version 1.0
Vibrio cholerae O395 chromosome 2, complete sequence - 1..3024069 2742 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1183 48.65 0 1277648..1278796 + 382 147674169 - VC0395_A1214 - hypothetical protein 1184 47.78 0 1278800..1279249 - 149 147674760 - VC0395_A1215 - hypothetical protein 1185 48.75 0 1279297..1280256 + 319 147675666 metA VC0395_A1216 - homoserine O-succinyltransferase 1186 45.80 0 1280465..1281178 + 237 147675083 - VC0395_A1217 - putative fimbrial biogenesis and twitching motility protein 1187 44.00 0 1281182..1281406 - 74 147675636 - VC0395_A1218 - hypothetical protein 1188 45.50 0 1281479..1281700 - 73 147673215 - VC0395_A1219 - methyltransferase 1189 39.04 -2 1281773..1282210 - 145 147675585 tnpA VC0395_A1220 - IS1004 transposase 1190 47.65 0 1282254..1283189 - 311 147675312 - VC0395_A1221 - putative SAM-dependent methyltransferase 1191 43.27 -1 1283186..1283698 - 170 147673336 - VC0395_A1222 - hypothetical protein 1192 44.44 0 1283866..1284099 + 77 147673861 - VC0395_A1223 - putative glutaredoxin 1193 45.29 0 1284129..1284998 - 289 147674340 - VC0395_A1224 - LysR family transcriptional regulator 1194 49.43 0 1285104..1286321 + 405 147675274 - VC0395_A1225 - putative multidrug resistance protein 1195 44.63 0 1286378..1286926 + 182 147675553 - VC0395_A1226 - hypothetical protein 1196 48.64 0 1287036..1293791 - 2251 147675379 - VC0395_A1227 - cadherin domain-containing protein 1197 46.26 0 1294188..1295525 + 445 147674567 - VC0395_A1228 - agglutination protein 1198 46.64 0 1295527..1296165 + 212 147673877 - VC0395_A1229 - putative outer membrane protein 1199 45.79 0 1296301..1297464 - 387 147673110 nspC VC0395_A1230 - carboxynorspermidine decarboxylase 1200 47.79 0 1297700..1298944 - 414 147675770 - VC0395_A1231 - hypothetical protein 1201 49.51 0 1298958..1301843 - 961 147674813 - VC0395_A1232 - aminotransferase, class III/decarboxylase, group II 1202 47.43 0 1302441..1303589 - 382 147674219 nhaA VC0395_A1233 - pH-dependent sodium/proton antiporter 1203 49.24 0 1303868..1304986 - 372 147674640 - VC0395_A1234 - hypothetical protein 1204 48.43 0 1304987..1307497 - 836 147674224 - VC0395_A1235 - hypothetical protein 1205 49.85 0 1307421..1308104 - 227 147673170 - VC0395_A1236 - ABC transporter, ATP-binding protein 1206 50.54 0 1308218..1309594 - 458 147673464 - VC0395_A1237 - hypothetical protein 1207 51.43 0 1309722..1311158 + 478 147675522 - VC0395_A1238 - hypothetical protein 1208 46.52 0 1311262..1311921 - 219 147675444 - VC0395_A1239 - hypothetical protein 1209 50.91 0 1311921..1313126 - 401 147674586 - VC0395_A1240 - bicyclomycin/multidrug efflux system 1210 47.70 0 1313445..1314140 - 231 147673094 - VC0395_A1241 - ribosomal small subunit pseudouridine synthase A 1211 51.22 0 1314085..1316058 + 657 147675688 - VC0395_A1242 - DEAD-box ATP dependent DNA helicase 1212 46.32 0 1316323..1316730 + 135 147674733 - VC0395_A1243 - hypothetical protein 1213 49.39 0 1316742..1317401 + 219 147675175 - VC0395_A1244 - DNA-binding response regulator 1214 49.39 0 1317376..1318764 + 462 147674624 - VC0395_A1245 - sensor histidine kinase 1215 48.03 0 1318922..1319200 + 92 147673862 rplY VC0395_A1246 - 50S ribosomal