version 1.0
Vibrio cholerae O395 chromosome 2, complete sequence - 1..3024069 2742 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1329 40.14 -1 1456001..1456735 - 244 147673520 - VC0395_A1361 - hypothetical protein 1330 41.35 -1 1456728..1458848 - 706 147675323 - VC0395_A1362 - hypothetical protein 1331 43.34 -1 1458893..1461961 - 1022 147674712 - VC0395_A1363 - putative type I restriction enzyme HsdR 1332 43.22 -1 1461989..1463980 - 663 147675278 - VC0395_A1364 - hypothetical protein 1333 44.94 0 1463973..1465385 - 470 147675030 - VC0395_A1365 - hypothetical protein 1334 40.68 -1 1465386..1466774 - 462 147674628 - VC0395_A1366 - hypothetical protein 1335 43.87 -1 1466731..1469112 - 793 147674983 - VC0395_A1367 - putative DNA methylase HsdM 1336 41.67 -1 1469253..1471316 - 687 147674006 - VC0395_A1368 - hypothetical protein 1337 41.82 -1 1471298..1474960 - 1220 147673329 - VC0395_A1369 - hypothetical protein 1338 44.83 0 1474988..1475848 + 286 147675105 - VC0395_A1370 - hypothetical protein 1339 36.13 -2 1475913..1476983 - 356 147674523 - VC0395_A1371 - hypothetical protein 1340 41.65 -1 1476998..1478152 - 384 147673747 - VC0395_A1372 - hypothetical protein 1341 43.61 -1 1478334..1479170 - 278 147675662 - VC0395_A1373 - hypothetical protein 1342 43.14 -1 1479299..1480195 - 298 147675305 - VC0395_A1374 - dihydrodipicolinate synthetase family protein 1343 45.33 0 1480233..1481516 - 427 147675054 - VC0395_A1375 - hypothetical protein 1344 41.19 -1 1481524..1482045 - 173 147675211 - VC0395_A1376 - hypothetical protein 1345 44.62 0 1482096..1483061 - 321 147673037 dctP-1 VC0395_A1377 - C4-dicarboxylate-binding periplasmic protein 1346 47.03 0 1483276..1483998 + 240 147674046 - VC0395_A1378 - N-acetylmannosamine-6-phosphate 2-epimerase 1347 45.02 0 1483986..1484849 + 287 147674472 - VC0395_A1379 - N-acetylmannosamine kinase 1348 44.94 0 1484853..1485989 + 378 147674908 nagA-2 VC0395_A1380 - N-acetylglucosamine-6-phosphate deacetylase 1349 45.17 0 1486334..1488757 + 807 147673281 nanH VC0395_A1381 - neuraminidase 1350 44.44 0 1488904..1489110 - 68 147673587 - VC0395_A1382 - transcriptional regulator 1351 48.85 0 1489224..1489700 + 158 147674352 - VC0395_A1383 - putative DNA repair protein RadC 1352 46.97 0 1489703..1489834 + 43 147674468 - VC0395_A1384 - hypothetical protein 1353 43.10 -1 1489930..1490625 - 231 147673665 - VC0395_A1385 - hypothetical protein 1354 44.44 0 1490622..1491494 - 290 147675565 orfB VC0395_A1386 - transposase OrfAB, subunit B 1355 43.19 -1 1491491..1491835 - 114 147674768 orfA VC0395_A1387 - transposase OrfAB, subunit A 1356 44.00 0 1491842..1492882 - 346 147674028 - VC0395_A1388 - hypothetical protein 1357 42.78 -1 1493017..1493376 - 119 147673269 - VC0395_A1389 - hypothetical protein 1358 39.15 -2 1493425..1493802 - 125 147675221 - VC0395_A1390 - hypothetical protein 1359 37.82 -2 1493857..1494435 - 192 147674482 - VC0395_A1391 - hypothetical protein 1360 38.94 -2 1494454..1494774 - 106 147674980 - VC0395_A1392 - putative transcriptional regulator 1361 39.73 -2 1494761..1495135 - 124 147673865 - VC0395_A1393 - putative transcriptional regulator 1362 40.04 -2 1495945..1496406 - 153 