IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.97   STD DEV: 4.79
Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, complete sequence - 1..1072315
1093 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
699	 45.30	0	658175..658291	-	38	15601469	-	VCA0713	-	hypothetical protein
700	 47.06	0	658358..658714	+	118	15601470	-	VCA0714	-	diacylglycerol kinase
701	 40.25	-1	658854..659171	+	105	15601471	-	VCA0715	-	hypothetical protein
702	 46.00	0	659164..659700	+	178	15601472	-	VCA0716	-	hypothetical protein
703	 48.06	0	659756..661819	-	687	161582042	helD	VCA0717	-	DNA helicase IV
704	 51.01	+1	662006..664183	+	725	15601474	-	VCA0718	-	hypothetical protein
705	 48.63	0	664193..665140	-	315	15601475	-	VCA0719	-	sensor histide kinase
706	 46.18	0	665137..665712	-	191	15601476	-	VCA0720	-	guanylate cyclase-related protein
707	 48.08	0	665840..666151	+	103	15601477	-	VCA0721	-	hypothetical protein
708	 50.17	0	666208..666498	+	96	15601478	-	VCA0722	-	hypothetical protein
709	 54.54	+1	666528..667838	+	436	15601479	-	VCA0723	-	3-hydroxy-3-methylglutaryl CoA reductase
710	 54.04	+1	667937..669037	-	366	15601480	modC	VCA0724	-	molybdate transporter ATP-binding protein
711	 54.36	+1	669051..669749	-	232	15601481	modB	VCA0725	-	molybdate ABC transporter permease protein
712	 56.47	+2	669750..670514	-	254	15601482	-	VCA0726	-	molybdenum ABC transporter, periplasmic molybdenum-binding protein
713	 53.33	+1	670520..671974	-	484	15601483	-	VCA0727	-	cobyric acid synthase
714	 41.94	0	672577..674748	-	723	15601484	-	VCA0728	-	hypothetical protein
715	 42.31	0	674741..675364	-	207	15601485	-	VCA0729	-	hypothetical protein
716	 42.13	0	675367..677196	-	609	15601486	-	VCA0730	-	hypothetical protein
717	 45.42	0	677895..678200	-	101	15601487	-	VCA0731	-	hypothetical protein
718	 48.62	0	678403..678801	+	132	15601488	-	VCA0732	-	hypothetical protein
719	 39.87	-1	678842..678994	+	50	15601489	-	VCA0733	-	hypothetical protein
720	 47.22	0	679032..679571	+	179	15601490	-	VCA0734	-	hypothetical protein
721	 44.30	0	679770..680480	+	236	15601491	-	VCA0735	-	hypothetical protein
722	 47.16	0	680472..683045	-	857	15601492	-	VCA0736	-	sensor histidine kinase LuxQ
723	 46.48	0	683063..684157	-	364	15601493	-	VCA0737	-	luxP protein
724	 48.66	0	684369..685529	-	386	161582041	-	VCA0738	-	hypothetical protein
725	 50.33	0	685631..685936	-	101	15601495	-	VCA0739	-	hypothetical protein
726	 50.69	0	685953..686603	-	216	15601496	-	VCA0740	-	hypothetical protein
727	 43.30	0	687029..687349	+	106	15601497	-	VCA0741	-	hypothetical protein
728	 42.67	0	687349..687498	+	49	15601498	-	VCA0742	-	hypothetical protein
729	 44.84	0	687762..688013	+	83	15601499	-	VCA0743	-	hypothetical protein
730	 51.91	+1	688094..689611	-	505	15601500	glpK	VCA0744	-	glycerol kinase
731	 35.19	-2	690934..691095	-	53	15601501	-	VCA0746	-	hypothetical protein
732	 52.19	+1	691251..692894	+	547	15601502	glpA	VCA0747	-	sn-glycerol-3-phosphate dehydrogenase subunit A
733	 52.33	+1	692891..694201	+	436	15601503	-	VCA0748	-	anaerobic glycerol-3-phosphate dehydrogenase subunit B
734	 49.68	0	694198..695439	+	413	15601504	glpC	VCA0749	-	sn-glycerol-3-phosphate dehydrogenase subunit C
735	 38.89	-1	695487..695612	-	41	15601505	-	VCA0750	-	hypothetical protein
736	 51.06	+1	695581..696669	-	362	161582040	-	VCA0751	-	3-oxoacyl-(acyl carrier protein) synthase III
737	 47.82	0	696838..697272	+	144	15601507	-	VCA0752	-	thioredoxin 2
738	 51.08	+1	697461..698615	+	384	15601508	-	VCA0753	-	hypothetical protein
739	 47.89	0	698700..699530	+	276	15601509	-	VCA0754	-	lipase-related protein
740	 44.57	0	699722..700264	+	180	15601510	-	VCA0755	-	hypothetical protein
741	 46.69	0	700580..701545	+	321	15601511	-	VCA0756	-	LysR family transcriptional regulator
742	 51.72	+1	701598..702266	-	222	15601512	artM	VCA0757	-	arginine transporter permease subunit ArtM
743	 50.14	0	702263..702952	-	229	15601513	-	VCA0758	-	arginine transporter permease subunit ArtQ
744	 48.36	0	702954..703685	-	243	15601514	-	VCA0759	-	arginine ABC transporter, periplasmic arginine-binding protein
745	 50.21	0	703759..704487	-	242	161582039	artP	VCA0760	-	arginine transporter ATP-binding subunit
746	 49.49	0	704941..705039	+	32	15601516	-	VCA0761	-	hypothetical protein
