IslandPathversion 1.0

IslandPath Analysis: Vibrio cholerae O395



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.83 STD DEV: 3.88
Vibrio cholerae O395 chromosome 2, complete sequence - 1..3024069
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
965	 50.32	0	1030315..1030779	-	154	147673194	-	VC0395_A0994	-	hypothetical protein
966	 50.14	0	1030826..1031176	-	116	147675320	-	VC0395_A0995	-	hypothetical protein
967	 48.10	0	1031211..1031420	-	69	147674705	-	VC0395_A0996	-	hypothetical protein
968	 50.41	0	1031378..1035307	+	1309	147674840	hrpA	VC0395_A0997	-	ATP-dependent RNA helicase HrpA
969	 48.45	0	1035447..1035929	+	160	147675259	-	VC0395_A0998	-	hypothetical protein
970	 52.77	+1	1036146..1037498	+	450	147673298	-	VC0395_A0999	-	putative chaperone
971	 50.93	0	1037623..1038639	+	338	147673744	lplA	VC0395_A1000	-	lipoate-protein ligase A
972	 47.78	0	1038875..1039054	+	59	147674263	-	VC0395_A1002	-	hypothetical protein
973	 52.79	+1	1039032..1039982	-	316	147673870	-	VC0395_A1001	-	LysR family transcriptional regulator
974	 52.45	+1	1040069..1041475	+	468	147674152	-	VC0395_A1003	-	putative multidrug transporter
975	 53.14	+1	1041631..1043145	+	504	147673506	cry2	VC0395_A1004	-	cryptochrome Cry2
976	 48.89	0	1043291..1043605	+	104	147674676	sugE	VC0395_A1005	-	sugE protein
977	 42.72	-1	1043660..1044895	-	411	147673930	-	VC0395_A1006	-	methyl-accepting chemotaxis protein
978	 42.52	-1	1044903..1045283	-	126	147673810	cheY-1	VC0395_A1007	-	chemotaxis protein CheY
979	 43.04	-1	1045276..1045512	-	78	147673237	-	VC0395_A1008	-	hypothetical protein
980	 46.02	0	1045526..1047811	-	761	147675706	cheA-1	VC0395_A1009	-	chemotaxis protein CheA
981	 44.27	0	1047808..1048182	-	124	147674402	cheY-2	VC0395_A1010	-	chemotaxis protein CheY
982	 40.66	-1	1048179..1049024	-	281	147674925	cheR-1	VC0395_A1011	-	chemotaxis protein methyltransferase CheR
983	 45.21	0	1049035..1049691	-	218	147675588	-	VC0395_A1012	-	hypothetical protein
984	 48.38	0	1049678..1050754	-	358	147675091	cheB-1	VC0395_A1013	-	protein-glutamate methylesterase CheB
985	 45.04	0	1050775..1052337	-	520	147674323	-	VC0395_A1014	-	putative purine-binding chemotaxis protein CheW
986	 44.86	0	1052350..1054275	-	641	147673937	-	VC0395_A1015	-	methyl-accepting chemotaxis protein
987	 44.92	0	1054867..1056558	+	563	147673332	-	VC0395_A1016	-	methyl-accepting chemotaxis protein
988	 44.50	0	1056637..1057953	+	438	147675551	-	VC0395_A1017	-	methyl-accepting chemotaxis protein
989	 48.99	0	1058135..1059328	+	397	147674915	rhlE-1	VC0395_A1018	-	ATP-dependent RNA helicase RhlE
990	 43.95	-1	1059387..1059989	-	200	147674524	-	VC0395_A1019	-	TetR family transcriptional regulator
991	 48.87	0	1060096..1061550	+	484	147673563	-	VC0395_A1020	-	putative multidrug resistance protein
992	 50.42	0	1061564..1062751	+	395	147673357	vceA	VC0395_A1021	-	multidrug resistance protein VceA
993	 47.01	0	1062761..1064296	+	511	147673125	vceB	VC0395_A1022	-	multidrug resistance protein VceB
994	 44.67	0	1064371..1066107	-	578	147675234	-	VC0395_A1023	-	methyl-accepting chemotaxis protein
995	 48.19	0	1066329..1067903	-	524	147674997	-	VC0395_A1024	-	thermostable carboxypeptidase 1
996	 49.71	0	1068101..1068619	+	172	147674396	hcp-2	VC0395_A1025	-	hcp protein
