IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.97   STD DEV: 4.79
Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, complete sequence - 1..1072315
1093 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
845	 51.81	+1	809269..811341	+	690	15601615	malS	VCA0860	-	periplasmic alpha-amylase precursor
846	 42.31	0	811283..811516	+	77	15601616	-	VCA0861	-	hypothetical protein
847	 50.77	+1	811876..813114	+	412	15601617	-	VCA0862	-	long-chain fatty acid transport protein
848	 49.18	0	813130..815520	+	796	15601618	-	VCA0863	-	lipase, putative
849	 44.06	0	815881..817278	+	465	15601619	-	VCA0864	-	methyl-accepting chemotaxis protein
850	 50.00	0	817359..819188	-	609	15601620	-	VCA0865	-	hemagglutinin/protease
851	 36.67	-1	819174..819413	+	79	15601621	-	VCA0866	-	hypothetical protein
852	 42.97	0	819609..820262	-	217	15601622	-	VCA0867	-	outer membrane protein W
853	 48.72	0	820452..820685	+	77	15601623	-	VCA0868	-	hypothetical protein
854	 47.47	0	821082..821180	-	32	15601624	-	VCA0869	-	hypothetical protein
855	 46.16	0	821216..822166	+	316	15601625	pbpG	VCA0870	-	D-alanyl-D-alanine endopeptidase
856	 43.67	0	822401..823822	+	473	15601626	-	VCA0871	-	GntR family transcriptional regulator
857	 47.27	0	823951..825543	+	530	15601627	-	VCA0872	-	cytochrome d ubiquinol oxidase, subunit I
858	 44.24	0	825556..826692	+	378	15601628	-	VCA0873	-	cytochrome d ubiquinol oxidase, subunit II
859	 35.78	-2	827514..827717	+	67	15601629	-	VCA0874	-	hypothetical protein
860	 46.83	0	827934..829259	-	441	15601630	-	VCA0875	-	D-serine dehydratase
861	 38.31	-1	829467..830411	+	314	15601631	-	VCA0876	-	DNA-binding transcriptional regulator DsdC
862	 51.35	+1	830711..831787	+	358	15601632	-	VCA0877	-	hydrolase, putative
863	 45.68	0	831895..832056	+	53	15601633	-	VCA0878	-	integrase-related protein
864	 36.54	-1	832585..832740	-	51	15601634	-	VCA0879	-	hypothetical protein
865	 40.94	-1	832685..833065	+	126	15601635	-	VCA0880	-	hypothetical protein
866	 40.91	-1	833090..833485	+	131	15601636	-	VCA0881	-	hypothetical protein
867	 41.31	0	833497..834561	+	354	15601637	-	VCA0882	-	hypothetical protein
868	 43.60	0	834574..835683	+	369	15601638	-	VCA0883	-	hypothetical protein
869	 39.92	-1	835734..836795	+	353	15601639	-	VCA0884	-	hypothetical protein
870	 48.74	0	837892..838923	-	343	15601640	tdh	VCA0885	-	L-threonine 3-dehydrogenase
871	 50.59	0	838926..840119	-	397	15601641	-	VCA0886	-	2-amino-3-ketobutyrate coenzyme A ligase
872	 44.23	0	841276..842037	+	253	15601642	-	VCA0888	-	LuxR family transcriptional regulator
873	 50.27	0	842137..843075	+	312	15601643	-	VCA0889	-	LysR family transcriptional regulator
874	 47.92	0	843069..843452	+	127	15601644	-	VCA0890	-	glyoxylase I family protein
875	 51.03	+1	843530..844942	-	470	15601645	-	VCA0891	-	hypothetical protein
876	 46.62	0	845054..845452	-	132	15601646	-	VCA0892	-	hypothetical protein
877	 45.88	0	845558..846067	-	169	15601647	-	VCA0893	-	hypothetical protein
878	 50.60	0	846018..846764	-	248	15601648	-	VCA0894	-	putative hydrolase
879	 47.90	0	846932..849877	+	981	15601649	-	VCA0895	-	chemotactic transducer-related protein
880	 50.46	0	850221..851726	+	501	15601650	-	VCA0896	-	glucose-6-phosphate 1-dehydrogenase
881	 51.32	+1	851723..852439	+	238	15601651	-	VCA0897	-	6-phosphogluconolactonase
882	 50.59	0	852453..853901	+	482	15601652	-	VCA0898	-	6-phosphogluconate dehydrogenase
883	 42.75	0	854057..854194	+	45	15601653	-	VCA0899	-	hypothetical protein
884	 47.32	0	854462..855376	+	304	15601654	-	VCA0900	-	hypothetical protein
885	 50.32	0	855370..855999	+	209	15601655	-	VCA0901	-	hypothetical protein
886	 44.32	0	856032..856868	-	278	15601656	-	VCA0902	-	hypothetical protein
887	 52.82	+1	857004..858137	-	377	15601657	-	VCA0903	-	hypothetical protein
888	 49.52	0	858156..859508	-	450	15601658	-	VCA0904	-	permease
889	 47.28	0	859667..860806	-	379	15601659	-	VCA0905	-	hypothetical protein
890	 46.46	0	860947..862683	-	578	15601660	-	VCA0906	-	methyl-accepting chemotaxis protein
891	 47.08	0	862985..863515	-	176	15601661	-	VCA0907	-	hypothetical protein
892	 45.36	0	863540..864121	-	193	15601662	-	VCA0908	-	hypothetical protein
893	 49.49	0	864067..865434	-	455	15601663	-	VCA0909	-	coproporphyrinogen III oxidase
894	 50.13	0	865691..866440	+	249	15601664	-	VCA0910	-	tonB1 protein
