IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.97   STD DEV: 4.79
Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, complete sequence - 1..1072315
1093 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
800	 48.64	0	761353..763338	-	661	15601570	-	VCA0815	-	arginine decarboxylase
801	 36.05	-2	763408..763554	-	48	15601571	-	VCA0816	-	hypothetical protein
802	 47.01	0	763686..764270	+	194	15601572	-	VCA0817	-	hypothetical protein
803	 48.94	0	764273..765637	+	454	15601573	-	VCA0818	-	magnesium transporter MgtE, putative
804	 45.70	0	765822..766112	+	96	15601574	groES	VCA0819	-	co-chaperonin GroES
805	 51.48	+1	766141..767733	+	530	15601575	groEL	VCA0820	-	chaperonin GroEL
806	 51.69	+1	767766..767972	+	68	15601576	-	VCA0821	-	hypothetical protein
807	 49.61	0	768053..769477	-	474	15601577	-	VCA0822	-	aspartate kinase
808	 46.04	0	769474..769890	-	138	15601578	ectC	VCA0823	-	L-ectoine synthase
809	 50.73	0	769955..771190	-	411	15601579	-	VCA0824	-	diaminobutyrate--2-oxoglutarate aminotransferase
810	 48.66	0	771214..771735	-	173	15601580	-	VCA0825	-	L-2,4-diaminobutyric acid acetyltransferase
811	 32.48	-2	771848..771964	-	38	15601581	-	VCA0826	-	hypothetical protein
812	 43.94	0	772435..772764	-	109	15601582	phhB	VCA0827	-	pterin-4-alpha-carbinolamine dehydratase
813	 47.13	0	772754..773623	-	289	15601583	phhA	VCA0828	-	phenylalanine 4-monooxygenase
814	 48.72	0	773782..775731	+	649	15601584	-	VCA0829	-	acetoacetyl-CoA synthetase
815	 47.90	0	775834..776808	+	324	15601585	-	VCA0830	-	LysR family transcriptional regulator
816	 38.97	-1	776810..777004	+	64	15601586	-	VCA0831	-	hypothetical protein
817	 48.66	0	777308..777940	-	210	15601587	-	VCA0832	-	methyltransferase, putative
818	 46.64	0	778082..778960	+	292	15601588	-	VCA0833	-	LysR family transcriptional regulator
819	 48.53	0	779097..780050	+	317	15601589	-	VCA0834	-	hypothetical protein
820	 51.37	+1	780082..781068	-	328	15601590	-	VCA0835	-	hypothetical protein
821	 48.88	0	781106..781684	-	192	15601591	-	VCA0836	-	hexapeptide repeat-containing acetyltransferase
822	 48.25	0	781822..783135	-	437	15601592	-	VCA0837	-	hemolysin, putative
823	 47.90	0	783290..783694	-	134	15601593	-	VCA0838	-	hypothetical protein
824	 46.97	0	783716..783847	+	43	15601594	-	VCA0839	-	hypothetical protein
825	 46.91	0	784587..785072	+	161	15601595	-	VCA0840	-	deoxycytidylate deaminase, putative
826	 43.94	0	785126..785257	-	43	15601596	-	VCA0841	-	hypothetical protein
827	 45.10	0	785502..785654	-	50	15601597	-	VCA0842	-	hypothetical protein
828	 49.02	0	785728..787257	+	509	15601598	-	VCA0843	-	glyceraldehyde-3-phosphate dehydrogenase
829	 44.90	0	787373..787519	+	48	15601599	-	VCA0844	-	hypothetical protein
830	 43.27	0	787471..787782	+	103	15601600	-	VCA0845	-	hypothetical protein
831	 51.06	+1	787831..788445	-	204	15601601	-	VCA0846	-	hypothetical protein
832	 50.44	0	788631..789875	+	414	161582038	-	VCA0847	-	inner membrane protein YjeH
833	 44.95	0	789918..790898	-	326	15601603	-	VCA0848	-	GGDEF family protein
834	 50.12	0	791029..800820	-	3263	15601604	-	VCA0849	-	hypothetical protein
835	 46.56	0	801121..801906	-	261	15601605	-	VCA0850	-	response regulator
836	 46.67	0	802066..803145	-	359	15601606	-	VCA0851	-	hypothetical protein
837	 50.12	0	803146..804390	-	414	15601607	-	VCA0852	-	hypothetical protein
838	 47.72	0	804395..805138	-	247	15601608	-	VCA0853	-	hypothetical protein
839	 51.11	+1	805131..806390	-	419	15601609	-	VCA0854	-	hypothetical protein
840	 50.15	0	806378..807061	-	227	15601610	-	VCA0855	-	ABC transporter, ATP-binding protein
841	 49.40	0	807070..807741	-	223	15601611	-	VCA0856	-	hypothetical protein
842	 49.63	0	807768..807902	+	44	15601612	-	VCA0857	-	hypothetical protein
843	 45.14	0	807903..808046	+	47	15601613	-	VCA0858	-	hypothetical protein
844	 50.32	0	808054..808977	-	307	15601614	-	VCA0859	-	aldo/keto reductase family oxidoreductase
845	 51.81	+1	809269..811341	+	690	15601615	malS	VCA0860	-	periplasmic alpha-amylase precursor
846	 42.31	0	811283..811516	+	77	15601616	-	VCA0861	-	hypothetical protein
847	 50.77	+1	811876..813114	+	412	15601617	-	VCA0862	-	long-chain fatty acid transport protein
848	 49.18	0	813130..815520	+	796	15601618	-	VCA0863	-	lipase, putative
