version 1.0
Vibrio cholerae O395 chromosome 2, complete sequence - 1..3024069 2742 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1147 44.62 0 1237824..1238204 + 126 147675203 - VC0395_A1176 - hypothetical protein 1148 52.09 +1 1238220..1239605 + 461 147674412 fumC VC0395_A1177 - fumarate hydratase 1149 44.27 0 1239736..1240119 - 127 147673036 - VC0395_A1178 - hypothetical protein 1150 45.97 0 1240164..1240622 - 152 147675386 - VC0395_A1179 - hypothetical protein 1151 45.22 0 1240625..1240969 - 114 147674593 - VC0395_A1180 - hypothetical protein 1152 46.84 0 1241125..1241946 - 273 147674196 - VC0395_A1181 - hypothetical protein 1153 45.84 0 1242119..1243789 - 556 147674686 - VC0395_A1182 - enterobactin synthetase component F-related protein 1154 48.57 0 1243853..1244764 - 303 147675267 - VC0395_A1183 - LysR family transcriptional regulator 1155 52.74 +1 1244844..1246394 + 516 147673508 - VC0395_A1184 - NADH dehydrogenase subunit L 1156 54.04 +1 1246319..1248907 + 862 147674092 - VC0395_A1185 - hypothetical protein 1157 50.78 0 1248952..1249467 - 171 147674669 sodC VC0395_A1186 - superoxide dismutase, Cu-Zn 1158 46.91 0 1249507..1250073 - 188 147675624 - VC0395_A1187 - ankyrin repeat-containing protein 1159 45.07 0 1250137..1251840 - 567 147673445 katB VC0395_A1188 - catalase 1160 40.14 -1 1252094..1252534 + 146 147674362 - VC0395_A1189 - hypothetical protein 1161 48.58 0 1252723..1253601 - 292 147674953 - VC0395_A1190 - LysR family transcriptional regulator 1162 48.47 0 1253710..1254495 + 261 147674500 aldC VC0395_A1191 - alpha-acetolactate decarboxylase 1163 51.82 +1 1254634..1256337 + 567 147673632 alsS VC0395_A1192 - acetolactate synthase 1164 52.17 +1 1256334..1257092 + 252 147673245 - VC0395_A1193 - short chain dehydrogenase/reductase family oxidoreductase 1165 45.73 0 1257330..1258184 + 284 147674015 - VC0395_A1194 - hypothetical protein 1166 42.79 -1 1258267..1259556 + 429 147675021 - VC0395_A1195 - GGDEF family protein 1167 51.38 0 1259574..1260626 - 350 147675555 galM VC0395_A1196 - aldose 1-epimerase 1168 51.97 +1 1260635..1261852 - 405 147673567 galK VC0395_A1197 - galactokinase 1169 49.33 0 1261861..1262979 - 372 147674295 galT VC0395_A1198 - galactose-1-phosphate uridylyltransferase 1170 49.02 0 1263369..1264802 - 477 147674445 - VC0395_A1199 - putative multidrug transporter 1171 45.45 0 1264951..1265775 + 274 147675228 - VC0395_A1200 - hypothetical protein 1172 42.72 -1 1266481..1266885 + 134 147673247 - VC0395_A1203 - GGDEF family protein 1173 42.52 -1 1266860..1267447 + 195 147673926 - VC0395_A1204 - GGDEF family protein 1174 42.75 -1 1267450..1268139 - 229 147674541 - VC0395_A1205 - hypothetical protein 1175 44.28 0 1268254..1269057 - 267 147675133 - VC0395_A1206 - hypothetical protein 1176 45.19 0 1269189..1270175 - 328 147674998 cheV-1 VC0395_A1207 - chemotaxis protein CheV 1177 43.50 -1 1270194..1270970 - 258 147675751 - VC0395_A1208 - hypothetical protein 1178 49.20 0 1271036..1271722 - 228 147673209 - VC0395_A1209 - response regulator 1179 48.55 0 1271722..1273338 - 538 147673767 - VC0395_A1210 - putative sensor kinase citA 1180 47.73 0 1274068..1275498 + 476 147674749 - VC0395_A1211 - hypothetical protein 1181 51.08 0 1275510..1276484 + 324 147675362 - VC0395_A1212 - hypothetical protein 1182 49.66 0 1276488..1277651 + 387 147674232 - VC0395_A1213 - hypothetical protein 1183 48.65 0 1277648..1278796 + 382 147674169 - VC0395_A1214 - hypothetical protein 1184 47.78 0 1278800..1279249 - 149 147674760 - VC0395_A1215 - hypothetical protein 1185 48.75 0 1279297..1280256 + 319 147675666 metA VC0395_A1216 - homoserine O-succinyltransferase 1186 45.80 0 1280465..1281178 + 237 147675083 - VC0395_A1217 - putative fimbrial biogenesis and twitching motility protein 1187 44.00 0 1281182..1281406 - 74 147675636 - VC0395_A1218 - hypothetical protein 1188 45.50 0 1281479..1281700 - 73 147673215 - VC0395_A1219 - methyltransferase 1189 39.04 -2 1281773..1282210 - 145 147675585 tnpA VC0395_A1220 - IS1004 transposase 1190 47.65 0 1282254..1283189 - 311 147675312 - VC0395_A1221 - putative SAM-dependent methyltransferase 1191 43.27 -1 1283186..1283698 - 170 147673336 - VC0395_A1222 - hypothetical protein 1192 44.44 0 1283866..1284099 + 77 147673861 - VC0395_A1223 - putative glutaredoxin 1193 45.29 0 1284129..1284998 - 289 147674340 - VC0395_A1224 - LysR family transcriptional regulator 1194 49.43 0 1285104..1286321 + 405 147675274 - VC0395_A1225 - putative multidrug resistance protein 1195 44.63 0 1286378..1286926 + 182 147675553 - VC0395_A1226 - hypothetical protein 1196 48.64 0 1287036..1293791 - 2251 147675379 - VC0395_A1227 - cadherin domain-containing protein 1197 46.26 0 1294188..1295525 + 445 147674567 - VC0395_A1228 - agglutination protein 1198 46.64 0 1295527..1296165 + 212 147673877 - VC0395_A1229 - putative outer membrane protein 1199 45.79 0 1296301..1297464 - 387 147673110 nspC VC0395_A1230 - carboxynorspermidine decarboxylase 1200 47.79 0 1297700..1298944 - 414 147675770 - VC0395_A1231 - hypothetical protein 1201 49.51 0 1298958..1301843 - 961 147674813 - VC0395_A1232 - aminotransferase, class III/decarboxylase, group II 1202 47.43 0 1302441..1303589 - 382 147674219 nhaA VC0395_A1233 - pH-dependent sodium/proton antiporter 1203 49.24 0 1303868..1304986 - 372 147674640 - VC0395_A1234 - hypothetical protein 1204 48.43 0 1304987..1307497 - 836 147674224 - VC0395_A1235 - hypothetical protein 1205 49.85 0 1307421..1308104 - 227 147673170 - VC0395_A1236 - ABC transporter, ATP-binding protein 1206 50.54 0 1308218..1309594 - 458 147673464 - VC0395_A1237 - hypothetical protein 1207 51.43 0 1309722..1311158 + 478 147675522 - VC0395_A1238 - hypothetical protein 1208 46.52 0 1311262..1311921 - 219 147675444 - VC0395_A1239 - hypothetical protein 1209 50.91 0 1311921..1313126 - 401 147674586 - VC0395_A1240 - bicyclomycin/multidrug efflux system 1210 47.70 0 1313445..1314140 - 231 147673094 - VC0395_A1241 - ribosomal small subunit pseudouridine synthase A 1211 51.22 0 1314085..1316058 + 657 147675688 - VC0395_A1242 - DEAD-box ATP dependent DNA helicase 1212 46.32 0 1316323..1316730 + 135 147674733 - VC0395_A1243 - hypothetical protein 1213 49.39 0 1316742..1317401 + 219 147675175 - VC0395_A1244 - DNA-binding response regulator 1214 49.39 