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Vibrio cholerae O395 chromosome 2, complete sequence - 1..3024069 2742 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1526 50.76 0 1678331..1679122 - 263 147674495 - VC0395_A1560 - acyl-CoA thioester hydrolase YfbB 1527 53.36 +1 1679112..1680824 - 570 147675176 menD VC0395_A1561 - 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase 1528 52.75 +1 1680821..1682128 - 435 147673372 menF VC0395_A1562 - menaquinone-specific isochorismate synthase 1529 49.88 0 1682343..1683557 + 404 147673982 - VC0395_A1563 - aminotransferase AlaT 1530 49.29 0 1683593..1684294 + 233 147675646 - VC0395_A1564 - hypothetical protein 1531 52.34 +1 1684351..1685676 + 441 147673736 dgt VC0395_A1566 - deoxyguanosinetriphosphate triphosphohydrolase-like protein 1532 51.58 0 1685670..1686272 - 200 147673475 - VC0395_A1565 - hypothetical protein 1533 52.72 +1 1686276..1686827 + 183 147673155 - VC0395_A1567 - hypothetical protein 1534 48.54 0 1686903..1688750 - 615 147674907 - VC0395_A1568 - putative peptidase 1535 50.09 0 1688963..1690108 - 381 147675516 rnd VC0395_A1569 - ribonuclease D 1536 50.56 0 1690194..1691894 - 566 147673701 fadD VC0395_A1570 - long-chain-fatty-acid--CoA ligase 1537 52.16 +1 1692019..1692873 - 284 147674280 - VC0395_A1571 - hypothetical protein 1538 50.57 0 1692870..1693478 - 202 147674501 - VC0395_A1572 - putative outer membrane lipoprotein Slp 1539 52.29 +1 1693444..1693749 - 101 147675166 - VC0395_A1573 - hypothetical protein 1540 53.64 +1 1693809..1694522 - 237 147673304 - VC0395_A1574 - hypothetical protein 1541 51.83 +1 1694519..1696459 - 646 147673986 - VC0395_A1575 - putative ATP-dependent helicase 1542 51.11 0 1696551..1696685 - 44 147675229 - VC0395_A1576 - hypothetical protein 1543 46.28 0 1697024..1697857 + 277 147673084 purU VC0395_A1577 - formyltetrahydrofolate deformylase 1544 51.44 0 1697931..1699985 - 684 147675393 fadH VC0395_A1578 - 2,4-dienoyl-CoA reductase 1545 48.84 0 1700161..1702011 + 616 147673256 sppA VC0395_A1579 - protease IV 1546 49.51 0 1702128..1703141 + 337 147674874 ansA VC0395_A1580 - cytoplasmic asparaginase I 1547 48.26 0 1703239..1703526 - 95 147675465 - VC0395_A1581 - hypothetical protein 1548 45.58 0 1703630..1704454 + 274 147674256 - VC0395_A1583 - putative lipoprotein 1549 50.39 0 1703675..1703803 - 42 147673659 - VC0395_A1582 - hypothetical protein 1550 44.37 0 1704615..1705058 - 147 147674517 - VC0395_A1584 - methionine sulfoxide reductase B 1551 36.05 -2 1705064..1705210 + 48 147675150 - VC0395_A1585 - hypothetical protein 1552 47.09 0 1705358..1706353 + 331 147675025 gapA-1 VC0395_A1586 - glyceraldehyde 3-phosphate dehydrogenase 1553 49.38 0 1706501..1707391 + 296 147673288 - VC0395_A1587 - hypothetical protein 1554 48.86 0 1707825..1708829 + 334 147673478 - VC0395_A1588 - hypothetical protein 1555 48.03 0 1708966..1709802 + 278 147674072 rrmA VC0395_A1589 - 23S rRNA methyltransferase A 1556 48.36 0 1709823..1710800 + 325 147675034 - VC0395_A1590 - hypothetical protein 1557 47.62 0 1710940..1711296 + 118 147675660 - VC0395_A1591 - hypothetical protein 1558 43.17 -1 1711370..1712314 - 314 147674465 cheV-2 VC0395_A1592 - chemotaxis protein CheV 1559 46.06 