997	 49.85	0	1068747..1072034	+	1095	147673444	vgrG-1	VC0395_A1026	-	vgrG protein
998	 42.86	-1	1072169..1073029	+	286	147674556	-	VC0395_A1027	-	hypothetical protein
999	 39.30	-2	1073032..1074957	+	641	147673623	-	VC0395_A1028	-	hypothetical protein
1000	 34.68	-2	1074954..1075697	+	247	147673058	-	VC0395_A1029	-	hypothetical protein
1001	 40.11	-1	1075842..1076579	+	245	147675173	-	VC0395_A1030	-	hypothetical protein
1002	 44.76	0	1076667..1077305	+	212	147674879	-	VC0395_A1031	-	hypothetical protein
1003	 49.82	0	1077378..1078748	-	456	147673881	-	VC0395_A1032	-	sodium/alanine symporter
1004	 42.14	-1	1079251..1079409	+	52	147675022	-	VC0395_A1033	-	hypothetical protein
1005	 42.99	-1	1079426..1080160	+	244	147675669	-	VC0395_A1034	-	hypothetical protein
1006	 45.09	0	1080309..1081346	-	345	147673534	potD-1	VC0395_A1035	-	spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein
1007	 45.14	0	1081457..1082557	-	366	147674149	potD-2	VC0395_A1036	-	spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein
1008	 44.75	0	1082591..1083361	-	256	147673527	potC	VC0395_A1037	-	spermidine/putrescine ABC transporter membrane protein
1009	 44.60	0	1083361..1084221	-	286	147675686	potB	VC0395_A1038	-	spermidine/putrescine ABC transporter membrane protein
1010	 44.89	0	1084202..1085335	-	377	147673678	potA	VC0395_A1039	-	putrescine/spermidine ABC transporter ATPase protein
1011	 43.14	-1	1085621..1086466	+	281	147673798	-	VC0395_A1040	-	hypothetical protein
1012	 42.91	-1	1086456..1087259	+	267	147674546	-	VC0395_A1041	-	putative bax protein
1013	 43.64	-1	1087261..1087920	+	219	147675006	-	VC0395_A1042	-	hypothetical protein
1014	 43.62	-1	1087996..1088928	-	310	147674407	-	VC0395_A1043	-	hypothetical protein
1015	 46.52	0	1089055..1090002	-	315	147675194	-	VC0395_A1044	-	universal stress protein UspE
1016	 43.69	-1	1090132..1090884	-	250	147674177	fnr	VC0395_A1045	-	fumarate/nitrate reduction transcriptional regulator
1017	 49.48	0	1090974..1091648	-	224	147673967	-	VC0395_A1046	-	hypothetical protein
1018	 41.82	-1	1091645..1091809	-	54	147673519	ccoS	VC0395_A1047	-	cytochrome oxidase maturation protein, cbb3-type
1019	 46.78	0	1091813..1094185	-	790	147674112	-	VC0395_A1048	-	cation transporter E1-E2 family ATPase
1020	 42.98	-1	1094190..1094666	-	158	147674935	-	VC0395_A1049	-	hypothetical protein
1021	 45.67	0	1094745..1095725	-	326	147675355	ccoP	VC0395_A1050	-	cytochrome c oxidase, subunit CcoP
1022	 43.64	-1	1095733..1095897	-	54	147675405	ccoQ	VC0395_A1051	-	cytochrome c oxidase, cbb3-type, CcoQ subunit
1023	 44.61	0	1095909..1096529	-	206	147673108	ccoO	VC0395_A1052	-	cytochrome c oxidase, subunit CcoO
1024	 47.70	0	1096543..1097976	-	477	147673393	ccoN	VC0395_A1053	-	cytochrome c oxidase, subunit CcoN
1025	 42.78	-1	1098654..1099871	+	405	147674313	-	VC0395_A1054	-	hypothetical protein
1026	 39.42	-2	1100035..1101579	+	514	147674610	-	VC0395_A1055	-	sensor histidine kinase/response regulator
1027	 49.54	0	1101640..1103799	-	719	147675517	-	VC0395_A1056	-	putative toxin secretion transporter
1028	 50.36	0	1103802..1105205	-	467	147674597	rtxD	VC0395_A1057	-	RTX toxin transporter
1029	 49.05	0	1105160..1106266	-	368	147675369	-	VC0395_A1058	-	RtxB protein
