IslandPathversion 1.0

IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No rRNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.97 STD DEV: 4.79
Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, complete sequence - 1..1072315
1093 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
607	 43.90	0	554224..554592	+	122	15601377	-	VCA0619	-	hypothetical protein
608	 51.14	+1	554614..555444	+	276	15601378	-	VCA0620	-	thiosulfate sulfurtransferase SseA, putative
609	 51.00	+1	555529..556524	-	331	15601379	-	VCA0621	-	SorC family transcriptional regulator
610	 52.25	+1	556523..556633	+	36	15601380	-	VCA0622	-	hypothetical protein
611	 49.74	0	557117..558067	+	316	15601381	-	VCA0623	-	transaldolase B
612	 52.86	+1	558116..560158	+	680	15601382	-	VCA0624	-	transketolase
613	 47.52	0	560275..562629	-	784	15601383	-	VCA0625	-	TonB receptor-related protein
614	 39.05	-1	562599..562703	+	34	15601384	-	VCA0626	-	hypothetical protein
615	 50.88	+1	562843..563355	+	170	15601385	-	VCA0627	-	rRNA methylase, putative
616	 32.41	-2	563793..565967	+	724	15601386	-	VCA0628	-	SecA-related protein
617	 52.64	+1	566238..567278	-	346	15601387	-	VCA0629	-	hypothetical protein
618	 51.23	+1	567291..568262	-	323	15601388	-	VCA0630	-	D-3-phosphoglycerate dehydrogenase-related protein
619	 50.39	0	568278..568793	-	171	15601389	-	VCA0631	-	hypothetical protein
620	 51.78	+1	568826..569275	-	149	15601390	-	VCA0632	-	MutT/nudix family protein
621	 49.29	0	569315..569665	-	116	15601391	-	VCA0633	-	glpM protein
622	 52.20	+1	569857..570582	+	241	15601392	-	VCA0634	-	hypothetical protein
623	 51.38	+1	570592..571533	+	313	15601393	-	VCA0635	-	LysR family transcriptional regulator
624	 49.48	0	571530..571820	-	96	15601394	-	VCA0636	-	hypothetical protein
625	 49.69	0	571824..572477	-	217	15601395	-	VCA0637	-	dihydropteridine reductase
626	 51.53	+1	572693..575896	-	1067	15601396	-	VCA0638	-	AcrB/AcrD/AcrF family transporter
627	 52.34	+1	575853..576857	-	334	15601397	-	VCA0639	-	AcrA/AcrE family protein
628	 47.53	0	576967..577431	-	154	15601398	-	VCA0640	-	hypothetical protein
629	 51.19	+1	577436..577855	-	139	15601399	-	VCA0641	-	hypothetical protein
630	 47.80	0	577872..578189	-	105	15601400	-	VCA0642	-	ArsR family transcriptional regulator
631	 40.45	-1	578263..578529	+	88	15601401	-	VCA0643	-	hypothetical protein
632	 50.47	0	578595..580298	+	567	15601402	-	VCA0644	-	NADH oxidase, putative
633	 45.14	0	580391..580771	-	126	15601403	-	VCA0645	-	hypothetical protein
634	 49.23	0	580887..582704	-	605	15601404	-	VCA0646	-	hemolysin, putative
635	 47.87	0	582629..583075	-	148	15601405	-	VCA0647	-	hypothetical protein
636	 50.07	0	583086..583832	-	248	15601406	-	VCA0648	-	hypothetical protein
637	 50.09	0	583832..584374	-	180	15601407	-	VCA0649	-	hypothetical protein
638	 51.45	+1	584463..585599	-	378	15601408	-	VCA0650	-	hypothetical protein
639	 48.80	0	585596..586177	-	193	15601409	-	VCA0651	-	hypothetical protein
640	 46.80	0	586449..586886	+	145	15601410	-	VCA0652	-	hypothetical protein
641	 49.58	0	587052..588491	-	479	15601411	-	VCA0653	-	PTS system, sucrose-specific IIBC component
642	 47.03	0	588792..589784	+	330	15601412	-	VCA0654	-	sucrose operon repressor ScrR, putative
643	 50.58	0	589860..591506	+	548	15601413	-	VCA0655	-	sucrose-6-phosphate dehydrogenase
644	 50.62	0	591628..592599	-	323	15601414	-	VCA0656	-	aminoimidazole riboside kinase
645	 48.41	0	592946..594484	+	512	15601415	glpD	VCA0657	-	glycerol-3-phosphate dehydrogenase
646	 50.03	0	594586..596196	-	536	15601416	-	VCA0658	-	methyl-accepting chemotaxis protein
