version 1.0
Vibrio cholerae O395 chromosome 2, complete sequence - 1..3024069 2742 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 998 42.86 -1 1072169..1073029 + 286 147674556 - VC0395_A1027 - hypothetical protein 999 39.30 -2 1073032..1074957 + 641 147673623 - VC0395_A1028 - hypothetical protein 1000 34.68 -2 1074954..1075697 + 247 147673058 - VC0395_A1029 - hypothetical protein 1001 40.11 -1 1075842..1076579 + 245 147675173 - VC0395_A1030 - hypothetical protein 1002 44.76 0 1076667..1077305 + 212 147674879 - VC0395_A1031 - hypothetical protein 1003 49.82 0 1077378..1078748 - 456 147673881 - VC0395_A1032 - sodium/alanine symporter 1004 42.14 -1 1079251..1079409 + 52 147675022 - VC0395_A1033 - hypothetical protein 1005 42.99 -1 1079426..1080160 + 244 147675669 - VC0395_A1034 - hypothetical protein 1006 45.09 0 1080309..1081346 - 345 147673534 potD-1 VC0395_A1035 - spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein 1007 45.14 0 1081457..1082557 - 366 147674149 potD-2 VC0395_A1036 - spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein 1008 44.75 0 1082591..1083361 - 256 147673527 potC VC0395_A1037 - spermidine/putrescine ABC transporter membrane protein 1009 44.60 0 1083361..1084221 - 286 147675686 potB VC0395_A1038 - spermidine/putrescine ABC transporter membrane protein 1010 44.89 0 1084202..1085335 - 377 147673678 potA VC0395_A1039 - putrescine/spermidine ABC transporter ATPase protein 1011 43.14 -1 1085621..1086466 + 281 147673798 - VC0395_A1040 - hypothetical protein 1012 42.91 -1 1086456..1087259 + 267 147674546 - VC0395_A1041 - putative bax protein 1013 43.64 -1 1087261..1087920 + 219 147675006 - VC0395_A1042 - hypothetical protein 1014 43.62 -1 1087996..1088928 - 310 147674407 - VC0395_A1043 - hypothetical protein 1015 46.52 0 1089055..1090002 - 315 147675194 - VC0395_A1044 - universal stress protein UspE 1016 43.69 -1 1090132..1090884 - 250 147674177 fnr VC0395_A1045 - fumarate/nitrate reduction transcriptional regulator 1017 49.48 0 1090974..1091648 - 224 147673967 - VC0395_A1046 - hypothetical protein 1018 41.82 -1 1091645..1091809 - 54 147673519 ccoS VC0395_A1047 - cytochrome oxidase maturation protein, cbb3-type 1019 46.78 0 1091813..1094185 - 790 147674112 - VC0395_A1048 - cation transporter E1-E2 family ATPase 1020 42.98 -1 1094190..1094666 - 158 147674935 - VC0395_A1049 - hypothetical protein 1021 45.67 0 1094745..1095725 - 326 147675355 ccoP VC0395_A1050 - cytochrome c oxidase, subunit CcoP 1022 43.64 -1 1095733..1095897 - 54 147675405 ccoQ VC0395_A1051 - cytochrome c oxidase, cbb3-type, CcoQ subunit 1023 44.61 0 1095909..1096529 - 206 147673108 ccoO VC0395_A1052 - cytochrome c oxidase, subunit CcoO 1024 47.70 0 1096543..1097976 - 477 147673393 ccoN VC0395_A1053 - cytochrome c oxidase, subunit CcoN 1025 42.78 -1 1098654..1099871 + 405 147674313 - VC0395_A1054 - hypothetical protein 1026 39.42 -2 1100035..1101579 + 514 147674610 - VC0395_A1055 - sensor histidine kinase/response regulator 1027 49.54 0 1101640..1103799 - 719 147675517 - VC0395_A1056 - putative toxin secretion transporter 1028 50.36 0 1103802..1105205 - 467 147674597 rtxD VC0395_A1057 - RTX toxin transporter 1029 49.05 0 