IslandPath Analysis: Vibrio cholerae O395



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 47.83   STD DEV: 3.88
Vibrio cholerae O395 chromosome 2, complete sequence - 1..3024069
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1362	 40.04	-2	1495945..1496406	-	153	147673501	-	VC0395_A1394	-	hypothetical protein
1363	 44.68	0	1496409..1497518	-	369	147675755	-	VC0395_A1395	-	hypothetical protein
1364	 47.61	0	1497490..1499247	-	585	147673618	-	VC0395_A1396	-	hypothetical protein
1365	 44.24	0	1499254..1500225	-	323	147674180	-	VC0395_A1397	-	hypothetical protein
1366	 38.33	-2	1500227..1500346	-	39	147674870	-	VC0395_A1398	-	hypothetical protein
1367	 38.82	-2	1500889..1501125	-	78	147675467	-	VC0395_A1399	-	hypothetical protein
1368	 40.48	-1	1501215..1501676	+	153	147674002	-	VC0395_A1400	-	hypothetical protein
1369	 48.25	0	1501903..1502217	+	104	147674565	-	VC0395_A1401	-	hypothetical protein
1370	 45.19	0	1502268..1502714	+	148	147674562	-	VC0395_A1402	-	hypothetical protein
1371	 43.36	-1	1502821..1503807	+	328	147673899	-	VC0395_A1403	-	hypothetical protein
1372	 33.79	-2	1503842..1504060	-	72	147673297	-	VC0395_A1404	-	hypothetical protein
1373	 29.08	-2	1504774..1505619	+	281	147675391	-	VC0395_A1405	-	hypothetical protein
1374	 47.19	0	1505734..1505964	-	76	147675012	-	VC0395_A1406	-	putative transcriptional regulator
1375	 43.63	-1	1506564..1506767	+	67	147675248	-	VC0395_A1408	-	hypothetical protein
1376	 47.05	0	1506759..1507232	-	157	147673789	-	VC0395_A1407	-	hypothetical protein
1377	 45.95	0	1507356..1507775	-	139	147674287	-	VC0395_A1409	-	hypothetical protein
1378	 50.58	0	1507892..1509277	+	461	147674040	cry1	VC0395_A1410	-	RNA-binding cryptochrome Cry1
1379	 52.82	+1	1509274..1509981	+	235	147673078	-	VC0395_A1411	-	C factor cell-cell signaling protein
1380	 45.37	0	1509992..1510207	-	71	147675532	-	VC0395_A1412	-	hypothetical protein
1381	 50.40	0	1510304..1512067	-	587	147674581	-	VC0395_A1413	-	sigma-54 dependent transcriptional regulator
1382	 49.51	0	1512348..1513868	+	506	147674305	aldA-2	VC0395_A1414	-	aldehyde dehydrogenase
1383	 37.41	-2	1514201..1514641	+	146	147674475	frvA	VC0395_A1415	-	PTS system, fructose-specific IIA component
1384	 49.79	0	1514653..1516056	+	467	147675511	frwBC	VC0395_A1416	-	PTS system, fructose-specific IIBC component
1385	 49.52	0	1516131..1517996	-	621	147673546	frwABC	VC0395_A1417	-	PTS system, fructose-specific IIABC component
1386	 49.33	0	1518213..1518512	+	99	147675767	frwB	VC0395_A1418	-	PTS system, fructose-specific IIB component
1387	 47.69	0	1518521..1519300	+	259	147674198	-	VC0395_A1420	-	putative PTS system, nitrogen regulatory IIA component
1388	 42.74	-1	1519292..1520131	-	279	147673124	-	VC0395_A1419	-	transcriptional regulator
1389	 50.37	0	1520503..1522404	+	633	147674929	fruA-1	VC0395_A1421	-	PTS system, fructose-specific IIABC component
1390	 46.10	0	1522520..1523686	+	388	147674804	manA-2	VC0395_A1422	-	mannose-6-phosphate isomerase
1391	 46.58	0	1523806..1524258	-	150	147675599	-	VC0395_A1423	-	hypothetical protein
1392	 45.05	0	1524594..1526804	-	736	147674034	-	VC0395_A1424	-	sensor histidine kinase
1393	 45.03	0	1527012..1527584	+	190	147674857	-	VC0395_A1425	-	hypothetical protein
