IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.97   STD DEV: 4.79
Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, complete sequence - 1..1072315
1093 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
890	 46.46	0	860947..862683	-	578	15601660	-	VCA0906	-	methyl-accepting chemotaxis protein
891	 47.08	0	862985..863515	-	176	15601661	-	VCA0907	-	hypothetical protein
892	 45.36	0	863540..864121	-	193	15601662	-	VCA0908	-	hypothetical protein
893	 49.49	0	864067..865434	-	455	15601663	-	VCA0909	-	coproporphyrinogen III oxidase
894	 50.13	0	865691..866440	+	249	15601664	-	VCA0910	-	tonB1 protein
895	 53.13	+1	866440..867126	+	228	15601665	-	VCA0911	-	TonB system transport protein ExbB1
896	 47.72	0	867123..867539	+	138	15601666	-	VCA0912	-	TonB system transport protein ExbD1
897	 49.88	0	867550..868383	+	277	15601667	-	VCA0913	-	hemin ABC transporter, periplasmic hemin-binding protein HutB
898	 52.52	+1	868395..869426	+	343	15601668	-	VCA0914	-	hemin ABC transporter, permease protein, putative
899	 52.04	+1	869494..870204	+	236	15601669	-	VCA0915	-	hemin importer ATP-binding subunit
900	 46.46	0	870279..870377	-	32	15601670	-	VCA0916	-	hypothetical protein
901	 45.47	0	870338..870823	-	161	15601671	-	VCA0917	-	TetR family transcriptional regulator
902	 39.58	-1	870792..870887	-	31	15601672	-	VCA0918	-	hypothetical protein
903	 44.22	0	871322..871624	+	100	15601673	-	VCA0919	-	hypothetical protein
904	 48.83	0	871827..872426	+	199	15601674	-	VCA0920	-	hypothetical protein
905	 46.29	0	872487..873605	-	372	15601675	-	VCA0921	-	hypothetical protein
906	 49.26	0	873771..874379	+	202	15601676	-	VCA0922	-	hypothetical protein
907	 47.52	0	874442..876400	+	652	15601677	-	VCA0923	-	methyl-accepting chemotaxis protein
908	 49.72	0	876463..878451	-	662	15601678	-	VCA0924	-	hypothetical protein
909	 52.80	+1	878819..879871	+	350	15601679	-	VCA0925	-	dihydroorotase
910	 47.18	0	879934..881031	-	365	15601680	-	VCA0926	-	AraC/XylS family transcriptional regulator
911	 46.44	0	881142..881492	+	116	15601681	-	VCA0927	-	hypothetical protein
912	 45.49	0	881489..881998	+	169	15601682	-	VCA0928	-	hypothetical protein
913	 51.42	+1	882048..883175	-	375	15601683	rumB	VCA0929	-	23S rRNA methyluridine methyltransferase
914	 49.81	0	883289..884314	-	341	15601684	-	VCA0930	-	hypothetical protein
915	 47.79	0	884337..885719	-	460	15601685	-	VCA0931	-	hypothetical protein
916	 40.58	-1	885705..885842	+	45	15601686	-	VCA0932	-	hypothetical protein
917	 39.44	-1	886068..886280	+	70	15601687	-	VCA0933	-	cold shock domain-contain protein
918	 36.27	-2	886377..886478	-	33	15601688	-	VCA0934	-	hypothetical protein
919	 43.98	0	886850..887206	+	118	15601689	-	VCA0935	-	hypothetical protein
920	 51.86	+1	887418..888356	+	312	15601690	-	VCA0936	-	hypothetical protein
921	 48.48	0	888345..889136	-	263	15601691	-	VCA0937	-	AraC/XylS family transcriptional regulator
922	 45.45	0	890253..891218	+	321	15601692	-	VCA0939	-	sensory box/GGDEF family protein
923	 48.03	0	891370..892131	+	253	15601693	-	VCA0940	-	DeoR family transcriptional regulator
924	 48.06	0	892283..892771	+	162	15601694	-	VCA0941	-	acyl-CoA thioester hydrolase-related protein
925	 46.95	0	892855..893133	+	92	15601695	-	VCA0942	-	hypothetical protein
926	 49.38	0	893457..894347	-	296	15601696	malG	VCA0943	-	maltose transporter permease
927	 48.19	0	894359..895933	-	524	15601697	malF	VCA0944	-	maltose transporter membrane protein
928	 47.26	0	896008..897228	-	406	15601698	malE	VCA0945	-	maltose ABC transporter periplasmic protein
929	 50.18	0	897862..898983	+	373	15601699	-	VCA0946	-	maltose/maltodextrin transporter ATP-binding protein
930	 41.76	0	899206..899727	+	173	15601700	-	VCA0947	-	spermidine n1-acetyltransferase
931	 43.09	0	899732..899977	+	81	15601701	-	VCA0948	-	hypothetical protein
932	 46.76	0	900115..900732	-	205	15601702	-	VCA0949	-	SM-20-related protein
933	 42.64	0	900851..900979	-	42	15601703	-	VCA0950	-	hypothetical protein
934	 49.53	0	900939..901259	+	106	15601704	-	VCA0951	-	hypothetical protein
935	 36.74	-1	901426..902100	-	224	15601705	-	VCA0952	-	LuxR family transcriptional regulator
936	 46.59	0	902678..902956	-	92	15601706	-	VCA0953	-	peptidyl-prolyl cis-trans isomerase C
937	 46.58	0	903131..904051	+	306	15601707	-	VCA0954	-	chemotaxis protein CheV, putative
938	 48.38	0	904127..904651	-	174	15601708	-	VCA0955	-	MarR family transcriptional regulator
