.99 0 1728434..1729372 - 312 147673966 fabD VC0395_A1608 - malonyl CoA-acyl carrier protein transacylase 1575 49.53 0 1729427..1730377 - 316 147673193 fabH-1 VC0395_A1609 - 3-oxoacyl-(acyl carrier protein) synthase III 1576 48.34 0 1730383..1731408 - 341 147675180 plsX VC0395_A1610 - putative glycerol-3-phosphate acyltransferase PlsX 1577 48.54 0 1731418..1731588 - 56 147674886 rpmF VC0395_A1611 - 50S ribosomal protein L32 1578 41.90 -1 1731623..1732147 - 174 147675692 - VC0395_A1612 - hypothetical protein 1579 45.02 0 1732295..1732876 + 193 147673643 - VC0395_A1613 - Maf-like protein 1580 48.95 0 1732977..1733924 - 315 147673109 rluC VC0395_A1614 - ribosomal large subunit pseudouridine synthase C 1581 48.48 0 1734545..1736611 + 688 147674453 - VC0395_A1615 - ribonuclease E 1582 53.25 +1 1736986..1737693 + 235 147673238 rne VC0395_A1616 - ribonuclease E 1583 49.30 0 1738041..1739606 + 521 147673538 - VC0395_A1617 - sulfate permease family protein 1584 50.23 0 1739724..1740599 + 291 147674001 - VC0395_A1618 - hypothetical protein 1585 48.72 0 1740709..1743393 - 894 147675521 adhE VC0395_A1619 - bifunctional acetaldehyde-CoA/alcohol dehydrogenase 1586 48.51 0 1744020..1744658 + 212 147673533 - VC0395_A1620 - hypothetical protein 1587 49.69 0 1744748..1745860 - 370 147673189 asd VC0395_A1621 - aspartate-semialdehyde dehydrogenase 1588 47.51 0 1746285..1747730 + 481 147675315 yqkI VC0395_A1622 - Na+/H+ antiporter 1589 46.77 0 1747765..1748970 - 401 147675464 - VC0395_A1623 - hypothetical protein 1590 44.61 0 1749133..1750134 - 333 147674919 - VC0395_A1624 - nucleoid-associated protein NdpA 1591 40.74 -1 1750219..1750434 + 71 147673537 - VC0395_A1625 - hypothetical protein 1592 45.76 0 1750469..1752271 + 600 147674285 - VC0395_A1626 - hypothetical protein 1593 49.73 0 1752729..1753649 - 306 147674598 - VC0395_A1629 - histone deacetylase/AcuC/AphA family protein 1594 49.13 0 1753670..1755613 - 647 147675446 topB VC0395_A1630 - DNA topoisomerase III 1595 48.05 0 1755698..1756030 - 110 147673099 - VC0395_A1631 - hypothetical protein 1596 47.35 0 1756282..1756866 + 194 147673867 sodB VC0395_A1632 - superoxide dismutase, Fe 1597 48.98 0 1756948..1757484 + 178 147674967 - VC0395_A1633 - hypothetical protein 1598 38.76 -2 1757825..1757953 - 42 147675696 - VC0395_A1634 - hypothetical protein 1599 46.70 0 1757853..1758533 + 226 147674021 - VC0395_A1635 - short chain dehydrogenase 1600 47.32 0 1758546..1759310 - 254 147674073 vacJ VC0395_A1636 - vacJ lipoprotein 1601 47.16 0 1759363..1760577 - 404 147675723 ccmH VC0395_A1637 - cytochrome c-type biogenesis protein CcmH 1602 46.33 0 1760580..1761056 - 158 147675051 - VC0395_A1638 - cytochrome c-type biogenesis protein CcmH 1603 45.05 0 1761053..1761607 - 184 147675010 dsbE VC0395_A1639 - thiol:disulfide interchange protein DsbE 1604 49.85 0 1761608..1763563 - 651 147674378 ccmF VC0395_A1640 - cytochrome c-type biogenesis protein CcmF 1605 47.83 0 1763560..1764042 - 160 147673770 ccmE VC0395_A1641 - cytochrome c-type biogenesis protein CcmE 1606 46.38 0 1764039..1764245 - 68 147673210 ccmD VC0395_A1642 - heme exporter protein D 1607 50.46 0 