IslandPathversion 1.0

IslandPath Analysis: Vibrio cholerae O395



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.83 STD DEV: 3.88
Vibrio cholerae O395 chromosome 2, complete sequence - 1..3024069
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1189	 39.04	-2	1281773..1282210	-	145	147675585	tnpA	VC0395_A1220	-	IS1004 transposase
1190	 47.65	0	1282254..1283189	-	311	147675312	-	VC0395_A1221	-	putative SAM-dependent methyltransferase
1191	 43.27	-1	1283186..1283698	-	170	147673336	-	VC0395_A1222	-	hypothetical protein
1192	 44.44	0	1283866..1284099	+	77	147673861	-	VC0395_A1223	-	putative glutaredoxin
1193	 45.29	0	1284129..1284998	-	289	147674340	-	VC0395_A1224	-	LysR family transcriptional regulator
1194	 49.43	0	1285104..1286321	+	405	147675274	-	VC0395_A1225	-	putative multidrug resistance protein
1195	 44.63	0	1286378..1286926	+	182	147675553	-	VC0395_A1226	-	hypothetical protein
1196	 48.64	0	1287036..1293791	-	2251	147675379	-	VC0395_A1227	-	cadherin domain-containing protein
1197	 46.26	0	1294188..1295525	+	445	147674567	-	VC0395_A1228	-	agglutination protein
1198	 46.64	0	1295527..1296165	+	212	147673877	-	VC0395_A1229	-	putative outer membrane protein
1199	 45.79	0	1296301..1297464	-	387	147673110	nspC	VC0395_A1230	-	carboxynorspermidine decarboxylase
1200	 47.79	0	1297700..1298944	-	414	147675770	-	VC0395_A1231	-	hypothetical protein
1201	 49.51	0	1298958..1301843	-	961	147674813	-	VC0395_A1232	-	aminotransferase, class III/decarboxylase, group II
1202	 47.43	0	1302441..1303589	-	382	147674219	nhaA	VC0395_A1233	-	pH-dependent sodium/proton antiporter
1203	 49.24	0	1303868..1304986	-	372	147674640	-	VC0395_A1234	-	hypothetical protein
1204	 48.43	0	1304987..1307497	-	836	147674224	-	VC0395_A1235	-	hypothetical protein
1205	 49.85	0	1307421..1308104	-	227	147673170	-	VC0395_A1236	-	ABC transporter, ATP-binding protein
1206	 50.54	0	1308218..1309594	-	458	147673464	-	VC0395_A1237	-	hypothetical protein
1207	 51.43	0	1309722..1311158	+	478	147675522	-	VC0395_A1238	-	hypothetical protein
1208	 46.52	0	1311262..1311921	-	219	147675444	-	VC0395_A1239	-	hypothetical protein
1209	 50.91	0	1311921..1313126	-	401	147674586	-	VC0395_A1240	-	bicyclomycin/multidrug efflux system
1210	 47.70	0	1313445..1314140	-	231	147673094	-	VC0395_A1241	-	ribosomal small subunit pseudouridine synthase A
1211	 51.22	0	1314085..1316058	+	657	147675688	-	VC0395_A1242	-	DEAD-box ATP dependent DNA helicase
1212	 46.32	0	1316323..1316730	+	135	147674733	-	VC0395_A1243	-	hypothetical protein
1213	 49.39	0	1316742..1317401	+	219	147675175	-	VC0395_A1244	-	DNA-binding response regulator
1214	 49.39	0	1317376..1318764	+	462	147674624	-	VC0395_A1245	-	sensor histidine kinase
1215	 48.03	0	1318922..1319200	+	92	147673862	rplY	VC0395_A1246	-	50S ribosomal protein L25
1216	 38.50	-2	1319350..1320123	-	257	147673935	-	VC0395_A1247	-	hypothetical protein
1217	 48.01	0	1320215..1320616	-	133	147673091	-	VC0395_A1248	-	hypothetical protein
1218	 47.29	0	1320807..1322597	+	596	147675407	-	VC0395_A1249	-	methyl-accepting chemotaxis protein
1219	 47.71	0	1322929..1324173	+	414	147674596	-	VC0395_A1250	-	hypothetical protein
1220	 45.81	0	1324290..1324898	-	202	147674141	-	VC0395_A1251	-	HAD family phosphatase