939	 45.59	0	904820..905839	+	339	15601709	-	VCA0956	-	GGDEF family protein
940	 44.01	0	905958..906566	-	202	15601710	-	VCA0957	-	malate synthase
941	 48.42	0	906685..908202	+	505	15601711	-	VCA0958	-	hypothetical protein
942	 33.33	-2	908305..908463	-	52	15601712	-	VCA0959	-	hypothetical protein
943	 45.49	0	908482..909855	-	457	15601713	-	VCA0960	-	GGDEF family protein
944	 45.65	0	910197..910805	+	202	15601714	-	VCA0961	-	hypothetical protein
945	 48.72	0	911092..912300	+	402	15601715	-	VCA0962	-	hypothetical protein
946	 46.32	0	912325..913248	-	307	15601716	-	VCA0963	-	hypothetical protein
947	 45.92	0	913349..914254	+	301	15601717	-	VCA0964	-	glycine cleavage operon activator, putative
948	 42.65	0	914406..915596	+	396	15601718	-	VCA0965	-	GGDEF family protein
949	 48.82	0	915599..915895	-	98	15601719	-	VCA0966	-	hypothetical protein
950	 49.52	0	915858..915962	-	34	15601720	-	VCA0967	-	hypothetical protein
951	 43.75	0	915982..916077	+	31	15601721	-	VCA0968	-	hypothetical protein
952	 51.00	+1	916070..916918	+	282	15601722	-	VCA0969	-	pirin-related protein
953	 47.62	0	917056..917370	-	104	15601723	-	VCA0970	-	hypothetical protein
954	 45.12	0	917882..918322	+	146	15601724	-	VCA0971	-	hypothetical protein
955	 46.51	0	918331..919635	-	434	15601725	-	VCA0972	-	hypothetical protein
956	 33.33	-2	919692..919865	+	57	15601726	-	VCA0973	-	hypothetical protein
957	 48.81	0	919898..921583	-	561	15601727	-	VCA0974	-	methyl-accepting chemotaxis protein
958	 48.12	0	921798..924158	-	786	15601728	-	VCA0975	-	ATP-dependent protease LA-related protein
959	 47.07	0	924362..924856	+	164	15601729	-	VCA0976	-	hypothetical protein
960	 48.46	0	924885..926504	+	539	15601730	-	VCA0977	-	ABC transporter, ATP-binding protein
961	 44.40	0	926671..927402	-	243	15601731	-	VCA0978	-	amino acid ABC transporter, periplasmic amino acid-binding protein, putative
962	 47.46	0	927422..928306	-	294	15601732	-	VCA0979	-	methyl-accepting chemotaxis protein
963	 43.10	0	928326..928970	-	214	15601733	-	VCA0980	-	hypothetical protein
964	 45.83	0	929101..929844	-	247	15601734	-	VCA0981	-	hypothetical protein
965	 48.67	0	929998..930897	-	299	15601735	-	VCA0982	-	LysR family transcriptional regulator
966	 52.60	+1	931049..932797	+	582	15601736	-	VCA0983	-	L-lactate permease, putative
967	 54.00	+1	932920..934056	+	378	15601737	lldD	VCA0984	-	L-lactate dehydrogenase
968	 53.44	+1	934154..937033	+	959	15601738	-	VCA0985	-	oxidoreductase/iron-sulfur cluster-binding protein
969	 50.24	0	937117..937950	-	277	15601739	-	VCA0986	-	hypothetical protein
970	 51.91	+1	938085..940496	+	803	15601740	-	VCA0987	-	phosphoenolpyruvate synthase
971	 48.04	0	940679..942235	+	518	15601741	-	VCA0988	-	methyl-accepting chemotaxis protein
972	 50.64	0	942593..943927	+	444	15601742	-	VCA0989	-	hypothetical protein
973	 50.89	+1	944006..945292	-	428	15601743	-	VCA0990	-	DEAD-box ATP dependent DNA helicase
974	 49.30	0	945384..946310	-	308	15601744	-	VCA0991	-	LysR family transcriptional regulator
975	 46.12	0	946431..947087	+	218	15601745	-	VCA0992	-	glutaredoxin 2
976	 50.54	0	947097..948200	+	367	15601746	-	VCA0993	-	N-ethylmaleimide reductase
977	 49.64	0	948321..949301	-	326	15601747	-	VCA0994	-	hypothetical protein
978	 50.98	+1	949434..949535	+	33	15601748	-	VCA0995	-	hypothetical protein
979	 50.70	0	949658..951517	+	619	15601749	-	VCA0996	-	ABC transporter, ATP-binding protein
980	 49.17	0	951648..952373	+	241	15601750	-	VCA0997	-	hypothetical protein
981	 52.59	+1	952463..953506	-	347	15601751	-	VCA0998	-	Oye family NADH-dependent flavin oxidoreductase
982	 49.31	0	953656..954231	+	191	15601752	-	VCA0999	-	TetR family transcriptional regulator
983	 52.86	+1	954303..954932	-	209	15601753	-	VCA1000	-	hypothetical protein
984	 51.92	+1	955133..955966	+	277	15601754	-	VCA1001	-	AraC/XylS family transcriptional regulator
985	 52.22	+1	956118..956837	+	239	15601755	-	VCA1002	-	AzlC family protein
986	 51.26	+1	956834..957151	+	105	15601756	-	VCA1003	-	hypothetical protein
987	 48.62	0	957203..957817	-	204	15601757	-	VCA1004	-	hypothetical protein
988	 47.06	0	957933..958391	-	152	15601758	-	VCA1005	-	MarR family transcriptional regulator
989	 52.28	+1	958488..958925	+	145	15601759	-	VCA1006	-	organic hydroperoxide resistance protein, putative
45.97	MEAN

4.79	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.