895	 53.13	+1	866440..867126	+	228	15601665	-	VCA0911	-	TonB system transport protein ExbB1
896	 47.72	0	867123..867539	+	138	15601666	-	VCA0912	-	TonB system transport protein ExbD1
897	 49.88	0	867550..868383	+	277	15601667	-	VCA0913	-	hemin ABC transporter, periplasmic hemin-binding protein HutB
898	 52.52	+1	868395..869426	+	343	15601668	-	VCA0914	-	hemin ABC transporter, permease protein, putative
899	 52.04	+1	869494..870204	+	236	15601669	-	VCA0915	-	hemin importer ATP-binding subunit
900	 46.46	0	870279..870377	-	32	15601670	-	VCA0916	-	hypothetical protein
901	 45.47	0	870338..870823	-	161	15601671	-	VCA0917	-	TetR family transcriptional regulator
902	 39.58	-1	870792..870887	-	31	15601672	-	VCA0918	-	hypothetical protein
903	 44.22	0	871322..871624	+	100	15601673	-	VCA0919	-	hypothetical protein
904	 48.83	0	871827..872426	+	199	15601674	-	VCA0920	-	hypothetical protein
905	 46.29	0	872487..873605	-	372	15601675	-	VCA0921	-	hypothetical protein
906	 49.26	0	873771..874379	+	202	15601676	-	VCA0922	-	hypothetical protein
907	 47.52	0	874442..876400	+	652	15601677	-	VCA0923	-	methyl-accepting chemotaxis protein
908	 49.72	0	876463..878451	-	662	15601678	-	VCA0924	-	hypothetical protein
909	 52.80	+1	878819..879871	+	350	15601679	-	VCA0925	-	dihydroorotase
910	 47.18	0	879934..881031	-	365	15601680	-	VCA0926	-	AraC/XylS family transcriptional regulator
911	 46.44	0	881142..881492	+	116	15601681	-	VCA0927	-	hypothetical protein
912	 45.49	0	881489..881998	+	169	15601682	-	VCA0928	-	hypothetical protein
913	 51.42	+1	882048..883175	-	375	15601683	rumB	VCA0929	-	23S rRNA methyluridine methyltransferase
914	 49.81	0	883289..884314	-	341	15601684	-	VCA0930	-	hypothetical protein
915	 47.79	0	884337..885719	-	460	15601685	-	VCA0931	-	hypothetical protein
916	 40.58	-1	885705..885842	+	45	15601686	-	VCA0932	-	hypothetical protein
917	 39.44	-1	886068..886280	+	70	15601687	-	VCA0933	-	cold shock domain-contain protein
918	 36.27	-2	886377..886478	-	33	15601688	-	VCA0934	-	hypothetical protein
919	 43.98	0	886850..887206	+	118	15601689	-	VCA0935	-	hypothetical protein
920	 51.86	+1	887418..888356	+	312	15601690	-	VCA0936	-	hypothetical protein
921	 48.48	0	888345..889136	-	263	15601691	-	VCA0937	-	AraC/XylS family transcriptional regulator
922	 45.45	0	890253..891218	+	321	15601692	-	VCA0939	-	sensory box/GGDEF family protein
923	 48.03	0	891370..892131	+	253	15601693	-	VCA0940	-	DeoR family transcriptional regulator
924	 48.06	0	892283..892771	+	162	15601694	-	VCA0941	-	acyl-CoA thioester hydrolase-related protein
925	 46.95	0	892855..893133	+	92	15601695	-	VCA0942	-	hypothetical protein
926	 49.38	0	893457..894347	-	296	15601696	malG	VCA0943	-	maltose transporter permease
927	 48.19	0	894359..895933	-	524	15601697	malF	VCA0944	-	maltose transporter membrane protein
928	 47.26	0	896008..897228	-	406	15601698	malE	VCA0945	-	maltose ABC transporter periplasmic protein
929	 50.18	0	897862..898983	+	373	15601699	-	VCA0946	-	maltose/maltodextrin transporter ATP-binding protein
930	 41.76	0	899206..899727	+	173	15601700	-	VCA0947	-	spermidine n1-acetyltransferase
931	 43.09	0	899732..899977	+	81	15601701	-	VCA0948	-	hypothetical protein
932	 46.76	0	900115..900732	-	205	15601702	-	VCA0949	-	SM-20-related protein
933	 42.64	0	900851..900979	-	42	15601703	-	VCA0950	-	hypothetical protein
934	 49.53	0	900939..901259	+	106	15601704	-	VCA0951	-	hypothetical protein
935	 36.74	-1	901426..902100	-	224	15601705	-	VCA0952	-	LuxR family transcriptional regulator
936	 46.59	0	902678..902956	-	92	15601706	-	VCA0953	-	peptidyl-prolyl cis-trans isomerase C
937	 46.58	0	903131..904051	+	306	15601707	-	VCA0954	-	chemotaxis protein CheV, putative
938	 48.38	0	904127..904651	-	174	15601708	-	VCA0955	-	MarR family transcriptional regulator
939	 45.59	0	904820..905839	+	339	15601709	-	VCA0956	-	GGDEF family protein
940	 44.01	0	905958..906566	-	202	15601710	-	VCA0957	-	malate synthase
941	 48.42	0	906685..908202	+	505	15601711	-	VCA0958	-	hypothetical protein
942	 33.33	-2	908305..908463	-	52	15601712	-	VCA0959	-	hypothetical protein
943	 45.49	0	908482..909855	-	457	15601713	-	VCA0960	-	GGDEF family protein
944	 45.65	0	910197..910805	+	202	15601714	-	VCA0961	-	hypothetical protein
45.97	MEAN

4.79	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.