IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.97   STD DEV: 4.79
Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, complete sequence - 1..1072315
1093 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
749	 48.03	0	708502..709059	+	185	15601519	-	VCA0764	-	MutT/nudix family protein
750	 52.13	+1	709044..710075	+	343	15601520	-	VCA0765	-	L-allo-threonine aldolase
751	 48.75	0	710072..710512	+	146	15601521	-	VCA0766	-	cytochrome c554
752	 47.07	0	710616..711350	+	244	15601522	-	VCA0767	-	TetR family transcriptional regulator
753	 49.96	0	711450..712718	-	422	15601523	-	VCA0768	-	DEAD-box ATP dependent DNA helicase
754	 49.83	0	712755..713336	-	193	15601524	-	VCA0769	-	hypothetical protein
755	 45.83	0	713373..713492	-	39	15601525	-	VCA0770	-	hypothetical protein
756	 46.08	0	713520..713621	-	33	15601526	-	VCA0771	-	hypothetical protein
757	 49.38	0	713856..715058	+	400	15601527	-	VCA0772	-	tyrosine-specific transport protein
758	 50.63	0	715286..716707	+	473	15601528	-	VCA0773	-	methyl-accepting chemotaxis protein
759	 48.77	0	716793..717809	-	338	15601529	-	VCA0774	-	UDP-glucose 4-epimerase
760	 43.84	0	717822..718040	-	72	15601530	-	VCA0775	-	hypothetical protein
761	 50.61	0	718129..718869	+	246	15601531	-	VCA0776	-	hypothetical protein
762	 52.18	+1	718873..719583	+	236	15601532	-	VCA0777	-	hypothetical protein
763	 54.30	+1	719693..720622	+	309	15601533	-	VCA0778	-	hypothetical protein
764	 53.07	+1	720674..722107	-	477	15601534	-	VCA0779	-	hypothetical protein
765	 47.56	0	722216..723382	-	388	15601535	-	VCA0780	-	UDP-glucose 6-dehydrogenase
766	 51.80	+1	723771..726218	-	815	15601536	-	VCA0781	-	hypothetical protein
767	 50.59	0	726215..726892	-	225	15601537	-	VCA0782	-	ABC transporter, ATP-binding protein
768	 47.99	0	726843..727490	+	215	15601538	-	VCA0783	-	arylesterase
769	 48.06	0	727580..728788	+	402	15601539	-	VCA0784	-	trans-2-enoyl-CoA reductase
770	 49.15	0	728957..730840	+	627	15601540	-	VCA0785	-	GGDEF family protein
771	 49.82	0	730966..732615	+	549	15601541	-	VCA0786	-	hypothetical protein
772	 47.62	0	732612..732716	-	34	15601542	-	VCA0787	-	hypothetical protein
773	 46.98	0	732773..733402	-	209	15601543	-	VCA0788	-	DnaJ-related protein
774	 49.32	0	733638..734225	+	195	15601544	-	VCA0789	-	hypothetical protein
775	 39.57	-1	734399..735778	+	459	15601545	-	VCA0790	-	hypothetical protein
776	 44.44	0	735771..736643	-	290	15601546	-	VCA0791	-	transposase OrfAB, subunit B
777	 43.19	0	736640..736984	-	114	15601547	-	VCA0792	-	transposase OrfAB, subunit A
778	 41.82	0	737061..737543	+	160	15601548	-	VCA0793	-	hypothetical protein
779	 40.82	-1	737544..737837	+	97	15601549	-	VCA0794	-	hypothetical protein
780	 40.33	-1	738052..739008	+	318	15601550	-	VCA0795	-	resolvase, putative
781	 32.32	-2	739095..739193	+	32	15601551	-	VCA0796	-	hypothetical protein
782	 45.10	0	739159..739464	-	101	15601552	-	VCA0797	-	hypothetical protein
783	 49.19	0	739663..740343	-	226	15601553	-	VCA0798	-	CbbY family protein
784	 48.13	0	740482..740988	-	168	15601554	-	VCA0799	-	hypothetical protein
785	 44.31	0	741310..741792	+	160	15601555	-	VCA0800	-	creA protein
786	 48.97	0	741911..743215	+	434	15601556	-	VCA0801	-	inosine-guanosine kinase
787	 44.88	0	743300..745273	-	657	15601557	-	VCA0802	-	hypothetical protein
788	 46.02	0	745355..746347	-	330	15601558	-	VCA0803	-	serine protease, putative
789	 50.65	0	746491..748482	-	663	15601559	-	VCA0804	-	ATP-dependent RNA helicase DeaD
790	 50.71	0	748796..750832	+	678	15601560	-	VCA0805	-	exoribonuclease II
791	 47.47	0	750927..751400	-	157	15601561	-	VCA0806	-	hypothetical protein
792	 46.00	0	751488..752324	+	278	15601562	-	VCA0807	-	ABC transporter, periplasmic substrate-binding protein
793	 47.33	0	752470..753162	-	230	15601563	-	VCA0808	-	NodN-related protein
794	 47.97	0	753436..754986	-	516	15601564	-	VCA0809	-	hypothetical protein
795	 44.93	0	755312..755449	-	45	15601565	-	VCA0810	-	hypothetical protein
796	 50.14	0	755480..756937	+	485	15601566	-	VCA0811	-	N-acetylglucosamine-binding protein A
797	 47.10	0	757265..758695	+	476	15601567	-	VCA0812	-	leucine aminopeptidase-related protein
798	 49.14	0	758730..760235	+	501	15601568	-	VCA0813	-	aminopeptidase