1394	 46.70	0	1527658..1528719	-	353	147674242	nadA	VC0395_A1426	-	quinolinate synthetase
1395	 46.80	0	1528893..1529657	-	254	147673656	-	VC0395_A1427	-	hypothetical protein
1396	 47.40	0	1529673..1530191	-	172	147673661	pal	VC0395_A1428	-	peptidoglycan-associated lipoprotein
1397	 45.38	0	1530223..1531575	-	450	147674437	tolB	VC0395_A1429	-	translocation protein TolB
1398	 47.15	0	1531590..1532660	-	356	147673834	tolA	VC0395_A1430	-	tolA protein
1399	 43.08	-1	1532678..1533118	-	146	147673277	tolR	VC0395_A1431	-	tolR membrane protein
1400	 46.20	0	1533121..1533804	-	227	147674417	tolQ	VC0395_A1432	-	tolQ protein
1401	 41.03	-1	1533937..1534092	-	51	147673897	-	VC0395_A1433	-	short chain acyl-CoA thioesterase YbgC
1402	 47.05	0	1534799..1535935	-	378	147673360	cydB-1	VC0395_A1434	-	cytochrome d ubiquinol oxidase, subunit II
1403	 47.05	0	1535953..1537578	-	541	147674052	cydA-1	VC0395_A1435	-	cytochrome d ubiquinol oxidase, subunit I
1404	 47.06	0	1537998..1539002	-	334	147673267	ruvB	VC0395_A1436	-	Holliday junction DNA helicase B
1405	 48.29	0	1539058..1539672	-	204	147675231	ruvA	VC0395_A1437	-	Holliday junction DNA helicase motor protein
1406	 49.62	0	1539769..1540290	-	173	147673791	ruvC	VC0395_A1438	-	Holliday junction resolvase
1407	 46.59	0	1540378..1541757	-	459	147673703	cysS	VC0395_A1439	-	cysteinyl-tRNA synthetase
1408	 46.06	0	1541903..1542397	+	164	147675691	ppiB	VC0395_A1440	-	peptidyl-prolyl cis-trans isomerase B
1409	 43.32	-1	1542438..1543178	+	246	147674910	-	VC0395_A1441	-	UDP-2,3-diacylglucosamine hydrolase
1410	 43.62	-1	1543274..1544488	+	404	147675144	-	VC0395_A1442	-	hypothetical protein
1411	 43.42	-1	1544550..1545005	+	151	147674744	-	VC0395_A1443	-	hypothetical protein
1412	 37.04	-2	1545037..1545711	-	224	147673972	-	VC0395_A1444	-	hypothetical protein
1413	 41.92	-1	1545830..1546936	-	368	147675262	ompT	VC0395_A1445	-	ompT protein
1414	 46.64	0	1547337..1549448	+	703	147673160	dinG	VC0395_A1446	-	ATP-dependent DNA helicase DinG
1415	 50.00	0	1549486..1550265	+	259	147673887	-	VC0395_A1447	-	hypothetical protein
1416	 46.81	0	1550250..1550813	+	187	147674739	priC	VC0395_A1448	-	primosomal replication protein N``
1417	 47.89	0	1550814..1551026	+	70	147675268	-	VC0395_A1449	-	hypothetical protein
1418	 47.76	0	1551050..1553170	-	706	147673173	-	VC0395_A1450	-	methyl-accepting chemotaxis protein
1419	 46.10	0	1553368..1554174	+	268	147674047	xth	VC0395_A1451	-	exonuclease III
1420	 46.61	0	1554233..1554910	-	225	147674940	-	VC0395_A1452	-	amino acid ABC transporter, permease protein
1421	 48.40	0	1554913..1555695	-	260	147674527	-	VC0395_A1453	-	amino acid ABC transporter, permease protein
1422	 46.62	0	1555801..1556583	-	260	147673397	-	VC0395_A1454	-	amino acid ABC transporter, periplasmic amino acid-binding protein
1423	 47.08	0	1556762..1557532	-	256	147674682	-	VC0395_A1455	-	amino acid ABC transporter, ATP-binding protein
1424	 49.94	0	1558237..1559790	+	517	147674888	-	VC0395_A1456	-	hypothetical protein
1425	 47.93	0	1559969..1562332	+	787	147673272	pflB	VC0395_A1457	-	formate acetyltransferase
1426	 48.01	0	1562468..1563496	+	342	147673190	-	VC0395_A1458	-	hypothetical protein
1427	 47.16	0	1563514..1565394	-	626	147673779	-	VC0395_A1459	-	methyl-accepting chemotaxis protein
