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Vibrio cholerae O395 chromosome 2, complete sequence - 1..3024069 2742 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 953 45.82 0 1017208..1018224 + 338 147675498 - VC0395_A0982 - hypothetical protein 954 44.29 0 1018221..1019552 + 443 147675423 - VC0395_A0983 - GGDEF family protein 955 44.64 0 1019603..1020283 - 226 147674690 - VC0395_A0984 - hypothetical protein 956 43.77 -1 1020657..1021835 + 392 147673521 - VC0395_A0985 - GGDEF family protein 957 51.53 0 1021947..1024793 - 948 147675195 - VC0395_A0986 - hypothetical protein 958 53.05 +1 1024835..1026376 - 513 147674259 - VC0395_A0987 - hypothetical protein 959 50.63 0 1026413..1026730 - 105 147674035 - VC0395_A0988 - heat shock protein 70 960 52.38 +1 1026730..1027149 - 139 147673096 - VC0395_A0989 - hypothetical protein 961 44.34 0 1027053..1027361 - 102 147675597 - VC0395_A0990 - hypothetical protein 962 45.58 0 1027898..1029481 + 527 147674636 - VC0395_A0991 - GGDEF family protein 963 47.83 0 1029499..1030029 + 176 147675170 - VC0395_A0992 - hypothetical protein 964 42.62 -1 1030031..1030213 + 60 147673784 - VC0395_A0993 - hypothetical protein 965 50.32 0 1030315..1030779 - 154 147673194 - VC0395_A0994 - hypothetical protein 966 50.14 0 1030826..1031176 - 116 147675320 - VC0395_A0995 - hypothetical protein 967 48.10 0 1031211..1031420 - 69 147674705 - VC0395_A0996 - hypothetical protein 968 50.41 0 1031378..1035307 + 1309 147674840 hrpA VC0395_A0997 - ATP-dependent RNA helicase HrpA 969 48.45 0 1035447..1035929 + 160 147675259 - VC0395_A0998 - hypothetical protein 970 52.77 +1 1036146..1037498 + 450 147673298 - VC0395_A0999 - putative chaperone 971 50.93 0 1037623..1038639 + 338 147673744 lplA VC0395_A1000 - lipoate-protein ligase A 972 47.78 0 1038875..1039054 + 59 147674263 - VC0395_A1002 - hypothetical protein 973 52.79 +1 1039032..1039982 - 316 147673870 - VC0395_A1001 - LysR family transcriptional regulator 974 52.45 +1 1040069..1041475 + 468 147674152 - VC0395_A1003 - putative multidrug transporter 975 53.14 +1 1041631..1043145 + 504 147673506 cry2 VC0395_A1004 - cryptochrome Cry2 976 48.89 0 1043291..1043605 + 104 147674676 sugE VC0395_A1005 - sugE protein 977 42.72 -1 1043660..1044895 - 411 147673930 - VC0395_A1006 - methyl-accepting chemotaxis protein 978 42.52 -1 1044903..1045283 - 126 147673810 cheY-1 VC0395_A1007 - chemotaxis protein CheY 979 43.04 -1 1045276..1045512 - 78 147673237 - VC0395_A1008 - hypothetical protein 980 46.02 0 1045526..1047811 - 761 147675706 cheA-1 VC0395_A1009 - chemotaxis protein CheA 981 44.27 0 1047808..1048182 - 124 147674402 cheY-2 VC0395_A1010 - chemotaxis protein CheY 982 40.66 -1 1048179..1049024 - 281 147674925 cheR-1 VC0395_A1011 - chemotaxis protein methyltransferase CheR 983 45.21 0 1049035..1049691 - 218 147675588 - VC0395_A1012 - hypothetical protein 984 48.38 0 1049678..1050754 - 358 147675091 cheB-1 VC0395_A1013 - protein-glutamate methylesterase CheB 985 45.04 0 1050775..1052337 - 520 147674323 - VC0395_A1014 - putative purine-binding chemotaxis protein CheW 986 44.86 0 1052350..1054275 - 641 147673937 - VC0395_A1015 - methyl-accepting