protein L25 1216 38.50 -2 1319350..1320123 - 257 147673935 - VC0395_A1247 - hypothetical protein 1217 48.01 0 1320215..1320616 - 133 147673091 - VC0395_A1248 - hypothetical protein 1218 47.29 0 1320807..1322597 + 596 147675407 - VC0395_A1249 - methyl-accepting chemotaxis protein 1219 47.71 0 1322929..1324173 + 414 147674596 - VC0395_A1250 - hypothetical protein 1220 45.81 0 1324290..1324898 - 202 147674141 - VC0395_A1251 - HAD family phosphatase 1221 46.08 0 1325069..1325272 - 67 147673416 - VC0395_A1252 - hypothetical protein 1222 48.43 0 1325313..1327226 + 637 147675106 - VC0395_A1253 - hypothetical protein 1223 42.50 -1 1327307..1328953 - 548 147673259 - VC0395_A1254 - putative trypsin 1224 48.09 0 1329281..1330039 + 252 147675491 vcc VC0395_A1255 - collagenase 1225 48.21 0 1330081..1331700 + 539 147675061 - VC0395_A1256 - collagenase 1226 44.95 0 1331734..1333395 - 553 147675675 vieB VC0395_A1257 - response regulator VieB 1227 46.84 0 1333407..1335161 - 584 147675130 vieA VC0395_A1258 - response regulator VieA 1228 43.53 -1 1335166..1338606 - 1146 147674544 vieS VC0395_A1259 - sensory box sensor histidine kinase/response regulator VieS 1229 49.93 0 1339397..1340752 + 451 147673853 mgtE-1 VC0395_A1260 - magnesium transporter 1230 48.38 0 1340835..1341698 - 287 147675291 - VC0395_A1261 - hypothetical protein 1231 48.09 0 1342035..1343288 + 417 147674660 sdaC-2 VC0395_A1262 - serine transporter 1232 51.69 0 1343457..1344404 + 315 147674063 - VC0395_A1263 - hypothetical protein 1233 48.98 0 1344414..1345340 + 308 147674145 - VC0395_A1264 - putative ABC transporter, ATP-binding protein 1234 47.54 0 1345337..1346434 + 365 147675256 - VC0395_A1265 - ABC-type multidrug transport system, permease component 1235 44.59 0 1346593..1346814 + 73 147673052 - VC0395_A1266 - hypothetical protein 1236 48.69 0 1346820..1347086 - 88 147673854 - VC0395_A1267 - hypothetical protein 1237 47.07 0 1347233..1347676 + 147 147674423 hslJ VC0395_A1268 - heat shock protein HslJ 1238 49.17 0 1347884..1349032 + 382 147675331 - VC0395_A1269 - hypothetical protein 1239 50.03 0 1349046..1350746 + 566 147673944 - VC0395_A1270 - putative ABC transporter, permease protein 1240 48.42 0 1350712..1351374 + 220 147674206 - VC0395_A1271 - putative ABC transporter, ATP-binding protein 1241 48.95 0 1351367..1351987 + 206 147674766 - VC0395_A1272 - hypothetical protein 1242 47.88 0 1352046..1352753 - 235 147675726 - VC0395_A1273 - pseudouridine synthase Rlu family protein 1243 47.22 0 1352861..1354207 - 448 147674860 - VC0395_A1274 - putative sodium-dependent transporter 1244 48.93 0 1354763..1356217 + 484 147675655 cls VC0395_A1275 - cardiolipin synthetase 1245 50.46 0 1356298..1357488 + 396 147673284 metC VC0395_A1276 - cystathionine beta-lyase 1246 48.28 0 1357575..1358156 - 193 147674071 tag VC0395_A1277 - DNA-3-methyladenine glycosidase I 1247 49.73 0 1358243..1361341 - 1032 147674680 - VC0395_A1278 - AcrB/AcrD/AcrF family transporter 1248 49.26 0 1361334..1362413 - 359 147675113 - VC0395_A1279 - HlyD family secretion protein 1249 50.78 0 1362415..1363446 - 343 147673434 - VC0395_A1280 - putative multidrug resistance protein 1250 52.56 +1 1363618..1364007 - 129 147673938 