IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.97   STD DEV: 4.79
Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, complete sequence - 1..1072315
1093 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
674	 47.16	0	624753..625808	+	351	15601444	fbpC	VCA0687	-	ferric transporter ATP-binding subunit
675	 46.85	0	625894..627669	-	591	15601445	-	VCA0688	-	polyhydroxyalkanoic acid synthase
676	 41.09	-1	627727..628074	-	115	15601446	-	VCA0689	-	hypothetical protein
677	 49.75	0	628104..629309	-	401	15601447	-	VCA0690	-	acetyl-CoA acetyltransferase
678	 46.69	0	629322..630062	-	246	15601448	-	VCA0691	-	acetoacetyl-CoA reductase
679	 47.96	0	631637..633475	-	612	15601449	secD	VCA0693	-	preprotein translocase subunit SecD
680	 49.78	0	633547..634002	-	151	15601450	-	VCA0694	-	hypothetical protein
681	 46.58	0	634079..634750	-	223	15601451	-	VCA0695	-	hypothetical protein
682	 31.53	-2	634785..634895	-	36	15601452	-	VCA0696	-	hypothetical protein
683	 45.26	0	635108..637036	+	642	15601453	-	VCA0697	-	sensory box/GGDEF family protein
684	 43.01	0	637033..637125	+	30	15601454	-	VCA0698	-	hypothetical protein
685	 47.22	0	637339..638562	+	407	15601455	glgC	VCA0699	-	glucose-1-phosphate adenylyltransferase
686	 51.08	+1	638828..641983	-	1051	15601456	-	VCA0700	-	chitodextrinase
687	 34.09	-2	642017..642148	-	43	15601457	-	VCA0701	-	hypothetical protein
688	 49.09	0	642655..643803	+	382	15601458	-	VCA0702	-	iron-containing alcohol dehydrogenase
689	 48.70	0	643882..644571	+	229	15601459	-	VCA0703	-	hypothetical protein
690	 49.77	0	644568..645887	-	439	15601460	-	VCA0704	-	phosphoglycerate transport system transcriptional regulatory protein PgtA
691	 48.78	0	645805..648174	-	789	15601461	-	VCA0705	-	phosphoglycerate transport regulatory protein PgtB, putative
692	 49.43	0	648171..649493	-	440	15601462	-	VCA0706	-	phosphoglycerate transport regulatory protein PgtC, putative
693	 50.51	0	649740..651119	+	459	15601463	-	VCA0707	-	regulatory protein UhpC, putative
694	 51.68	+1	651241..652701	+	486	15601464	-	VCA0708	-	pyruvate kinase
695	 50.87	+1	652820..655882	-	1020	15601465	-	VCA0709	-	sensor protein TorS
696	 50.95	+1	655805..656854	+	349	15601466	-	VCA0710	-	periplasmic sensory protein associated with the TorRS two-component regulatory system
697	 49.12	0	656909..657364	+	151	15601467	mgsA	VCA0711	-	methylglyoxal synthase
698	 49.60	0	657433..658053	-	206	15601468	-	VCA0712	-	pyrazinamidase/nicotinamidase
699	 45.30	0	658175..658291	-	38	15601469	-	VCA0713	-	hypothetical protein
700	 47.06	0	658358..658714	+	118	15601470	-	VCA0714	-	diacylglycerol kinase
701	 40.25	-1	658854..659171	+	105	15601471	-	VCA0715	-	hypothetical protein
702	 46.00	0	659164..659700	+	178	15601472	-	VCA0716	-	hypothetical protein
703	 48.06	0	659756..661819	-	687	161582042	helD	VCA0717	-	DNA helicase IV
704	 51.01	+1	662006..664183	+	725	15601474	-	VCA0718	-	hypothetical protein