0 1317376..1318764 + 462 147674624 - VC0395_A1245 - sensor histidine kinase 1215 48.03 0 1318922..1319200 + 92 147673862 rplY VC0395_A1246 - 50S ribosomal protein L25 1216 38.50 -2 1319350..1320123 - 257 147673935 - VC0395_A1247 - hypothetical protein 1217 48.01 0 1320215..1320616 - 133 147673091 - VC0395_A1248 - hypothetical protein 1218 47.29 0 1320807..1322597 + 596 147675407 - VC0395_A1249 - methyl-accepting chemotaxis protein 1219 47.71 0 1322929..1324173 + 414 147674596 - VC0395_A1250 - hypothetical protein 1220 45.81 0 1324290..1324898 - 202 147674141 - VC0395_A1251 - HAD family phosphatase 1221 46.08 0 1325069..1325272 - 67 147673416 - VC0395_A1252 - hypothetical protein 1222 48.43 0 1325313..1327226 + 637 147675106 - VC0395_A1253 - hypothetical protein 1223 42.50 -1 1327307..1328953 - 548 147673259 - VC0395_A1254 - putative trypsin 1224 48.09 0 1329281..1330039 + 252 147675491 vcc VC0395_A1255 - collagenase 1225 48.21 0 1330081..1331700 + 539 147675061 - VC0395_A1256 - collagenase 1226 44.95 0 1331734..1333395 - 553 147675675 vieB VC0395_A1257 - response regulator VieB 1227 46.84 0 1333407..1335161 - 584 147675130 vieA VC0395_A1258 - response regulator VieA 1228 43.53 -1 1335166..1338606 - 1146 147674544 vieS VC0395_A1259 - sensory box sensor histidine kinase/response regulator VieS 1229 49.93 0 1339397..1340752 + 451 147673853 mgtE-1 VC0395_A1260 - magnesium transporter 1230 48.38 0 1340835..1341698 - 287 147675291 - VC0395_A1261 - hypothetical protein 1231 48.09 0 1342035..1343288 + 417 147674660 sdaC-2 VC0395_A1262 - serine transporter 1232 51.69 0 1343457..1344404 + 315 147674063 - VC0395_A1263 - hypothetical protein 1233 48.98 0 1344414..1345340 + 308 147674145 - VC0395_A1264 - putative ABC transporter, ATP-binding protein 1234 47.54 0 1345337..1346434 + 365 147675256 - VC0395_A1265 - ABC-type multidrug transport system, permease component 1235 44.59 0 1346593..1346814 + 73 147673052 - VC0395_A1266 - hypothetical protein 1236 48.69 0 1346820..1347086 - 88 147673854 - VC0395_A1267 - hypothetical protein 1237 47.07 0 1347233..1347676 + 147 147674423 hslJ VC0395_A1268 - heat shock protein HslJ 1238 49.17 0 1347884..1349032 + 382 147675331 - VC0395_A1269 - hypothetical protein 1239 50.03 0 1349046..1350746 + 566 147673944 - VC0395_A1270 - putative ABC transporter, permease protein 1240 48.42 0 1350712..1351374 + 220 147674206 - VC0395_A1271 - putative ABC transporter, ATP-binding protein 1241 48.95 0 1351367..1351987 + 206 147674766 - VC0395_A1272 - hypothetical protein 1242 47.88 0 1352046..1352753 - 235 147675726 - VC0395_A1273 - pseudouridine synthase Rlu family protein 1243 47.22 0 1352861..1354207 - 448 147674860 - VC0395_A1274 - putative sodium-dependent transporter 1244 48.93 0 1354763..1356217 + 484 147675655 cls VC0395_A1275 - cardiolipin synthetase 1245 50.46 0 1356298..1357488 + 396 147673284 metC VC0395_A1276 - cystathionine beta-lyase 1246 48.28 0 1357575..1358156 - 193 147674071 tag VC0395_A1277 - DNA-3-methyladenine glycosidase I 47.83 MEAN 3.88 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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