1764245..1764997 - 250 147674659 ccmC VC0395_A1643 - heme exporter protein C 1608 49.48 0 1765088..1765756 - 222 147673754 ccmB VC0395_A1644 - heme exporter protein B 1609 47.28 0 1765753..1766376 - 207 147673545 ccmA VC0395_A1645 - cytochrome c biogenesis protein CcmA 1610 47.42 0 1766750..1767253 - 167 147675281 - VC0395_A1646 - hypothetical protein 1611 45.90 0 1767229..1767753 - 174 147674307 cheW-1 VC0395_A1647 - purine-binding chemotaxis protein CheW 1612 46.80 0 1767762..1768778 - 338 147674008 - VC0395_A1648 - hypothetical protein 1613 46.20 0 1768771..1769547 - 258 147675595 - VC0395_A1649 - ParA family protein 1614 48.85 0 1769557..1770690 - 377 147674819 cheB-2 VC0395_A1650 - chemotaxis-specific methylesterase 1615 48.85 0 1770717..1773074 - 785 147674329 cheA-2 VC0395_A1651 - chemotaxis protein CheA 1616 45.28 0 1773084..1773803 - 239 147673688 cheZ VC0395_A1652 - chemotaxis protein CheZ 1617 42.24 -1 1773859..1774251 - 130 147675594 cheY-3 VC0395_A1653 - chemotaxis protein CheY 1618 45.44 0 1774273..1775007 - 244 147674794 fliA VC0395_A1654 - flagellar biosynthesis sigma factor 1619 47.77 0 1775000..1775941 - 313 147674338 - VC0395_A1655 - ParA family protein 1620 50.27 0 1775901..1777388 - 495 147673602 flhF VC0395_A1656 - flagellar biosynthesis regulator FlhF 1621 49.95 0 1777423..1779516 - 697 147675206 flhA VC0395_A1657 - flagellar biosynthesis protein FlhA 1622 49.37 0 1779848..1780321 - 157 147674345 sixA VC0395_A1658 - phosphohistidine phosphatase 1623 47.59 0 1780465..1783284 + 939 147675351 - VC0395_A1660 - peptidase insulinase family protein 1624 49.41 0 1783281..1783877 - 198 147673572 - VC0395_A1659 - hypothetical protein 1625 48.61 0 1784011..1785810 + 599 147673730 argS VC0395_A1661 - arginyl-tRNA synthetase 1626 49.32 0 1785901..1786344 + 147 147673143 - VC0395_A1662 - histidine triad family protein 1627 48.48 0 1786606..1786836 - 76 147673946 - VC0395_A1663 - hypothetical protein 1628 46.90 0 1786833..1789109 - 758 147673265 feoB VC0395_A1664 - ferrous iron transport protein B 1629 48.05 0 1789106..1789336 - 76 147675518 feoA VC0395_A1665 - ferrous iron transport protein A 1630 44.15 0 1790108..1793473 - 1121 147674890 - VC0395_A1666 - AraC/XylS family transcriptional regulator 1631 46.98 0 1793655..1794548 - 297 147674268 znuA VC0395_A1667 - zinc ABC transporter, periplasmic zinc-binding protein 1632 46.26 0 1794623..1795411 + 262 147675307 znuC VC0395_A1668 - zinc ABC transporter, ATP-binding protein 1633 49.81 0 1795404..1796186 + 260 147675495 znuB VC0395_A1669 - zinc ABC transporter, permease protein 1634 48.45 0 1796293..1797165 - 290 147673983 sucD VC0395_A1670 - succinyl-CoA synthetase subunit alpha 1635 47.47 0 1797165..1798331 - 388 147673132 sucC VC0395_A1671 - succinyl-CoA synthetase subunit beta 1636 49.22 0 1798499..1799713 - 404 147675118 sucB VC0395_A1672 - dihydrolipoamide acetyltransferase 1637 50.23 0 1799742..1802552 - 936 147675042 kgd VC0395_A1673 - alpha-ketoglutarate decarboxylase 1638 44.30 0 1802641..1803351 - 236 147674178 sdhB VC0395_A1674 - succinate dehydrogenase iron-sulfur subunit 1639 49.41 0 1803366..1805132 - 588 