IslandPath Analysis: Vibrio cholerae O395



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 47.83   STD DEV: 3.88
Vibrio cholerae O395 chromosome 2, complete sequence - 1..3024069
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1318	 44.12	0	1437646..1438767	+	373	147674444	-	VC0395_A1349	-	hypothetical protein
1319	 45.39	0	1438783..1439661	-	292	147675699	-	VC0395_A1350	-	hypothetical protein
1320	 45.21	0	1440714..1442018	+	434	147675036	pqiA	VC0395_A1351	-	paraquat-inducible protein A
1321	 45.80	0	1442015..1443658	+	547	147675648	pqiB	VC0395_A1352	-	paraquat-inducible protein B
1322	 48.70	0	1443655..1444233	+	192	147673513	-	VC0395_A1353	-	putative lipoprotein
1323	 51.05	0	1444449..1445543	+	364	147675452	-	VC0395_A1354	-	HlyD family secretion protein
1324	 52.97	+1	1445543..1448593	+	1016	147673314	-	VC0395_A1355	-	AcrB/AcrD/AcrF family transporter
1325	 44.09	0	1449205..1450440	+	411	147675094	-	VC0395_A1357	-	phage family integrase
1326	 46.96	0	1450515..1450991	+	158	147675635	-	VC0395_A1358	-	integrase, truncation
1327	 40.92	-1	1451122..1454562	-	1146	147675032	-	VC0395_A1359	-	hypothetical protein
1328	 40.56	-1	1454553..1456004	-	483	147674089	-	VC0395_A1360	-	hypothetical protein
1329	 40.14	-1	1456001..1456735	-	244	147673520	-	VC0395_A1361	-	hypothetical protein
1330	 41.35	-1	1456728..1458848	-	706	147675323	-	VC0395_A1362	-	hypothetical protein
1331	 43.34	-1	1458893..1461961	-	1022	147674712	-	VC0395_A1363	-	putative type I restriction enzyme HsdR
1332	 43.22	-1	1461989..1463980	-	663	147675278	-	VC0395_A1364	-	hypothetical protein
1333	 44.94	0	1463973..1465385	-	470	147675030	-	VC0395_A1365	-	hypothetical protein
1334	 40.68	-1	1465386..1466774	-	462	147674628	-	VC0395_A1366	-	hypothetical protein
1335	 43.87	-1	1466731..1469112	-	793	147674983	-	VC0395_A1367	-	putative DNA methylase HsdM
1336	 41.67	-1	1469253..1471316	-	687	147674006	-	VC0395_A1368	-	hypothetical protein
1337	 41.82	-1	1471298..1474960	-	1220	147673329	-	VC0395_A1369	-	hypothetical protein
1338	 44.83	0	1474988..1475848	+	286	147675105	-	VC0395_A1370	-	hypothetical protein
1339	 36.13	-2	1475913..1476983	-	356	147674523	-	VC0395_A1371	-	hypothetical protein
1340	 41.65	-1	1476998..1478152	-	384	147673747	-	VC0395_A1372	-	hypothetical protein
1341	 43.61	-1	1478334..1479170	-	278	147675662	-	VC0395_A1373	-	hypothetical protein
1342	 43.14	-1	1479299..1480195	-	298	147675305	-	VC0395_A1374	-	dihydrodipicolinate synthetase family protein
1343	 45.33	0	1480233..1481516	-	427	147675054	-	VC0395_A1375	-	hypothetical protein
1344	 41.19	-1	1481524..1482045	-	173	147675211	-	VC0395_A1376	-	hypothetical protein
1345	 44.62	0	1482096..1483061	-	321	147673037	dctP-1	VC0395_A1377	-	C4-dicarboxylate-binding periplasmic protein
1346	 47.03	0	1483276..1483998	+	240	147674046	-	VC0395_A1378	-	N-acetylmannosamine-6-phosphate 2-epimerase
1347	 45.02	0	1483986..1484849	+	287	147674472	-	VC0395_A1379	-	N-acetylmannosamine kinase
1348	 44.94	0	1484853..1485989	+	378	147674908	nagA-2	VC0395_A1380	-	N-acetylglucosamine-6-phosphate deacetylase
1349	 45.17	0	1486334..1488757	+	807	147673281	nanH	VC0395_A1381	-	neuraminidase