1221	 46.08	0	1325069..1325272	-	67	147673416	-	VC0395_A1252	-	hypothetical protein
1222	 48.43	0	1325313..1327226	+	637	147675106	-	VC0395_A1253	-	hypothetical protein
1223	 42.50	-1	1327307..1328953	-	548	147673259	-	VC0395_A1254	-	putative trypsin
1224	 48.09	0	1329281..1330039	+	252	147675491	vcc	VC0395_A1255	-	collagenase
1225	 48.21	0	1330081..1331700	+	539	147675061	-	VC0395_A1256	-	collagenase
1226	 44.95	0	1331734..1333395	-	553	147675675	vieB	VC0395_A1257	-	response regulator VieB
1227	 46.84	0	1333407..1335161	-	584	147675130	vieA	VC0395_A1258	-	response regulator VieA
1228	 43.53	-1	1335166..1338606	-	1146	147674544	vieS	VC0395_A1259	-	sensory box sensor histidine kinase/response regulator VieS
1229	 49.93	0	1339397..1340752	+	451	147673853	mgtE-1	VC0395_A1260	-	magnesium transporter
1230	 48.38	0	1340835..1341698	-	287	147675291	-	VC0395_A1261	-	hypothetical protein
1231	 48.09	0	1342035..1343288	+	417	147674660	sdaC-2	VC0395_A1262	-	serine transporter
1232	 51.69	0	1343457..1344404	+	315	147674063	-	VC0395_A1263	-	hypothetical protein
1233	 48.98	0	1344414..1345340	+	308	147674145	-	VC0395_A1264	-	putative ABC transporter, ATP-binding protein
1234	 47.54	0	1345337..1346434	+	365	147675256	-	VC0395_A1265	-	ABC-type multidrug transport system, permease component
1235	 44.59	0	1346593..1346814	+	73	147673052	-	VC0395_A1266	-	hypothetical protein
1236	 48.69	0	1346820..1347086	-	88	147673854	-	VC0395_A1267	-	hypothetical protein
1237	 47.07	0	1347233..1347676	+	147	147674423	hslJ	VC0395_A1268	-	heat shock protein HslJ
1238	 49.17	0	1347884..1349032	+	382	147675331	-	VC0395_A1269	-	hypothetical protein
1239	 50.03	0	1349046..1350746	+	566	147673944	-	VC0395_A1270	-	putative ABC transporter, permease protein
1240	 48.42	0	1350712..1351374	+	220	147674206	-	VC0395_A1271	-	putative ABC transporter, ATP-binding protein
1241	 48.95	0	1351367..1351987	+	206	147674766	-	VC0395_A1272	-	hypothetical protein
1242	 47.88	0	1352046..1352753	-	235	147675726	-	VC0395_A1273	-	pseudouridine synthase Rlu family protein
1243	 47.22	0	1352861..1354207	-	448	147674860	-	VC0395_A1274	-	putative sodium-dependent transporter
1244	 48.93	0	1354763..1356217	+	484	147675655	cls	VC0395_A1275	-	cardiolipin synthetase
1245	 50.46	0	1356298..1357488	+	396	147673284	metC	VC0395_A1276	-	cystathionine beta-lyase
1246	 48.28	0	1357575..1358156	-	193	147674071	tag	VC0395_A1277	-	DNA-3-methyladenine glycosidase I
1247	 49.73	0	1358243..1361341	-	1032	147674680	-	VC0395_A1278	-	AcrB/AcrD/AcrF family transporter
1248	 49.26	0	1361334..1362413	-	359	147675113	-	VC0395_A1279	-	HlyD family secretion protein
1249	 50.78	0	1362415..1363446	-	343	147673434	-	VC0395_A1280	-	putative multidrug resistance protein
1250	 52.56	+1	1363618..1364007	-	129	147673938	pspC	VC0395_A1281	-	phage shock protein C
1251	 49.15	0	1364000..1364233	-	77	147675766	pspB	VC0395_A1282	-	phage shock protein B
1252	 47.38	0	1364247..1364915	-	222	147673382	pspA	VC0395_A1283	-	phage shock protein A
1253	 50.25	0	1365125..1366141	+	338	147674452	pspF	VC0395_A1284	-	psp operon transcriptional activator
1254	 49.11	0	1366255..1367877	+	540	147674011	sapA	VC0395_A1285	-	peptide ABC transporter, periplasmic peptide-binding protein