849	 44.06	0	815881..817278	+	465	15601619	-	VCA0864	-	methyl-accepting chemotaxis protein
850	 50.00	0	817359..819188	-	609	15601620	-	VCA0865	-	hemagglutinin/protease
851	 36.67	-1	819174..819413	+	79	15601621	-	VCA0866	-	hypothetical protein
852	 42.97	0	819609..820262	-	217	15601622	-	VCA0867	-	outer membrane protein W
853	 48.72	0	820452..820685	+	77	15601623	-	VCA0868	-	hypothetical protein
854	 47.47	0	821082..821180	-	32	15601624	-	VCA0869	-	hypothetical protein
855	 46.16	0	821216..822166	+	316	15601625	pbpG	VCA0870	-	D-alanyl-D-alanine endopeptidase
856	 43.67	0	822401..823822	+	473	15601626	-	VCA0871	-	GntR family transcriptional regulator
857	 47.27	0	823951..825543	+	530	15601627	-	VCA0872	-	cytochrome d ubiquinol oxidase, subunit I
858	 44.24	0	825556..826692	+	378	15601628	-	VCA0873	-	cytochrome d ubiquinol oxidase, subunit II
859	 35.78	-2	827514..827717	+	67	15601629	-	VCA0874	-	hypothetical protein
860	 46.83	0	827934..829259	-	441	15601630	-	VCA0875	-	D-serine dehydratase
861	 38.31	-1	829467..830411	+	314	15601631	-	VCA0876	-	DNA-binding transcriptional regulator DsdC
862	 51.35	+1	830711..831787	+	358	15601632	-	VCA0877	-	hydrolase, putative
863	 45.68	0	831895..832056	+	53	15601633	-	VCA0878	-	integrase-related protein
864	 36.54	-1	832585..832740	-	51	15601634	-	VCA0879	-	hypothetical protein
865	 40.94	-1	832685..833065	+	126	15601635	-	VCA0880	-	hypothetical protein
866	 40.91	-1	833090..833485	+	131	15601636	-	VCA0881	-	hypothetical protein
867	 41.31	0	833497..834561	+	354	15601637	-	VCA0882	-	hypothetical protein
868	 43.60	0	834574..835683	+	369	15601638	-	VCA0883	-	hypothetical protein
869	 39.92	-1	835734..836795	+	353	15601639	-	VCA0884	-	hypothetical protein
870	 48.74	0	837892..838923	-	343	15601640	tdh	VCA0885	-	L-threonine 3-dehydrogenase
871	 50.59	0	838926..840119	-	397	15601641	-	VCA0886	-	2-amino-3-ketobutyrate coenzyme A ligase
872	 44.23	0	841276..842037	+	253	15601642	-	VCA0888	-	LuxR family transcriptional regulator
873	 50.27	0	842137..843075	+	312	15601643	-	VCA0889	-	LysR family transcriptional regulator
874	 47.92	0	843069..843452	+	127	15601644	-	VCA0890	-	glyoxylase I family protein
875	 51.03	+1	843530..844942	-	470	15601645	-	VCA0891	-	hypothetical protein
876	 46.62	0	845054..845452	-	132	15601646	-	VCA0892	-	hypothetical protein
877	 45.88	0	845558..846067	-	169	15601647	-	VCA0893	-	hypothetical protein
878	 50.60	0	846018..846764	-	248	15601648	-	VCA0894	-	putative hydrolase
879	 47.90	0	846932..849877	+	981	15601649	-	VCA0895	-	chemotactic transducer-related protein
880	 50.46	0	850221..851726	+	501	15601650	-	VCA0896	-	glucose-6-phosphate 1-dehydrogenase
881	 51.32	+1	851723..852439	+	238	15601651	-	VCA0897	-	6-phosphogluconolactonase
882	 50.59	0	852453..853901	+	482	15601652	-	VCA0898	-	6-phosphogluconate dehydrogenase
883	 42.75	0	854057..854194	+	45	15601653	-	VCA0899	-	hypothetical protein
884	 47.32	0	854462..855376	+	304	15601654	-	VCA0900	-	hypothetical protein
885	 50.32	0	855370..855999	+	209	15601655	-	VCA0901	-	hypothetical protein
886	 44.32	0	856032..856868	-	278	15601656	-	VCA0902	-	hypothetical protein
887	 52.82	+1	857004..858137	-	377	15601657	-	VCA0903	-	hypothetical protein
888	 49.52	0	858156..859508	-	450	15601658	-	VCA0904	-	permease
889	 47.28	0	859667..860806	-	379	15601659	-	VCA0905	-	hypothetical protein
890	 46.46	0	860947..862683	-	578	15601660	-	VCA0906	-	methyl-accepting chemotaxis protein
891	 47.08	0	862985..863515	-	176	15601661	-	VCA0907	-	hypothetical protein
892	 45.36	0	863540..864121	-	193	15601662	-	VCA0908	-	hypothetical protein
893	 49.49	0	864067..865434	-	455	15601663	-	VCA0909	-	coproporphyrinogen III oxidase
894	 50.13	0	865691..866440	+	249	15601664	-	VCA0910	-	tonB1 protein
895	 53.13	+1	866440..867126	+	228	15601665	-	VCA0911	-	TonB system transport protein ExbB1
896	 47.72	0	867123..867539	+	138	15601666	-	VCA0912	-	TonB system transport protein ExbD1
897	 49.88	0	867550..868383	+	277	15601667	-	VCA0913	-	hemin ABC transporter, periplasmic hemin-binding protein HutB
898	 52.52	+1	868395..869426	+	343	15601668	-	VCA0914	-	hemin ABC transporter, permease protein, putative
899	 52.04	+1	869494..870204	+	236	15601669	-	VCA0915	-	hemin importer ATP-binding subunit
45.97	MEAN

4.79	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.