1350	 44.44	0	1488904..1489110	-	68	147673587	-	VC0395_A1382	-	transcriptional regulator
1351	 48.85	0	1489224..1489700	+	158	147674352	-	VC0395_A1383	-	putative DNA repair protein RadC
1352	 46.97	0	1489703..1489834	+	43	147674468	-	VC0395_A1384	-	hypothetical protein
1353	 43.10	-1	1489930..1490625	-	231	147673665	-	VC0395_A1385	-	hypothetical protein
1354	 44.44	0	1490622..1491494	-	290	147675565	orfB	VC0395_A1386	-	transposase OrfAB, subunit B
1355	 43.19	-1	1491491..1491835	-	114	147674768	orfA	VC0395_A1387	-	transposase OrfAB, subunit A
1356	 44.00	0	1491842..1492882	-	346	147674028	-	VC0395_A1388	-	hypothetical protein
1357	 42.78	-1	1493017..1493376	-	119	147673269	-	VC0395_A1389	-	hypothetical protein
1358	 39.15	-2	1493425..1493802	-	125	147675221	-	VC0395_A1390	-	hypothetical protein
1359	 37.82	-2	1493857..1494435	-	192	147674482	-	VC0395_A1391	-	hypothetical protein
1360	 38.94	-2	1494454..1494774	-	106	147674980	-	VC0395_A1392	-	putative transcriptional regulator
1361	 39.73	-2	1494761..1495135	-	124	147673865	-	VC0395_A1393	-	putative transcriptional regulator
1362	 40.04	-2	1495945..1496406	-	153	147673501	-	VC0395_A1394	-	hypothetical protein
1363	 44.68	0	1496409..1497518	-	369	147675755	-	VC0395_A1395	-	hypothetical protein
1364	 47.61	0	1497490..1499247	-	585	147673618	-	VC0395_A1396	-	hypothetical protein
1365	 44.24	0	1499254..1500225	-	323	147674180	-	VC0395_A1397	-	hypothetical protein
1366	 38.33	-2	1500227..1500346	-	39	147674870	-	VC0395_A1398	-	hypothetical protein
1367	 38.82	-2	1500889..1501125	-	78	147675467	-	VC0395_A1399	-	hypothetical protein
1368	 40.48	-1	1501215..1501676	+	153	147674002	-	VC0395_A1400	-	hypothetical protein
1369	 48.25	0	1501903..1502217	+	104	147674565	-	VC0395_A1401	-	hypothetical protein
1370	 45.19	0	1502268..1502714	+	148	147674562	-	VC0395_A1402	-	hypothetical protein
1371	 43.36	-1	1502821..1503807	+	328	147673899	-	VC0395_A1403	-	hypothetical protein
1372	 33.79	-2	1503842..1504060	-	72	147673297	-	VC0395_A1404	-	hypothetical protein
1373	 29.08	-2	1504774..1505619	+	281	147675391	-	VC0395_A1405	-	hypothetical protein
1374	 47.19	0	1505734..1505964	-	76	147675012	-	VC0395_A1406	-	putative transcriptional regulator
1375	 43.63	-1	1506564..1506767	+	67	147675248	-	VC0395_A1408	-	hypothetical protein
1376	 47.05	0	1506759..1507232	-	157	147673789	-	VC0395_A1407	-	hypothetical protein
1377	 45.95	0	1507356..1507775	-	139	147674287	-	VC0395_A1409	-	hypothetical protein
1378	 50.58	0	1507892..1509277	+	461	147674040	cry1	VC0395_A1410	-	RNA-binding cryptochrome Cry1
1379	 52.82	+1	1509274..1509981	+	235	147673078	-	VC0395_A1411	-	C factor cell-cell signaling protein
1380	 45.37	0	1509992..1510207	-	71	147675532	-	VC0395_A1412	-	hypothetical protein
1381	 50.40	0	1510304..1512067	-	587	147674581	-	VC0395_A1413	-	sigma-54 dependent transcriptional regulator
1382	 49.51	0	1512348..1513868	+	506	147674305	aldA-2	VC0395_A1414	-	aldehyde dehydrogenase
1383	 37.41	-2	1514201..1514641	+	146	147674475	frvA	VC0395_A1415	-	PTS system, fructose-specific IIA component
1384	 49.79	0	1514653..1516056	+	467	147675511	frwBC	VC0395_A1416	-	PTS system, fructose-specific IIBC component