pspC VC0395_A1281 - phage shock protein C 1251 49.15 0 1364000..1364233 - 77 147675766 pspB VC0395_A1282 - phage shock protein B 1252 47.38 0 1364247..1364915 - 222 147673382 pspA VC0395_A1283 - phage shock protein A 1253 50.25 0 1365125..1366141 + 338 147674452 pspF VC0395_A1284 - psp operon transcriptional activator 1254 49.11 0 1366255..1367877 + 540 147674011 sapA VC0395_A1285 - peptide ABC transporter, periplasmic peptide-binding protein 1255 48.08 0 1367877..1368839 + 320 147673317 sapB VC0395_A1286 - peptide ABC transporter, permease protein 1256 48.54 0 1368826..1369713 + 295 147674762 sapC VC0395_A1287 - peptide ABC transporter, permease protein 1257 50.10 0 1369713..1370708 + 331 147674310 sapD VC0395_A1288 - peptide ABC transporter, ATP-binding protein 1258 49.56 0 1370705..1371493 + 262 147673574 sapF VC0395_A1289 - peptide ABC transporter, ATP-binding protein 1259 49.94 0 1371494..1372264 + 256 147675690 - VC0395_A1290 - hypothetical protein 1260 46.49 0 1372282..1372836 - 184 147674406 - VC0395_A1291 - hypothetical protein 1261 47.79 0 1372806..1373711 - 301 147673963 - VC0395_A1292 - putative manganese-dependent inorganic pyrophosphatase 1262 50.46 0 1373921..1375105 + 394 147673366 - VC0395_A1293 - hypothetical protein 1263 41.12 -1 1375169..1375900 + 243 147673958 - VC0395_A1294 - hypothetical protein 1264 50.83 0 1375904..1377640 - 578 147673686 - VC0395_A1295 - putative alpha-1,6-galactosidase 1265 51.28 0 1377839..1380301 - 820 147675496 torA VC0395_A1296 - trimethylamine-N-oxide reductase 1266 49.54 0 1380325..1381509 - 394 147674416 torC VC0395_A1297 - cytochrome c-type protein TorC 1267 45.21 0 1381556..1381774 - 72 147674351 torE VC0395_A1298 - trimethylamine N-oxide reductase system, TorE protein 1268 45.94 0 1382418..1383329 - 303 147673760 - VC0395_A1299 - putative formate transporter 1 1269 47.77 0 1383465..1383845 + 126 147673140 - VC0395_A1300 - hypothetical protein 1270 49.34 0 1383949..1384779 + 276 147675295 - VC0395_A1301 - hypothetical protein 1271 47.53 0 1384772..1385419 + 215 147674691 - VC0395_A1302 - hypothetical protein 1272 45.19 0 1385572..1385841 + 89 147673883 - VC0395_A1303 - hypothetical protein 1273 45.97 0 1386074..1386619 + 181 147674793 yciB VC0395_A1304 - intracellular septation protein A 1274 48.53 0 1386758..1387198 + 146 147675608 - VC0395_A1305 - hypothetical protein 1275 50.17 0 1387273..1387569 + 98 147673552 - VC0395_A1306 - YciI-like protein 1276 49.59 0 1387478..1387969 + 163 147674926 - VC0395_A1307 - hypothetical protein 1277 50.26 0 1388244..1390529 - 761 147675183 metE VC0395_A1308 - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1278 51.85 +1 1390800..1391717 + 305 147673038 metR VC0395_A1309 - transcriptional activator MetR 1279 44.12 0 1391724..1391927 - 67 147673780 - VC0395_A1310 - hypothetical protein 1280 49.49 0 1392041..1392727 - 228 147674536 - VC0395_A1311 - hypothetical protein 1281 48.00 0 1392951..1395719 + 922 147675340 - VC0395_A1312 - zinc protease 1282 47.78 0 1395853..1398309 - 818 147675480 - VC0395_A1313 - hypothetical protein 47.83 MEAN 3.88 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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