747	 48.34	0	705080..706525	-	481	15601517	yieM	VCA0762	-	hypothetical protein
748	 47.44	0	706534..708192	-	552	15601518	-	VCA0763	-	hypothetical protein
749	 48.03	0	708502..709059	+	185	15601519	-	VCA0764	-	MutT/nudix family protein
750	 52.13	+1	709044..710075	+	343	15601520	-	VCA0765	-	L-allo-threonine aldolase
751	 48.75	0	710072..710512	+	146	15601521	-	VCA0766	-	cytochrome c554
752	 47.07	0	710616..711350	+	244	15601522	-	VCA0767	-	TetR family transcriptional regulator
753	 49.96	0	711450..712718	-	422	15601523	-	VCA0768	-	DEAD-box ATP dependent DNA helicase
754	 49.83	0	712755..713336	-	193	15601524	-	VCA0769	-	hypothetical protein
755	 45.83	0	713373..713492	-	39	15601525	-	VCA0770	-	hypothetical protein
756	 46.08	0	713520..713621	-	33	15601526	-	VCA0771	-	hypothetical protein
757	 49.38	0	713856..715058	+	400	15601527	-	VCA0772	-	tyrosine-specific transport protein
758	 50.63	0	715286..716707	+	473	15601528	-	VCA0773	-	methyl-accepting chemotaxis protein
759	 48.77	0	716793..717809	-	338	15601529	-	VCA0774	-	UDP-glucose 4-epimerase
760	 43.84	0	717822..718040	-	72	15601530	-	VCA0775	-	hypothetical protein
761	 50.61	0	718129..718869	+	246	15601531	-	VCA0776	-	hypothetical protein
762	 52.18	+1	718873..719583	+	236	15601532	-	VCA0777	-	hypothetical protein
763	 54.30	+1	719693..720622	+	309	15601533	-	VCA0778	-	hypothetical protein
764	 53.07	+1	720674..722107	-	477	15601534	-	VCA0779	-	hypothetical protein
765	 47.56	0	722216..723382	-	388	15601535	-	VCA0780	-	UDP-glucose 6-dehydrogenase
766	 51.80	+1	723771..726218	-	815	15601536	-	VCA0781	-	hypothetical protein
767	 50.59	0	726215..726892	-	225	15601537	-	VCA0782	-	ABC transporter, ATP-binding protein
768	 47.99	0	726843..727490	+	215	15601538	-	VCA0783	-	arylesterase
769	 48.06	0	727580..728788	+	402	15601539	-	VCA0784	-	trans-2-enoyl-CoA reductase
770	 49.15	0	728957..730840	+	627	15601540	-	VCA0785	-	GGDEF family protein
771	 49.82	0	730966..732615	+	549	15601541	-	VCA0786	-	hypothetical protein
772	 47.62	0	732612..732716	-	34	15601542	-	VCA0787	-	hypothetical protein
773	 46.98	0	732773..733402	-	209	15601543	-	VCA0788	-	DnaJ-related protein
774	 49.32	0	733638..734225	+	195	15601544	-	VCA0789	-	hypothetical protein
775	 39.57	-1	734399..735778	+	459	15601545	-	VCA0790	-	hypothetical protein
776	 44.44	0	735771..736643	-	290	15601546	-	VCA0791	-	transposase OrfAB, subunit B
777	 43.19	0	736640..736984	-	114	15601547	-	VCA0792	-	transposase OrfAB, subunit A
778	 41.82	0	737061..737543	+	160	15601548	-	VCA0793	-	hypothetical protein
779	 40.82	-1	737544..737837	+	97	15601549	-	VCA0794	-	hypothetical protein
780	 40.33	-1	738052..739008	+	318	15601550	-	VCA0795	-	resolvase, putative
781	 32.32	-2	739095..739193	+	32	15601551	-	VCA0796	-	hypothetical protein
782	 45.10	0	739159..739464	-	101	15601552	-	VCA0797	-	hypothetical protein
783	 49.19	0	739663..740343	-	226	15601553	-	VCA0798	-	CbbY family protein
784	 48.13	0	740482..740988	-	168	15601554	-	VCA0799	-	hypothetical protein
785	 44.31	0	741310..741792	+	160	15601555	-	VCA0800	-	creA protein
786	 48.97	0	741911..743215	+	434	15601556	-	VCA0801	-	inosine-guanosine kinase
787	 44.88	0	743300..745273	-	657	15601557	-	VCA0802	-	hypothetical protein
788	 46.02	0	745355..746347	-	330	15601558	-	VCA0803	-	serine protease, putative
789	 50.65	0	746491..748482	-	663	15601559	-	VCA0804	-	ATP-dependent RNA helicase DeaD
790	 50.71	0	748796..750832	+	678	15601560	-	VCA0805	-	exoribonuclease II
791	 47.47	0	750927..751400	-	157	15601561	-	VCA0806	-	hypothetical protein
792	 46.00	0	751488..752324	+	278	15601562	-	VCA0807	-	ABC transporter, periplasmic substrate-binding protein
793	 47.33	0	752470..753162	-	230	15601563	-	VCA0808	-	NodN-related protein
794	 47.97	0	753436..754986	-	516	15601564	-	VCA0809	-	hypothetical protein
795	 44.93	0	755312..755449	-	45	15601565	-	VCA0810	-	hypothetical protein
796	 50.14	0	755480..756937	+	485	15601566	-	VCA0811	-	N-acetylglucosamine-binding protein A
797	 47.10	0	757265..758695	+	476	15601567	-	VCA0812	-	leucine aminopeptidase-related protein
798	 49.14	0	758730..760235	+	501	15601568	-	VCA0813	-	aminopeptidase
45.97	MEAN

4.79	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.