147673501 - VC0395_A1394 - hypothetical protein 1363 44.68 0 1496409..1497518 - 369 147675755 - VC0395_A1395 - hypothetical protein 1364 47.61 0 1497490..1499247 - 585 147673618 - VC0395_A1396 - hypothetical protein 1365 44.24 0 1499254..1500225 - 323 147674180 - VC0395_A1397 - hypothetical protein 1366 38.33 -2 1500227..1500346 - 39 147674870 - VC0395_A1398 - hypothetical protein 1367 38.82 -2 1500889..1501125 - 78 147675467 - VC0395_A1399 - hypothetical protein 1368 40.48 -1 1501215..1501676 + 153 147674002 - VC0395_A1400 - hypothetical protein 1369 48.25 0 1501903..1502217 + 104 147674565 - VC0395_A1401 - hypothetical protein 1370 45.19 0 1502268..1502714 + 148 147674562 - VC0395_A1402 - hypothetical protein 1371 43.36 -1 1502821..1503807 + 328 147673899 - VC0395_A1403 - hypothetical protein 1372 33.79 -2 1503842..1504060 - 72 147673297 - VC0395_A1404 - hypothetical protein 1373 29.08 -2 1504774..1505619 + 281 147675391 - VC0395_A1405 - hypothetical protein 1374 47.19 0 1505734..1505964 - 76 147675012 - VC0395_A1406 - putative transcriptional regulator 1375 43.63 -1 1506564..1506767 + 67 147675248 - VC0395_A1408 - hypothetical protein 1376 47.05 0 1506759..1507232 - 157 147673789 - VC0395_A1407 - hypothetical protein 1377 45.95 0 1507356..1507775 - 139 147674287 - VC0395_A1409 - hypothetical protein 1378 50.58 0 1507892..1509277 + 461 147674040 cry1 VC0395_A1410 - RNA-binding cryptochrome Cry1 1379 52.82 +1 1509274..1509981 + 235 147673078 - VC0395_A1411 - C factor cell-cell signaling protein 1380 45.37 0 1509992..1510207 - 71 147675532 - VC0395_A1412 - hypothetical protein 1381 50.40 0 1510304..1512067 - 587 147674581 - VC0395_A1413 - sigma-54 dependent transcriptional regulator 1382 49.51 0 1512348..1513868 + 506 147674305 aldA-2 VC0395_A1414 - aldehyde dehydrogenase 1383 37.41 -2 1514201..1514641 + 146 147674475 frvA VC0395_A1415 - PTS system, fructose-specific IIA component 1384 49.79 0 1514653..1516056 + 467 147675511 frwBC VC0395_A1416 - PTS system, fructose-specific IIBC component 1385 49.52 0 1516131..1517996 - 621 147673546 frwABC VC0395_A1417 - PTS system, fructose-specific IIABC component 1386 49.33 0 1518213..1518512 + 99 147675767 frwB VC0395_A1418 - PTS system, fructose-specific IIB component 1387 47.69 0 1518521..1519300 + 259 147674198 - VC0395_A1420 - putative PTS system, nitrogen regulatory IIA component 1388 42.74 -1 1519292..1520131 - 279 147673124 - VC0395_A1419 - transcriptional regulator 1389 50.37 0 1520503..1522404 + 633 147674929 fruA-1 VC0395_A1421 - PTS system, fructose-specific IIABC component 1390 46.10 0 1522520..1523686 + 388 147674804 manA-2 VC0395_A1422 - mannose-6-phosphate isomerase 1391 46.58 0 1523806..1524258 - 150 147675599 - VC0395_A1423 - hypothetical protein 1392 45.05 0 1524594..1526804 - 736 147674034 - VC0395_A1424 - sensor histidine kinase 1393 45.03 0 1527012..1527584 + 190 147674857 - VC0395_A1425 - hypothetical protein 1394 46.70 0 1527658..1528719 - 353 147674242 nadA VC0395_A1426 - quinolinate synthetase 1395 46.80 0 1528893..1529657 - 254 147673656 - VC0395_A1427 - hypothetical protein 1396 47.40 0 1529673..1530191 - 172 147673661 pal VC0395_A1428 - peptidoglycan-associated lipoprotein 1397 45.38 0 1530223..1531575 - 450 147674437 tolB VC0395_A1429 - translocation protein TolB 1398 47.15 0 1531590..1532660 - 356 147673834 tolA VC0395_A1430 - tolA protein 1399 43.08 -1 1532678..1533118 - 146 147673277 tolR VC0395_A1431 - tolR membrane protein 1400 46.20 0 1533121..1533804 - 227 147674417 tolQ VC0395_A1432 - tolQ protein 1401 41.03 -1 1533937..1534092 - 51 147673897 - VC0395_A1433 - short chain acyl-CoA thioesterase YbgC 1402 47.05 0 1534799..1535935 - 378 147673360 cydB-1 VC0395_A1434 - cytochrome d ubiquinol oxidase, subunit II 1403 47.05 0 1535953..1537578 - 541 147674052 cydA-1 VC0395_A1435 - cytochrome d ubiquinol oxidase, subunit I 1404 47.06 0 1537998..1539002 - 334 147673267 ruvB VC0395_A1436 - Holliday junction DNA helicase B 1405 48.29 0 1539058..1539672 - 204 147675231 ruvA VC0395_A1437 - Holliday junction DNA helicase motor protein 1406 49.62 0 1539769..1540290 - 173 147673791 ruvC VC0395_A1438 - Holliday junction resolvase 1407 46.59 0 1540378..1541757 - 459 147673703 cysS VC0395_A1439 - cysteinyl-tRNA synthetase 1408 46.06 0 1541903..1542397 + 164 147675691 ppiB VC0395_A1440 - peptidyl-prolyl cis-trans isomerase B 1409 43.32 -1 1542438..1543178 + 246 147674910 - VC0395_A1441 - UDP-2,3-diacylglucosamine hydrolase 1410 43.62 -1 1543274..1544488 + 404 147675144 - VC0395_A1442 - hypothetical protein 1411 43.42 -1 1544550..1545005 + 151 147674744 - VC0395_A1443 - hypothetical protein 1412 37.04 -2 1545037..1545711 - 224 147673972 - VC0395_A1444 - hypothetical protein 1413 41.92 -1 1545830..1546936 - 368 147675262 ompT VC0395_A1445 - ompT protein 1414 46.64 0 1547337..1549448 + 703 147673160 dinG VC0395_A1446 - ATP-dependent DNA helicase DinG 1415 50.00 0 1549486..1550265 + 259 147673887 - VC0395_A1447 - hypothetical protein 1416 46.81 0 1550250..1550813 + 187 147674739 priC VC0395_A1448 - primosomal replication protein N`` 1417 47.89 0 1550814..1551026 + 70 147675268 - VC0395_A1449 - hypothetical protein 1418 47.76 0 1551050..1553170 - 706 147673173 - VC0395_A1450 - methyl-accepting chemotaxis protein 1419 46.10 0 1553368..1554174 + 268 147674047 xth VC0395_A1451 - exonuclease III 1420 46.61 0 1554233..1554910 - 225 147674940 - VC0395_A1452 - amino acid ABC transporter, permease protein 1421 48.40 0 1554913..1555695 - 260 147674527 - VC0395_A1453 - amino acid ABC transporter, permease protein 1422 46.62 0 1555801..1556583 - 260 147673397 - VC0395_A1454 - amino acid ABC transporter, periplasmic amino acid-binding protein 1423 47.08 0 1556762..1557532 - 256 147674682 - VC0395_A1455 - amino acid ABC transporter, ATP-binding protein 1424 49.94 0 1558237..1559790 + 517 147674888 - VC0395_A1456 - hypothetical protein 1425 47.93 0 1559969..1562332 + 787 147673272 pflB VC0395_A1457 - formate acetyltransferase 1426 48.01 0 1562468..1563496 + 342 147673190 - VC0395_A1458 - hypothetical protein 1427 47.16 0 1563514..1565394 - 626 147673779 - VC0395_A1459 - methyl-accepting chemotaxis protein 1428 46.15 0 1565727..1566467 + 246 147674120 pflA VC0395_A1460 - pyruvate formate lyase-activating enzyme 1 47.83 MEAN 3.88 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0