1255	 48.08	0	1367877..1368839	+	320	147673317	sapB	VC0395_A1286	-	peptide ABC transporter, permease protein
1256	 48.54	0	1368826..1369713	+	295	147674762	sapC	VC0395_A1287	-	peptide ABC transporter, permease protein
1257	 50.10	0	1369713..1370708	+	331	147674310	sapD	VC0395_A1288	-	peptide ABC transporter, ATP-binding protein
1258	 49.56	0	1370705..1371493	+	262	147673574	sapF	VC0395_A1289	-	peptide ABC transporter, ATP-binding protein
1259	 49.94	0	1371494..1372264	+	256	147675690	-	VC0395_A1290	-	hypothetical protein
1260	 46.49	0	1372282..1372836	-	184	147674406	-	VC0395_A1291	-	hypothetical protein
1261	 47.79	0	1372806..1373711	-	301	147673963	-	VC0395_A1292	-	putative manganese-dependent inorganic pyrophosphatase
1262	 50.46	0	1373921..1375105	+	394	147673366	-	VC0395_A1293	-	hypothetical protein
1263	 41.12	-1	1375169..1375900	+	243	147673958	-	VC0395_A1294	-	hypothetical protein
1264	 50.83	0	1375904..1377640	-	578	147673686	-	VC0395_A1295	-	putative alpha-1,6-galactosidase
1265	 51.28	0	1377839..1380301	-	820	147675496	torA	VC0395_A1296	-	trimethylamine-N-oxide reductase
1266	 49.54	0	1380325..1381509	-	394	147674416	torC	VC0395_A1297	-	cytochrome c-type protein TorC
1267	 45.21	0	1381556..1381774	-	72	147674351	torE	VC0395_A1298	-	trimethylamine N-oxide reductase system, TorE protein
1268	 45.94	0	1382418..1383329	-	303	147673760	-	VC0395_A1299	-	putative formate transporter 1
1269	 47.77	0	1383465..1383845	+	126	147673140	-	VC0395_A1300	-	hypothetical protein
1270	 49.34	0	1383949..1384779	+	276	147675295	-	VC0395_A1301	-	hypothetical protein
1271	 47.53	0	1384772..1385419	+	215	147674691	-	VC0395_A1302	-	hypothetical protein
1272	 45.19	0	1385572..1385841	+	89	147673883	-	VC0395_A1303	-	hypothetical protein
1273	 45.97	0	1386074..1386619	+	181	147674793	yciB	VC0395_A1304	-	intracellular septation protein A
1274	 48.53	0	1386758..1387198	+	146	147675608	-	VC0395_A1305	-	hypothetical protein
1275	 50.17	0	1387273..1387569	+	98	147673552	-	VC0395_A1306	-	YciI-like protein
1276	 49.59	0	1387478..1387969	+	163	147674926	-	VC0395_A1307	-	hypothetical protein
1277	 50.26	0	1388244..1390529	-	761	147675183	metE	VC0395_A1308	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
1278	 51.85	+1	1390800..1391717	+	305	147673038	metR	VC0395_A1309	-	transcriptional activator MetR
1279	 44.12	0	1391724..1391927	-	67	147673780	-	VC0395_A1310	-	hypothetical protein
1280	 49.49	0	1392041..1392727	-	228	147674536	-	VC0395_A1311	-	hypothetical protein
1281	 48.00	0	1392951..1395719	+	922	147675340	-	VC0395_A1312	-	zinc protease
1282	 47.78	0	1395853..1398309	-	818	147675480	-	VC0395_A1313	-	hypothetical protein
1283	 51.65	0	1398589..1400958	+	789	147674763	-	VC0395_A1314	-	hypothetical protein
1284	 48.29	0	1401074..1401688	-	204	147673222	-	VC0395_A1315	-	hypothetical protein
1285	 45.65	0	1401876..1402208	+	110	147673992	-	VC0395_A1316	-	AsnC family transcriptional regulator
1286	 51.97	+1	1402290..1406765	-	1491	147674404	mukB	VC0395_A1317	-	cell division protein MukB
1287	 52.16	+1	1406762..1407457	-	231	147675372	mukE	VC0395_A1318	-	condesin subunit E
1288	 50.45	0	1407465..1408802	-	445	147675329	mukF	VC0395_A1319	-	condesin subunit F
47.83	MEAN

3.88	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.