1428	 46.15	0	1565727..1566467	+	246	147674120	pflA	VC0395_A1460	-	pyruvate formate lyase-activating enzyme 1
1429	 46.91	0	1566533..1567195	+	220	147675077	-	VC0395_A1461	-	hypothetical protein
1430	 47.37	0	1567304..1567816	+	170	147675296	-	VC0395_A1462	-	hypothetical protein
1431	 47.08	0	1568057..1569991	+	644	147673471	-	VC0395_A1463	-	hypothetical protein
1432	 47.64	0	1570136..1571407	+	423	147673749	-	VC0395_A1464	-	hypothetical protein
1433	 46.81	0	1571420..1572970	+	516	147675162	-	VC0395_A1465	-	hypothetical protein
1434	 52.57	+1	1573055..1573813	-	252	147673188	kdsB	VC0395_A1466	-	3-deoxy-manno-octulosonate cytidylyltransferase
1435	 48.33	0	1573813..1573992	-	59	147673931	-	VC0395_A1467	-	hypothetical protein
1436	 51.24	0	1573973..1574983	-	336	147674626	lpxK	VC0395_A1468	-	tetraacyldisaccharide 4'-kinase
1437	 49.17	0	1574983..1576731	-	582	147675578	msbA	VC0395_A1469	-	lipid transporter ATP-binding/permease protein
1438	 49.40	0	1576762..1579020	-	752	147673615	-	VC0395_A1470	-	ComEC/rec2 family protein
1439	 50.09	0	1579014..1579544	+	176	147674248	-	VC0395_A1471	-	hypothetical protein
1440	 51.08	0	1579659..1580903	-	414	147674975	-	VC0395_A1472	-	outer membrane-specific lipoprotein transporter subunit LolE
1441	 49.78	0	1580904..1581590	-	228	147675470	-	VC0395_A1473	-	ABC transporter, ATP-binding protein
1442	 51.60	0	1581583..1582803	-	406	147675143	-	VC0395_A1474	-	hypothetical protein
1443	 48.61	0	1582967..1583542	+	191	147674654	-	VC0395_A1475	-	hypothetical protein
1444	 51.01	0	1583545..1587012	+	1155	147674778	mfd	VC0395_A1476	-	transcription-repair coupling factor
1445	 48.31	0	1587152..1587952	+	266	147675587	-	VC0395_A1477	-	hypothetical protein
1446	 47.74	0	1588287..1590362	+	691	147675607	-	VC0395_A1478	-	hypothetical protein
1447	 46.37	0	1590647..1591183	+	178	147673417	-	VC0395_A1479	-	putative ribosomal-protein-serine acetyltransferase
1448	 48.89	0	1591296..1592600	-	434	147674696	ndh	VC0395_A1480	-	NADH dehydrogenase
1449	 39.72	-2	1592686..1592826	+	46	147675275	-	VC0395_A1481	-	hypothetical protein
1450	 43.52	-1	1592943..1593482	-	179	147673914	-	VC0395_A1482	-	hypothetical protein
1451	 49.25	0	1593662..1594522	-	286	147673327	-	VC0395_A1483	-	hypothetical protein
1452	 45.35	0	1594550..1595140	-	196	147673411	-	VC0395_A1484	-	putative lipoprotein
1453	 46.15	0	1595193..1595582	-	129	147673225	-	VC0395_A1485	-	putative lipoprotein
1454	 48.13	0	1595582..1597000	-	472	147674989	-	VC0395_A1486	-	hypothetical protein
1455	 47.86	0	1597013..1597363	-	116	147674459	-	VC0395_A1487	-	histidine triad family protein
1456	 48.59	0	1597596..1599614	+	672	147674132	-	VC0395_A1488	-	methyl-accepting chemotaxis protein
1457	 48.26	0	1599784..1600935	+	383	147673346	-	VC0395_A1489	-	hypothetical protein
1458	 44.88	0	1601170..1602009	-	279	147675341	fadR	VC0395_A1490	-	fatty acid metabolism regulator
1459	 46.96	0	1602654..1604246	+	530	147674405	nhaB	VC0395_A1491	-	sodium/proton antiporter
1460	 48.85	0	1604326..1604847	+	173	147674425	dsbB	VC0395_A1492	-	disulfide bond formation protein B
1461	 49.15	0	1604923..1607805	-	960	147673704	-	VC0395_A1493	-	putative cell division protein FtsK
47.83	MEAN

3.88	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.