147673431 sdhA VC0395_A1675 - succinate dehydrogenase flavoprotein subunit 1640 43.48 -1 1805133..1805477 - 114 147674183 sdhD VC0395_A1676 - succinate dehydrogenase, hydrophobic membrane anchor protein 1641 48.09 0 1805471..1805863 - 130 147673409 sdhC VC0395_A1677 - succinate dehydrogenase cytochrome b556 large membrane subunit 1642 46.76 0 1806253..1807548 + 431 147673936 gltA VC0395_A1678 - type II citrate synthase 1643 45.65 0 1807600..1808370 - 256 147674477 - VC0395_A1679 - hypothetical protein 1644 44.06 0 1808423..1809196 + 257 147673486 - VC0395_A1680 - hypothetical protein 1645 48.94 0 1809246..1810892 - 548 147674240 pgm VC0395_A1681 - phosphoglucomutase 1646 46.63 0 1811001..1811534 - 177 147674637 seqA VC0395_A1682 - replication initiation regulator SeqA 1647 47.67 0 1811627..1812400 + 257 147675456 - VC0395_A1683 - hydrolase 1648 45.50 0 1812496..1812717 + 73 147674606 - VC0395_A1684 - hypothetical protein 1649 46.40 0 1812766..1813293 + 175 147675417 fldA VC0395_A1685 - flavodoxin FldA 1650 50.29 0 1813367..1814056 - 229 147673045 - VC0395_A1686 - hypothetical protein 1651 48.30 0 1814062..1814502 - 146 147673796 - VC0395_A1687 - hypothetical protein 1652 50.51 0 1814618..1815496 + 292 147673570 - VC0395_A1688 - LysR family transcriptional regulator 1653 47.11 0 1815500..1816000 - 166 147673832 - VC0395_A1689 - hypothetical protein 1654 43.71 -1 1816366..1816818 + 150 147674743 fur VC0395_A1690 - ferric uptake regulator 1655 48.87 0 1816900..1817916 - 338 147675308 - VC0395_A1691 - aspartate-semialdehyde dehydrogenase 1656 49.91 0 1817897..1819060 - 387 147673968 pdxB VC0395_A1692 - erythronate-4-phosphate dehydrogenase 1657 49.92 0 1819246..1820457 - 403 147674185 fabB VC0395_A1693 - 3-oxoacyl-(acyl-carrier-protein) synthase I 1658 51.65 0 1820575..1822599 + 674 147674806 mnmC VC0395_A1694 - 5-methylaminomethyl-2-thiouridine methyltransferase 1659 50.00 0 1822677..1823204 - 175 147675722 - VC0395_A1695 - hypothetical protein 1660 51.89 +1 1823412..1823675 - 87 147675483 - VC0395_A1696 - hypothetical protein 1661 47.46 0 1823714..1824244 - 176 147673720 - VC0395_A1697 - hypothetical protein 1662 52.24 +1 1824608..1825231 + 207 147673621 - VC0395_A1698 - hypothetical protein 1663 51.01 0 1825313..1826398 - 361 147675123 aroC VC0395_A1699 - chorismate synthase 1664 49.31 0 1826628..1827572 - 314 147673603 - VC0395_A1700 - N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 1665 50.09 0 1827627..1828187 + 186 147673917 - VC0395_A1701 - hypothetical protein 1666 50.49 0 1828195..1829325 - 376 147674451 flhB VC0395_A1702 - flagellar biosynthesis protein FlhB 1667 49.81 0 1829335..1830117 - 260 147673452 fliR VC0395_A1703 - flagellar biosynthesis protein FliR 1668 45.19 0 1830126..1830395 - 89 147674176 fliQ VC0395_A1704 - flagellar biosynthesis protein FliQ 1669 48.00 0 1830408..1831307 - 299 147674933 fliP VC0395_A1705 - flagellar biosynthesis protein FliP 1670 46.34 0 1831174..1831296 + 40 147674950 - VC0395_A1707 - hypothetical protein 47.83 MEAN 3.88 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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