1105160..1106266 - 368 147675369 - VC0395_A1058 - RtxB protein 1030 47.21 0 1106372..1114318 + 2648 147673063 - VC0395_A1059 - RTX protein 1031 38.48 -2 1115147..1115923 - 258 147673805 ctxA VC0395_A1060 - cholera enterotoxin, A subunit 1032 49.25 0 1116043..1117242 - 399 147674144 zot VC0395_A1061 - zona occludens toxin 1033 45.24 0 1117239..1117532 - 97 147675552 ace VC0395_A1062 - accessory cholera enterotoxin 1034 48.05 0 1117529..1118812 - 427 147673104 - VC0395_A1063 - hypothetical protein 1035 46.59 0 1118823..1119071 - 82 147673551 cep VC0395_A1064 - colonization factor 1036 45.14 0 1119207..1119587 - 126 147674635 rstB2 VC0395_A1065 - RstB2 protein 1037 45.37 0 1119565..1120644 - 359 147675447 rstA1 VC0395_A1066 - RstA1 protein 1038 34.52 -2 1120776..1121111 + 111 147673763 - VC0395_A1067 - cryptic phage CTXphi transcriptional repressor RstR 1039 45.14 0 1121353..1121733 - 126 147674737 rstB2 VC0395_A1068 - RstB2 protein 1040 45.37 0 1121711..1122790 - 359 147675657 rstA1 VC0395_A1069 - RstA1 protein 1041 34.52 -2 1122922..1123257 + 111 147673183 - VC0395_A1070 - cryptic phage CTXphi transcriptional repressor RstR 1042 54.90 +1 1123727..1123879 + 50 147675628 - VC0395_A1072 - hypothetical protein 1043 48.21 0 1123876..1124460 - 194 147673717 - VC0395_A1071 - hypothetical protein 1044 50.36 0 1124698..1125390 - 230 147675658 - VC0395_A1073 - hypothetical protein 1045 46.67 0 1125520..1125804 - 94 147674091 - VC0395_A1074 - hypothetical protein 1046 48.88 0 1125809..1127377 - 522 147673321 cri-1 VC0395_A1075 - plasmid replication protein Cri 1047 41.49 -1 1127554..1128105 + 183 147675271 tlcR-1 VC0395_A1076 - tlcR protein 1048 38.10 -2 1129144..1129311 - 55 147675604 - VC0395_A1077 - hypothetical protein 1049 50.36 0 1129549..1130241 - 230 147673262 - VC0395_A1078 - hypothetical protein 1050 46.67 0 1130371..1130655 - 94 147674025 - VC0395_A1079 - hypothetical protein 1051 48.88 0 1130660..1132228 - 522 147674442 cri-1 VC0395_A1080 - plasmid replication protein Cri 1052 41.49 -1 1132405..1132956 + 183 147674410 tlcR-1 VC0395_A1081 - tlcR protein 1053 38.10 -2 1133995..1134162 - 55 147674627 - VC0395_A1082 - hypothetical protein 1054 50.36 0 1134400..1135092 - 230 147674799 - VC0395_A1083 - hypothetical protein 1055 46.67 0 1135222..1135506 - 94 147674344 - VC0395_A1084 - hypothetical protein 1056 48.88 0 1135511..1137079 - 522 147673446 cri-1 VC0395_A1085 - plasmid replication protein Cri 1057 41.49 -1 1137256..1137807 + 183 147675257 tlcR-1 VC0395_A1086 - tlcR protein 1058 37.22 -2 1138977..1139336 - 119 147673241 - VC0395_A1087 - hypothetical protein 1059 43.54 -1 1139447..1139779 - 110 147673500 - VC0395_A1088 - hypothetical protein 1060 40.20 -1 1139784..1140293 - 169 147675509 - VC0395_A1089 - hypothetical protein 1061 43.91 -1 1140250..1142046 + 598 147675072 - VC0395_A1090 - hypothetical protein 1062 44.51 0 1142111..1142629 + 172 147674296 fabA VC0395_A1091 - 3-hydroxydecanoyl-(acyl carrier protein) dehydratase 1063 45.72 0 1143052..1144746 - 564 147675149 - VC0395_A1092 - hypothetical protein 1064 45.00 0 1144752..1146671 - 639 147673353 - VC0395_A1093 - ABC transporter ATPase component 1065 41.15 -1 