799	 50.75	0	760423..761352	-	309	15601569	-	VCA0814	-	agmatinase
800	 48.64	0	761353..763338	-	661	15601570	-	VCA0815	-	arginine decarboxylase
801	 36.05	-2	763408..763554	-	48	15601571	-	VCA0816	-	hypothetical protein
802	 47.01	0	763686..764270	+	194	15601572	-	VCA0817	-	hypothetical protein
803	 48.94	0	764273..765637	+	454	15601573	-	VCA0818	-	magnesium transporter MgtE, putative
804	 45.70	0	765822..766112	+	96	15601574	groES	VCA0819	-	co-chaperonin GroES
805	 51.48	+1	766141..767733	+	530	15601575	groEL	VCA0820	-	chaperonin GroEL
806	 51.69	+1	767766..767972	+	68	15601576	-	VCA0821	-	hypothetical protein
807	 49.61	0	768053..769477	-	474	15601577	-	VCA0822	-	aspartate kinase
808	 46.04	0	769474..769890	-	138	15601578	ectC	VCA0823	-	L-ectoine synthase
809	 50.73	0	769955..771190	-	411	15601579	-	VCA0824	-	diaminobutyrate--2-oxoglutarate aminotransferase
810	 48.66	0	771214..771735	-	173	15601580	-	VCA0825	-	L-2,4-diaminobutyric acid acetyltransferase
811	 32.48	-2	771848..771964	-	38	15601581	-	VCA0826	-	hypothetical protein
812	 43.94	0	772435..772764	-	109	15601582	phhB	VCA0827	-	pterin-4-alpha-carbinolamine dehydratase
813	 47.13	0	772754..773623	-	289	15601583	phhA	VCA0828	-	phenylalanine 4-monooxygenase
814	 48.72	0	773782..775731	+	649	15601584	-	VCA0829	-	acetoacetyl-CoA synthetase
815	 47.90	0	775834..776808	+	324	15601585	-	VCA0830	-	LysR family transcriptional regulator
816	 38.97	-1	776810..777004	+	64	15601586	-	VCA0831	-	hypothetical protein
817	 48.66	0	777308..777940	-	210	15601587	-	VCA0832	-	methyltransferase, putative
818	 46.64	0	778082..778960	+	292	15601588	-	VCA0833	-	LysR family transcriptional regulator
819	 48.53	0	779097..780050	+	317	15601589	-	VCA0834	-	hypothetical protein
820	 51.37	+1	780082..781068	-	328	15601590	-	VCA0835	-	hypothetical protein
821	 48.88	0	781106..781684	-	192	15601591	-	VCA0836	-	hexapeptide repeat-containing acetyltransferase
822	 48.25	0	781822..783135	-	437	15601592	-	VCA0837	-	hemolysin, putative
823	 47.90	0	783290..783694	-	134	15601593	-	VCA0838	-	hypothetical protein
824	 46.97	0	783716..783847	+	43	15601594	-	VCA0839	-	hypothetical protein
825	 46.91	0	784587..785072	+	161	15601595	-	VCA0840	-	deoxycytidylate deaminase, putative
826	 43.94	0	785126..785257	-	43	15601596	-	VCA0841	-	hypothetical protein
827	 45.10	0	785502..785654	-	50	15601597	-	VCA0842	-	hypothetical protein
828	 49.02	0	785728..787257	+	509	15601598	-	VCA0843	-	glyceraldehyde-3-phosphate dehydrogenase
829	 44.90	0	787373..787519	+	48	15601599	-	VCA0844	-	hypothetical protein
830	 43.27	0	787471..787782	+	103	15601600	-	VCA0845	-	hypothetical protein
831	 51.06	+1	787831..788445	-	204	15601601	-	VCA0846	-	hypothetical protein
832	 50.44	0	788631..789875	+	414	161582038	-	VCA0847	-	inner membrane protein YjeH
833	 44.95	0	789918..790898	-	326	15601603	-	VCA0848	-	GGDEF family protein
834	 50.12	0	791029..800820	-	3263	15601604	-	VCA0849	-	hypothetical protein
835	 46.56	0	801121..801906	-	261	15601605	-	VCA0850	-	response regulator
836	 46.67	0	802066..803145	-	359	15601606	-	VCA0851	-	hypothetical protein
837	 50.12	0	803146..804390	-	414	15601607	-	VCA0852	-	hypothetical protein
838	 47.72	0	804395..805138	-	247	15601608	-	VCA0853	-	hypothetical protein
839	 51.11	+1	805131..806390	-	419	15601609	-	VCA0854	-	hypothetical protein
840	 50.15	0	806378..807061	-	227	15601610	-	VCA0855	-	ABC transporter, ATP-binding protein
841	 49.40	0	807070..807741	-	223	15601611	-	VCA0856	-	hypothetical protein
842	 49.63	0	807768..807902	+	44	15601612	-	VCA0857	-	hypothetical protein
843	 45.14	0	807903..808046	+	47	15601613	-	VCA0858	-	hypothetical protein
844	 50.32	0	808054..808977	-	307	15601614	-	VCA0859	-	aldo/keto reductase family oxidoreductase
845	 51.81	+1	809269..811341	+	690	15601615	malS	VCA0860	-	periplasmic alpha-amylase precursor
846	 42.31	0	811283..811516	+	77	15601616	-	VCA0861	-	hypothetical protein
847	 50.77	+1	811876..813114	+	412	15601617	-	VCA0862	-	long-chain fatty acid transport protein
848	 49.18	0	813130..815520	+	796	15601618	-	VCA0863	-	lipase, putative
45.97	MEAN

4.79	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.