1030	 47.21	0	1106372..1114318	+	2648	147673063	-	VC0395_A1059	-	RTX protein
1031	 38.48	-2	1115147..1115923	-	258	147673805	ctxA	VC0395_A1060	-	cholera enterotoxin, A subunit
1032	 49.25	0	1116043..1117242	-	399	147674144	zot	VC0395_A1061	-	zona occludens toxin
1033	 45.24	0	1117239..1117532	-	97	147675552	ace	VC0395_A1062	-	accessory cholera enterotoxin
1034	 48.05	0	1117529..1118812	-	427	147673104	-	VC0395_A1063	-	hypothetical protein
1035	 46.59	0	1118823..1119071	-	82	147673551	cep	VC0395_A1064	-	colonization factor
1036	 45.14	0	1119207..1119587	-	126	147674635	rstB2	VC0395_A1065	-	RstB2 protein
1037	 45.37	0	1119565..1120644	-	359	147675447	rstA1	VC0395_A1066	-	RstA1 protein
1038	 34.52	-2	1120776..1121111	+	111	147673763	-	VC0395_A1067	-	cryptic phage CTXphi transcriptional repressor RstR
1039	 45.14	0	1121353..1121733	-	126	147674737	rstB2	VC0395_A1068	-	RstB2 protein
1040	 45.37	0	1121711..1122790	-	359	147675657	rstA1	VC0395_A1069	-	RstA1 protein
1041	 34.52	-2	1122922..1123257	+	111	147673183	-	VC0395_A1070	-	cryptic phage CTXphi transcriptional repressor RstR
1042	 54.90	+1	1123727..1123879	+	50	147675628	-	VC0395_A1072	-	hypothetical protein
1043	 48.21	0	1123876..1124460	-	194	147673717	-	VC0395_A1071	-	hypothetical protein
1044	 50.36	0	1124698..1125390	-	230	147675658	-	VC0395_A1073	-	hypothetical protein
1045	 46.67	0	1125520..1125804	-	94	147674091	-	VC0395_A1074	-	hypothetical protein
1046	 48.88	0	1125809..1127377	-	522	147673321	cri-1	VC0395_A1075	-	plasmid replication protein Cri
1047	 41.49	-1	1127554..1128105	+	183	147675271	tlcR-1	VC0395_A1076	-	tlcR protein
1048	 38.10	-2	1129144..1129311	-	55	147675604	-	VC0395_A1077	-	hypothetical protein
1049	 50.36	0	1129549..1130241	-	230	147673262	-	VC0395_A1078	-	hypothetical protein
1050	 46.67	0	1130371..1130655	-	94	147674025	-	VC0395_A1079	-	hypothetical protein
1051	 48.88	0	1130660..1132228	-	522	147674442	cri-1	VC0395_A1080	-	plasmid replication protein Cri
1052	 41.49	-1	1132405..1132956	+	183	147674410	tlcR-1	VC0395_A1081	-	tlcR protein
1053	 38.10	-2	1133995..1134162	-	55	147674627	-	VC0395_A1082	-	hypothetical protein
1054	 50.36	0	1134400..1135092	-	230	147674799	-	VC0395_A1083	-	hypothetical protein
1055	 46.67	0	1135222..1135506	-	94	147674344	-	VC0395_A1084	-	hypothetical protein
1056	 48.88	0	1135511..1137079	-	522	147673446	cri-1	VC0395_A1085	-	plasmid replication protein Cri
1057	 41.49	-1	1137256..1137807	+	183	147675257	tlcR-1	VC0395_A1086	-	tlcR protein
1058	 37.22	-2	1138977..1139336	-	119	147673241	-	VC0395_A1087	-	hypothetical protein
1059	 43.54	-1	1139447..1139779	-	110	147673500	-	VC0395_A1088	-	hypothetical protein
1060	 40.20	-1	1139784..1140293	-	169	147675509	-	VC0395_A1089	-	hypothetical protein
1061	 43.91	-1	1140250..1142046	+	598	147675072	-	VC0395_A1090	-	hypothetical protein
1062	 44.51	0	1142111..1142629	+	172	147674296	fabA	VC0395_A1091	-	3-hydroxydecanoyl-(acyl carrier protein) dehydratase
1063	 45.72	0	1143052..1144746	-	564	147675149	-	VC0395_A1092	-	hypothetical protein
1064	 45.00	0	1144752..1146671	-	639	147673353	-	VC0395_A1093	-	ABC transporter ATPase component
47.83	MEAN

3.88	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.