705	 48.63	0	664193..665140	-	315	15601475	-	VCA0719	-	sensor histide kinase
706	 46.18	0	665137..665712	-	191	15601476	-	VCA0720	-	guanylate cyclase-related protein
707	 48.08	0	665840..666151	+	103	15601477	-	VCA0721	-	hypothetical protein
708	 50.17	0	666208..666498	+	96	15601478	-	VCA0722	-	hypothetical protein
709	 54.54	+1	666528..667838	+	436	15601479	-	VCA0723	-	3-hydroxy-3-methylglutaryl CoA reductase
710	 54.04	+1	667937..669037	-	366	15601480	modC	VCA0724	-	molybdate transporter ATP-binding protein
711	 54.36	+1	669051..669749	-	232	15601481	modB	VCA0725	-	molybdate ABC transporter permease protein
712	 56.47	+2	669750..670514	-	254	15601482	-	VCA0726	-	molybdenum ABC transporter, periplasmic molybdenum-binding protein
713	 53.33	+1	670520..671974	-	484	15601483	-	VCA0727	-	cobyric acid synthase
714	 41.94	0	672577..674748	-	723	15601484	-	VCA0728	-	hypothetical protein
715	 42.31	0	674741..675364	-	207	15601485	-	VCA0729	-	hypothetical protein
716	 42.13	0	675367..677196	-	609	15601486	-	VCA0730	-	hypothetical protein
717	 45.42	0	677895..678200	-	101	15601487	-	VCA0731	-	hypothetical protein
718	 48.62	0	678403..678801	+	132	15601488	-	VCA0732	-	hypothetical protein
719	 39.87	-1	678842..678994	+	50	15601489	-	VCA0733	-	hypothetical protein
720	 47.22	0	679032..679571	+	179	15601490	-	VCA0734	-	hypothetical protein
721	 44.30	0	679770..680480	+	236	15601491	-	VCA0735	-	hypothetical protein
722	 47.16	0	680472..683045	-	857	15601492	-	VCA0736	-	sensor histidine kinase LuxQ
723	 46.48	0	683063..684157	-	364	15601493	-	VCA0737	-	luxP protein
724	 48.66	0	684369..685529	-	386	161582041	-	VCA0738	-	hypothetical protein
725	 50.33	0	685631..685936	-	101	15601495	-	VCA0739	-	hypothetical protein
726	 50.69	0	685953..686603	-	216	15601496	-	VCA0740	-	hypothetical protein
727	 43.30	0	687029..687349	+	106	15601497	-	VCA0741	-	hypothetical protein
728	 42.67	0	687349..687498	+	49	15601498	-	VCA0742	-	hypothetical protein
729	 44.84	0	687762..688013	+	83	15601499	-	VCA0743	-	hypothetical protein
730	 51.91	+1	688094..689611	-	505	15601500	glpK	VCA0744	-	glycerol kinase
731	 35.19	-2	690934..691095	-	53	15601501	-	VCA0746	-	hypothetical protein
732	 52.19	+1	691251..692894	+	547	15601502	glpA	VCA0747	-	sn-glycerol-3-phosphate dehydrogenase subunit A
733	 52.33	+1	692891..694201	+	436	15601503	-	VCA0748	-	anaerobic glycerol-3-phosphate dehydrogenase subunit B
734	 49.68	0	694198..695439	+	413	15601504	glpC	VCA0749	-	sn-glycerol-3-phosphate dehydrogenase subunit C
735	 38.89	-1	695487..695612	-	41	15601505	-	VCA0750	-	hypothetical protein
736	 51.06	+1	695581..696669	-	362	161582040	-	VCA0751	-	3-oxoacyl-(acyl carrier protein) synthase III
737	 47.82	0	696838..697272	+	144	15601507	-	VCA0752	-	thioredoxin 2
738	 51.08	+1	697461..698615	+	384	15601508	-	VCA0753	-	hypothetical protein
739	 47.89	0	698700..699530	+	276	15601509	-	VCA0754	-	lipase-related protein