1385	 49.52	0	1516131..1517996	-	621	147673546	frwABC	VC0395_A1417	-	PTS system, fructose-specific IIABC component
1386	 49.33	0	1518213..1518512	+	99	147675767	frwB	VC0395_A1418	-	PTS system, fructose-specific IIB component
1387	 47.69	0	1518521..1519300	+	259	147674198	-	VC0395_A1420	-	putative PTS system, nitrogen regulatory IIA component
1388	 42.74	-1	1519292..1520131	-	279	147673124	-	VC0395_A1419	-	transcriptional regulator
1389	 50.37	0	1520503..1522404	+	633	147674929	fruA-1	VC0395_A1421	-	PTS system, fructose-specific IIABC component
1390	 46.10	0	1522520..1523686	+	388	147674804	manA-2	VC0395_A1422	-	mannose-6-phosphate isomerase
1391	 46.58	0	1523806..1524258	-	150	147675599	-	VC0395_A1423	-	hypothetical protein
1392	 45.05	0	1524594..1526804	-	736	147674034	-	VC0395_A1424	-	sensor histidine kinase
1393	 45.03	0	1527012..1527584	+	190	147674857	-	VC0395_A1425	-	hypothetical protein
1394	 46.70	0	1527658..1528719	-	353	147674242	nadA	VC0395_A1426	-	quinolinate synthetase
1395	 46.80	0	1528893..1529657	-	254	147673656	-	VC0395_A1427	-	hypothetical protein
1396	 47.40	0	1529673..1530191	-	172	147673661	pal	VC0395_A1428	-	peptidoglycan-associated lipoprotein
1397	 45.38	0	1530223..1531575	-	450	147674437	tolB	VC0395_A1429	-	translocation protein TolB
1398	 47.15	0	1531590..1532660	-	356	147673834	tolA	VC0395_A1430	-	tolA protein
1399	 43.08	-1	1532678..1533118	-	146	147673277	tolR	VC0395_A1431	-	tolR membrane protein
1400	 46.20	0	1533121..1533804	-	227	147674417	tolQ	VC0395_A1432	-	tolQ protein
1401	 41.03	-1	1533937..1534092	-	51	147673897	-	VC0395_A1433	-	short chain acyl-CoA thioesterase YbgC
1402	 47.05	0	1534799..1535935	-	378	147673360	cydB-1	VC0395_A1434	-	cytochrome d ubiquinol oxidase, subunit II
1403	 47.05	0	1535953..1537578	-	541	147674052	cydA-1	VC0395_A1435	-	cytochrome d ubiquinol oxidase, subunit I
1404	 47.06	0	1537998..1539002	-	334	147673267	ruvB	VC0395_A1436	-	Holliday junction DNA helicase B
1405	 48.29	0	1539058..1539672	-	204	147675231	ruvA	VC0395_A1437	-	Holliday junction DNA helicase motor protein
1406	 49.62	0	1539769..1540290	-	173	147673791	ruvC	VC0395_A1438	-	Holliday junction resolvase
1407	 46.59	0	1540378..1541757	-	459	147673703	cysS	VC0395_A1439	-	cysteinyl-tRNA synthetase
1408	 46.06	0	1541903..1542397	+	164	147675691	ppiB	VC0395_A1440	-	peptidyl-prolyl cis-trans isomerase B
1409	 43.32	-1	1542438..1543178	+	246	147674910	-	VC0395_A1441	-	UDP-2,3-diacylglucosamine hydrolase
1410	 43.62	-1	1543274..1544488	+	404	147675144	-	VC0395_A1442	-	hypothetical protein
1411	 43.42	-1	1544550..1545005	+	151	147674744	-	VC0395_A1443	-	hypothetical protein
1412	 37.04	-2	1545037..1545711	-	224	147673972	-	VC0395_A1444	-	hypothetical protein
1413	 41.92	-1	1545830..1546936	-	368	147675262	ompT	VC0395_A1445	-	ompT protein
1414	 46.64	0	1547337..1549448	+	703	147673160	dinG	VC0395_A1446	-	ATP-dependent DNA helicase DinG
1415	 50.00	0	1549486..1550265	+	259	147673887	-	VC0395_A1447	-	hypothetical protein
1416	 46.81	0	1550250..1550813	+	187	147674739	priC	VC0395_A1448	-	primosomal replication protein N``
1417	 47.89	0	1550814..1551026	+	70	147675268	-	VC0395_A1449	-	hypothetical protein
47.83	MEAN

3.88	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.