1146649..1146891 - 80 147675151 - VC0395_A1094 - hypothetical protein 1066 46.26 0 1146900..1149026 - 708 147673350 - VC0395_A1095 - 23S rRNA m(2)G2445 methyltransferase 1067 35.61 -2 1148998..1149129 - 43 147673960 - VC0395_A1096 - hypothetical protein 1068 44.75 0 1149486..1150028 - 180 147674895 - VC0395_A1097 - hypothetical protein 1069 45.40 0 1150183..1151193 - 336 147675557 pyrD VC0395_A1098 - dihydroorotate dehydrogenase 2 1070 47.24 0 1151267..1155415 - 1382 147673706 - VC0395_A1099 - hypothetical protein 1071 44.89 0 1155512..1156108 - 198 147674485 - VC0395_A1100 - NAD-specific glutamate dehydrogenase 1072 38.82 -2 1156297..1156533 - 78 147675090 - VC0395_A1101 - hypothetical protein 1073 47.72 0 1156567..1159173 - 868 147673795 pepN VC0395_A1102 - aminopeptidase N 1074 43.24 -1 1159372..1160088 - 238 147675630 - VC0395_A1103 - hypothetical protein 1075 44.09 0 1160197..1162194 - 665 147673268 prc VC0395_A1104 - carboxy-terminal protease 1076 46.89 0 1162212..1162838 - 208 147674881 - VC0395_A1105 - putative solute/DNA competence effector 1077 43.70 -1 1162939..1163517 - 192 147674457 - VC0395_A1106 - hypothetical protein 1078 46.75 0 1163462..1165294 + 610 147674056 - VC0395_A1107 - ABC transporter, ATP-binding protein 1079 48.17 0 1165328..1166587 + 419 147675189 - VC0395_A1108 - hypothetical protein 1080 49.05 0 1166597..1169236 + 879 147674478 - VC0395_A1109 - hypothetical protein 1081 48.74 0 1169267..1170778 + 503 147674343 yebU VC0395_A1110 - rRNA (cytosine-C(5)-)-methyltransferase RsmF 1082 43.92 -1 1170960..1171856 - 298 147673626 - VC0395_A1111 - hypothetical protein 1083 46.59 0 1171895..1173244 + 449 147674673 - VC0395_A1113 - hypothetical protein 1084 47.80 0 1173237..1173713 - 158 147675310 - VC0395_A1112 - hypothetical protein 1085 48.06 0 1173863..1175050 + 395 147675263 aroH VC0395_A1114 - phospho-2-dehydro-3-deoxyheptonate aldolase 1086 47.00 0 1175062..1175544 + 160 147674648 - VC0395_A1115 - nucleotide-binding protein 1087 50.77 0 1175679..1176458 - 259 147673738 cobB VC0395_A1116 - NAD-dependent deacetylase 1088 47.99 0 1176556..1176978 - 140 147673164 - VC0395_A1117 - hypothetical protein 1089 49.53 0 1176965..1178038 - 357 147675698 fdnI VC0395_A1118 - formate dehydrogenase, cytochrome B556 subunit 1090 53.04 +1 1178039..1178647 - 202 147675071 fdhB VC0395_A1119 - formate dehydrogenase, iron-sulfur subunit 1091 51.33 0 1178659..1181514 - 951 147674130 - VC0395_A1120 - putative formate dehydrogenase, alpha subunit 1092 50.00 0 1181526..1181723 - 65 147673386 - VC0395_A1121 - hypothetical protein 1093 51.64 0 1181800..1182471 - 223 147674264 - VC0395_A1122 - putative chaperone, formate dehydrogenase-specific 1094 50.42 0 1182497..1184158 - 553 147673441 - VC0395_A1123 - iron-sulfur cluster-binding protein 1095 48.65 0 1184357..1185022 - 221 147673884 - VC0395_A1124 - hypothetical protein 1096 53.46 +1 1184949..1185425 - 158 147673044 - VC0395_A1125 - hypothetical protein 1097 48.92 0 1185470..1186483 + 337 147675414 fdhD VC0395_A1126 - formate dehydrogenase accessory protein 47.83 MEAN 3.88 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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