740	 44.57	0	699722..700264	+	180	15601510	-	VCA0755	-	hypothetical protein
741	 46.69	0	700580..701545	+	321	15601511	-	VCA0756	-	LysR family transcriptional regulator
742	 51.72	+1	701598..702266	-	222	15601512	artM	VCA0757	-	arginine transporter permease subunit ArtM
743	 50.14	0	702263..702952	-	229	15601513	-	VCA0758	-	arginine transporter permease subunit ArtQ
744	 48.36	0	702954..703685	-	243	15601514	-	VCA0759	-	arginine ABC transporter, periplasmic arginine-binding protein
745	 50.21	0	703759..704487	-	242	161582039	artP	VCA0760	-	arginine transporter ATP-binding subunit
746	 49.49	0	704941..705039	+	32	15601516	-	VCA0761	-	hypothetical protein
747	 48.34	0	705080..706525	-	481	15601517	yieM	VCA0762	-	hypothetical protein
748	 47.44	0	706534..708192	-	552	15601518	-	VCA0763	-	hypothetical protein
749	 48.03	0	708502..709059	+	185	15601519	-	VCA0764	-	MutT/nudix family protein
750	 52.13	+1	709044..710075	+	343	15601520	-	VCA0765	-	L-allo-threonine aldolase
751	 48.75	0	710072..710512	+	146	15601521	-	VCA0766	-	cytochrome c554
752	 47.07	0	710616..711350	+	244	15601522	-	VCA0767	-	TetR family transcriptional regulator
753	 49.96	0	711450..712718	-	422	15601523	-	VCA0768	-	DEAD-box ATP dependent DNA helicase
754	 49.83	0	712755..713336	-	193	15601524	-	VCA0769	-	hypothetical protein
755	 45.83	0	713373..713492	-	39	15601525	-	VCA0770	-	hypothetical protein
756	 46.08	0	713520..713621	-	33	15601526	-	VCA0771	-	hypothetical protein
757	 49.38	0	713856..715058	+	400	15601527	-	VCA0772	-	tyrosine-specific transport protein
758	 50.63	0	715286..716707	+	473	15601528	-	VCA0773	-	methyl-accepting chemotaxis protein
759	 48.77	0	716793..717809	-	338	15601529	-	VCA0774	-	UDP-glucose 4-epimerase
760	 43.84	0	717822..718040	-	72	15601530	-	VCA0775	-	hypothetical protein
761	 50.61	0	718129..718869	+	246	15601531	-	VCA0776	-	hypothetical protein
762	 52.18	+1	718873..719583	+	236	15601532	-	VCA0777	-	hypothetical protein
763	 54.30	+1	719693..720622	+	309	15601533	-	VCA0778	-	hypothetical protein
764	 53.07	+1	720674..722107	-	477	15601534	-	VCA0779	-	hypothetical protein
765	 47.56	0	722216..723382	-	388	15601535	-	VCA0780	-	UDP-glucose 6-dehydrogenase
766	 51.80	+1	723771..726218	-	815	15601536	-	VCA0781	-	hypothetical protein
767	 50.59	0	726215..726892	-	225	15601537	-	VCA0782	-	ABC transporter, ATP-binding protein
768	 47.99	0	726843..727490	+	215	15601538	-	VCA0783	-	arylesterase
769	 48.06	0	727580..728788	+	402	15601539	-	VCA0784	-	trans-2-enoyl-CoA reductase
770	 49.15	0	728957..730840	+	627	15601540	-	VCA0785	-	GGDEF family protein
771	 49.82	0	730966..732615	+	549	15601541	-	VCA0786	-	hypothetical protein
772	 47.62	0	732612..732716	-	34	15601542	-	VCA0787	-	hypothetical protein
773	 46.98	0	732773..733402	-	209	15601543	-	VCA0788	-	DnaJ-related protein
45.97	MEAN

4.79	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.