chemotaxis protein 987 44.92 0 1054867..1056558 + 563 147673332 - VC0395_A1016 - methyl-accepting chemotaxis protein 988 44.50 0 1056637..1057953 + 438 147675551 - VC0395_A1017 - methyl-accepting chemotaxis protein 989 48.99 0 1058135..1059328 + 397 147674915 rhlE-1 VC0395_A1018 - ATP-dependent RNA helicase RhlE 990 43.95 -1 1059387..1059989 - 200 147674524 - VC0395_A1019 - TetR family transcriptional regulator 991 48.87 0 1060096..1061550 + 484 147673563 - VC0395_A1020 - putative multidrug resistance protein 992 50.42 0 1061564..1062751 + 395 147673357 vceA VC0395_A1021 - multidrug resistance protein VceA 993 47.01 0 1062761..1064296 + 511 147673125 vceB VC0395_A1022 - multidrug resistance protein VceB 994 44.67 0 1064371..1066107 - 578 147675234 - VC0395_A1023 - methyl-accepting chemotaxis protein 995 48.19 0 1066329..1067903 - 524 147674997 - VC0395_A1024 - thermostable carboxypeptidase 1 996 49.71 0 1068101..1068619 + 172 147674396 hcp-2 VC0395_A1025 - hcp protein 997 49.85 0 1068747..1072034 + 1095 147673444 vgrG-1 VC0395_A1026 - vgrG protein 998 42.86 -1 1072169..1073029 + 286 147674556 - VC0395_A1027 - hypothetical protein 999 39.30 -2 1073032..1074957 + 641 147673623 - VC0395_A1028 - hypothetical protein 1000 34.68 -2 1074954..1075697 + 247 147673058 - VC0395_A1029 - hypothetical protein 1001 40.11 -1 1075842..1076579 + 245 147675173 - VC0395_A1030 - hypothetical protein 1002 44.76 0 1076667..1077305 + 212 147674879 - VC0395_A1031 - hypothetical protein 1003 49.82 0 1077378..1078748 - 456 147673881 - VC0395_A1032 - sodium/alanine symporter 1004 42.14 -1 1079251..1079409 + 52 147675022 - VC0395_A1033 - hypothetical protein 1005 42.99 -1 1079426..1080160 + 244 147675669 - VC0395_A1034 - hypothetical protein 1006 45.09 0 1080309..1081346 - 345 147673534 potD-1 VC0395_A1035 - spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein 1007 45.14 0 1081457..1082557 - 366 147674149 potD-2 VC0395_A1036 - spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein 1008 44.75 0 1082591..1083361 - 256 147673527 potC VC0395_A1037 - spermidine/putrescine ABC transporter membrane protein 1009 44.60 0 1083361..1084221 - 286 147675686 potB VC0395_A1038 - spermidine/putrescine ABC transporter membrane protein 1010 44.89 0 1084202..1085335 - 377 147673678 potA VC0395_A1039 - putrescine/spermidine ABC transporter ATPase protein 1011 43.14 -1 1085621..1086466 + 281 147673798 - VC0395_A1040 - hypothetical protein 1012 42.91 -1 1086456..1087259 + 267 147674546 - VC0395_A1041 - putative bax protein 1013 43.64 -1 1087261..1087920 + 219 147675006 - VC0395_A1042 - hypothetical protein 1014 43.62 -1 1087996..1088928 - 310 147674407 - VC0395_A1043 - hypothetical protein 1015 46.52 0 1089055..1090002 - 315 147675194 - VC0395_A1044 - universal stress protein UspE 1016 43.69 -1 1090132..1090884 - 250 147674177 fnr VC0395_A1045 - fumarate/nitrate reduction transcriptional regulator 1017 49.48 0 1090974..1091648 - 224 147673967 - VC0395_A1046 - hypothetical protein 1018 41.82 -1 1091645..1091809 - 54 147673519 ccoS VC0395_A1047 - cytochrome oxidase maturation protein, cbb3-type 1019 46.78 0 1091813..1094185 - 790 147674112 - VC0395_A1048 - cation transporter E1-E2 family ATPase 1020 42.98 -1 1094190..1094666 - 158 147674935 - VC0395_A1049 - hypothetical protein 1021 45.67 0 1094745..1095725 - 326 147675355 ccoP VC0395_A1050 - cytochrome c oxidase, subunit CcoP 1022 43.64 -1 1095733..1095897 - 54 147675405 ccoQ VC0395_A1051 - cytochrome c oxidase, cbb3-type, CcoQ subunit 1023 44.61 0 1095909..1096529 - 206 147673108 ccoO VC0395_A1052 - cytochrome c oxidase, subunit CcoO 1024 47.70 0 1096543..1097976 - 477 147673393 ccoN VC0395_A1053 - cytochrome c oxidase, subunit CcoN 1025 42.78 -1 1098654..1099871 + 405 147674313 - VC0395_A1054 - hypothetical protein 1026 39.42 -2 1100035..1101579 + 514 147674610 - VC0395_A1055 - sensor histidine kinase/response regulator 1027 49.54 0 1101640..1103799 - 719 147675517 - VC0395_A1056 - putative toxin secretion transporter 1028 50.36 0 1103802..1105205 - 467 147674597 rtxD VC0395_A1057 - RTX toxin transporter 1029 49.05 0 1105160..1106266 - 368 147675369 - VC0395_A1058 - RtxB protein 1030 47.21 0 1106372..1114318 + 2648 147673063 - VC0395_A1059 - RTX protein 1031 38.48 -2 1115147..1115923 - 258 147673805 ctxA VC0395_A1060 - cholera enterotoxin, A subunit 1032 49.25 0 1116043..1117242 - 399 147674144 zot VC0395_A1061 - zona occludens toxin 1033 45.24 0 1117239..1117532 - 97 147675552 ace VC0395_A1062 - accessory cholera enterotoxin 1034 48.05 0 1117529..1118812 - 427 147673104 - VC0395_A1063 - hypothetical protein 1035 46.59 0 1118823..1119071 - 82 147673551 cep VC0395_A1064 - colonization factor 1036 45.14 0 1119207..1119587 - 126 147674635 rstB2 VC0395_A1065 - RstB2 protein 1037 45.37 0 1119565..1120644 - 359 147675447 rstA1 VC0395_A1066 - RstA1 protein 1038 34.52 -2 1120776..1121111 + 111 147673763 - VC0395_A1067 - cryptic phage CTXphi transcriptional repressor RstR 1039 45.14 0 1121353..1121733 - 126 147674737 rstB2 VC0395_A1068 - RstB2 protein 1040 45.37 0 1121711..1122790 - 359 147675657 rstA1 VC0395_A1069 - RstA1 protein 1041 34.52 -2 1122922..1123257 + 111 147673183 - VC0395_A1070 - cryptic phage CTXphi transcriptional repressor RstR 1042 54.90 +1 1123727..1123879 + 50 147675628 - VC0395_A1072 - hypothetical protein 1043 48.21 0 1123876..1124460 - 194 147673717 - VC0395_A1071 - hypothetical protein 1044 50.36 0 1124698..1125390 - 230 147675658 - VC0395_A1073 - hypothetical protein 1045 46.67 0 1125520..1125804 - 94 147674091 - VC0395_A1074 - hypothetical protein 1046 48.88 0 1125809..1127377 - 522 147673321 cri-1 VC0395_A1075 - plasmid replication protein Cri 1047 41.49 -1 1127554..1128105 + 183 147675271 tlcR-1 VC0395_A1076 - tlcR protein 1048 38.10 -2 1129144..1129311 - 55 147675604 - VC0395_A1077 - hypothetical protein 1049 50.36 0 1129549..1130241 - 230 147673262 - VC0395_A1078 - hypothetical protein 1050 46.67 0 1130371..1130655 - 94 147674025 - VC0395_A1079 - hypothetical protein 1051 48.88 0 1130660..1132228 - 522 147674442 cri-1 VC0395_A1080 - plasmid replication protein Cri 1052 41.49 -1 1132405..1132956 + 183 147674410 tlcR-1 VC0395_A1081 - tlcR protein 47.83 MEAN 3.88 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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