0 1712419..1713636 - 405 147675300 - VC0395_A1593 - ROK family transcriptional regulator 1560 48.76 0 1714081..1715526 + 481 147673494 pykA-1 VC0395_A1594 - pyruvate kinase II 1561 46.92 0 1715568..1716737 - 389 147674127 - VC0395_A1595 - hypothetical protein 1562 40.48 -1 1716744..1716869 - 41 147675350 - VC0395_A1596 - hypothetical protein 1563 45.18 0 1716969..1717559 + 196 147674007 - VC0395_A1597 - hypothetical protein 1564 45.77 0 1717943..1719526 + 527 147673239 - VC0395_A1598 - sodium-dependent transporter 1565 47.77 0 1719739..1721241 - 500 147675620 ptsG VC0395_A1599 - glucose-specific PTS system IIBC components 1566 45.57 0 1721613..1722380 - 255 147674791 - VC0395_A1600 - hypothetical protein 1567 47.90 0 1722371..1723345 - 324 147674380 holB VC0395_A1601 - DNA polymerase III subunit delta' 1568 48.36 0 1723338..1723976 - 212 147673617 tdk VC0395_A1602 - thymidylate kinase 1569 46.41 0 1723973..1724989 - 338 147674599 - VC0395_A1603 - hypothetical protein 1570 47.60 0 1724986..1725819 - 277 147673849 pabC VC0395_A1604 - 4-amino-4-deoxychorismate lyase 1571 50.12 0 1725867..1727111 - 414 147673369 fabF VC0395_A1605 - 3-oxoacyl-(acyl carrier protein) synthase II 1572 42.64 -1 1727200..1727532 - 110 147673387 acpP VC0395_A1606 - acyl carrier protein 1573 50.47 0 1727672..1728418 - 248 147675453 fabG VC0395_A1607 - 3-ketoacyl-(acyl-carrier-protein) reductase 1574 48.99 0 1728434..1729372 - 312 147673966 fabD VC0395_A1608 - malonyl CoA-acyl carrier protein transacylase 1575 49.53 0 1729427..1730377 - 316 147673193 fabH-1 VC0395_A1609 - 3-oxoacyl-(acyl carrier protein) synthase III 1576 48.34 0 1730383..1731408 - 341 147675180 plsX VC0395_A1610 - putative glycerol-3-phosphate acyltransferase PlsX 1577 48.54 0 1731418..1731588 - 56 147674886 rpmF VC0395_A1611 - 50S ribosomal protein L32 1578 41.90 -1 1731623..1732147 - 174 147675692 - VC0395_A1612 - hypothetical protein 1579 45.02 0 1732295..1732876 + 193 147673643 - VC0395_A1613 - Maf-like protein 1580 48.95 0 1732977..1733924 - 315 147673109 rluC VC0395_A1614 - ribosomal large subunit pseudouridine synthase C 1581 48.48 0 1734545..1736611 + 688 147674453 - VC0395_A1615 - ribonuclease E 1582 53.25 +1 1736986..1737693 + 235 147673238 rne VC0395_A1616 - ribonuclease E 1583 49.30 0 1738041..1739606 + 521 147673538 - VC0395_A1617 - sulfate permease family protein 1584 50.23 0 1739724..1740599 + 291 147674001 - VC0395_A1618 - hypothetical protein 1585 48.72 0 1740709..1743393 - 894 147675521 adhE VC0395_A1619 - bifunctional acetaldehyde-CoA/alcohol dehydrogenase 1586 48.51 0 1744020..1744658 + 212 147673533 - VC0395_A1620 - hypothetical protein 1587 49.69 0 1744748..1745860 - 370 147673189 asd VC0395_A1621 - aspartate-semialdehyde dehydrogenase 1588 47.51 0 1746285..1747730 + 481 147675315 yqkI VC0395_A1622 - Na+/H+ antiporter 1589 46.77 0 1747765..1748970 - 401 147675464 - VC0395_A1623 - hypothetical protein 1590 44.61 0 1749133..1750134 - 333 147674919 - VC0395_A1624 - nucleoid-associated protein NdpA 1591 40.74 -1 1750219..1750434 + 71 147673537 - VC0395_A1625 - hypothetical protein 1592 45.76 0 1750469..1752271 + 600 147674285 - VC0395_A1626 - hypothetical protein 1593 49.73 0 1752729..1753649 - 306 147674598 - VC0395_A1629 - histone deacetylase/AcuC/AphA family protein 1594 49.13 0 1753670..1755613 - 647 147675446 topB VC0395_A1630 - DNA topoisomerase III 1595 48.05 0 1755698..1756030 - 110 147673099 - VC0395_A1631 - hypothetical protein 1596 47.35 0 1756282..1756866 + 194 147673867 sodB VC0395_A1632 - superoxide dismutase, Fe 1597 48.98 0 1756948..1757484 + 178 147674967 - VC0395_A1633 - hypothetical protein 1598 38.76 -2 1757825..1757953 - 42 147675696 - VC0395_A1634 - hypothetical protein 1599 46.70 0 1757853..1758533 + 226 147674021 - VC0395_A1635 - short chain dehydrogenase 1600 47.32 0 1758546..1759310 - 254 147674073 vacJ VC0395_A1636 - vacJ lipoprotein 1601 47.16 0 1759363..1760577 - 404 147675723 ccmH VC0395_A1637 - cytochrome c-type biogenesis protein CcmH 1602 46.33 0 1760580..1761056 - 158 147675051 - VC0395_A1638 - cytochrome c-type biogenesis protein CcmH 1603 45.05 0 1761053..1761607 - 184 147675010 dsbE VC0395_A1639 - thiol:disulfide interchange protein DsbE 1604 49.85 0 1761608..1763563 - 651 147674378 ccmF VC0395_A1640 - cytochrome c-type biogenesis protein CcmF 1605 47.83 0 1763560..1764042 - 160 147673770 ccmE VC0395_A1641 - cytochrome c-type biogenesis protein CcmE 1606 46.38 0 1764039..1764245 - 68 147673210 ccmD VC0395_A1642 - heme exporter protein D 1607 50.46 0 1764245..1764997 - 250 147674659 ccmC VC0395_A1643 - heme exporter protein C 1608 49.48 0 1765088..1765756 - 222 147673754 ccmB VC0395_A1644 - heme exporter protein B 1609 47.28 0 1765753..1766376 - 207 147673545 ccmA VC0395_A1645 - cytochrome c biogenesis protein CcmA 1610 47.42 0 1766750..1767253 - 167 147675281 - VC0395_A1646 - hypothetical protein 1611 45.90 0 1767229..1767753 - 174 147674307 cheW-1 VC0395_A1647 - purine-binding chemotaxis protein CheW 1612 46.80 0 1767762..1768778 - 338 147674008 - VC0395_A1648 - hypothetical protein 1613 46.20 0 1768771..1769547 - 258 147675595 - VC0395_A1649 - ParA family protein 1614 48.85 0 1769557..1770690 - 377 147674819 cheB-2 VC0395_A1650 - chemotaxis-specific methylesterase 1615 48.85 0 1770717..1773074 - 785 147674329 cheA-2 VC0395_A1651 - chemotaxis protein CheA 1616 45.28 0 1773084..1773803 - 239 147673688 cheZ VC0395_A1652 - chemotaxis protein CheZ 1617 42.24 -1 1773859..1774251 - 130 147675594 cheY-3 VC0395_A1653 - chemotaxis protein CheY 1618 45.44 0 1774273..1775007 - 244 147674794 fliA VC0395_A1654 - flagellar biosynthesis sigma factor 1619 47.77 0 1775000..1775941 - 313 147674338 - VC0395_A1655 - ParA family protein 1620 50.27 0 1775901..1777388 - 495 147673602 flhF VC0395_A1656 - flagellar biosynthesis regulator FlhF 1621 49.95 0 1777423..1779516 - 697 147675206 flhA VC0395_A1657 - flagellar biosynthesis protein FlhA 1622 49.37 0 1779848..1780321 - 157 147674345 sixA VC0395_A1658 - phosphohistidine phosphatase 1623 47.59 0 1780465..1783284 + 939 147675351 - VC0395_A1660 - peptidase insulinase family protein 1624 49.41 0 1783281..1783877 - 198 147673572 - VC0395_A1659 - hypothetical protein 1625 48.61 0 1784011..1785810 + 599 147673730 argS VC0395_A1661 - arginyl-tRNA synthetase 47.83 MEAN 3.88 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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