647	 49.04	0	596382..597005	-	207	15601417	-	VCA0659	-	protein F-related protein
648	 34.15	-2	597006..597128	-	40	15601418	-	VCA0660	-	hypothetical protein
649	 47.26	0	597218..597691	+	157	15601419	-	VCA0661	-	peptidyl-prolyl cis-trans isomerase-related protein
650	 48.36	0	597772..598410	-	212	15601420	-	VCA0662	-	CbbY family protein
651	 46.15	0	598557..600320	+	587	15601421	-	VCA0663	-	methyl-accepting chemotaxis protein
652	 48.68	0	600261..600449	-	62	15601422	-	VCA0664	-	hypothetical protein
653	 49.06	0	600714..602093	+	459	15601423	dcuC	VCA0665	-	C4-dicarboxylate transporter DcuC
654	 48.99	0	602191..603621	-	476	15601424	-	VCA0666	-	L-serine dehydratase 1
655	 42.09	0	603572..605113	-	513	15601425	-	VCA0667	-	sodium/solute symporter
656	 37.04	-1	605152..605259	-	35	15601426	-	VCA0668	-	hypothetical protein
657	 46.84	0	605452..606747	+	431	15601427	-	VCA0669	-	sugar transporter family protein
658	 43.59	0	606706..606861	-	51	15601428	-	VCA0670	-	hypothetical protein
659	 44.84	0	606844..607860	+	338	15601429	-	VCA0671	-	hypothetical protein
660	 34.23	-2	607960..608070	+	36	15601430	-	VCA0672	-	hypothetical protein
661	 43.70	0	608100..609131	+	343	15601431	-	VCA0673	-	LacI family transcription regulator
662	 47.60	0	609797..611548	-	583	15601432	-	VCA0675	-	nitrate/nitrite sensor protein NarQ
663	 53.65	+1	611706..612212	+	168	15601433	-	VCA0676	-	iron-sulfur cluster-binding protein NapF
664	 45.32	0	612218..612559	+	113	15601434	-	VCA0677	-	napD protein
665	 51.49	+1	612556..615045	+	829	15601435	-	VCA0678	-	nitrate reductase
666	 50.58	0	615052..615567	+	171	15601436	-	VCA0679	-	periplasmic nitrate reductase, cytochrome c-type protein
667	 50.69	0	615585..616160	+	191	15601437	-	VCA0680	-	periplasmic nitrate reductase, cytochrome c-type protein
668	 47.76	0	616344..617639	-	431	15601438	-	VCA0681	-	hypothetical protein
669	 47.05	0	617798..618424	+	208	15601439	-	VCA0682	-	transcriptional regulator UhpA
670	 48.80	0	618427..620010	+	527	15601440	-	VCA0683	-	sensor protein UhpB
671	 49.66	0	620078..621388	+	436	15601441	-	VCA0684	-	regulatory protein UhpC
672	 48.50	0	621501..622535	+	344	15601442	-	VCA0685	-	iron(III) ABC transporter, periplasmic iron-compound-binding protein
673	 49.55	0	622639..624741	+	700	15601443	-	VCA0686	-	iron(III) ABC transporter, permease protein
674	 47.16	0	624753..625808	+	351	15601444	fbpC	VCA0687	-	ferric transporter ATP-binding subunit
675	 46.85	0	625894..627669	-	591	15601445	-	VCA0688	-	polyhydroxyalkanoic acid synthase
676	 41.09	-1	627727..628074	-	115	15601446	-	VCA0689	-	hypothetical protein
677	 49.75	0	628104..629309	-	401	15601447	-	VCA0690	-	acetyl-CoA acetyltransferase
678	 46.69	0	629322..630062	-	246	15601448	-	VCA0691	-	acetoacetyl-CoA reductase
679	 47.96	0	631637..633475	-	612	15601449	secD	VCA0693	-	preprotein translocase subunit SecD
680	 49.78	0	633547..634002	-	151	15601450	-	VCA0694	-	hypothetical protein
681	 46.58	0	634079..634750	-	223	15601451	-	VCA0695	-	hypothetical protein
682	 31.53	-2	634785..634895	-	36	15601452	-	VCA0696	-	hypothetical protein
683	 45.26	0	635108..637036	+	642	15601453	-	VCA0697	-	sensory box/GGDEF family protein
684	 43.01	0	637033..637125	+	30	15601454	-	VCA0698	-	hypothetical protein
685	 47.22	0	637339..638562	+	407	15601455	glgC	VCA0699	-	glucose-1-phosphate adenylyltransferase
686	 51.08	+1	638828..641983	-	1051	15601456	-	VCA0700	-	chitodextrinase
687	 34.09	-2	642017..642148	-	43	15601457	-	VCA0701	-	hypothetical protein
688	 49.09	0	642655..643803	+	382	15601458	-	VCA0702	-	iron-containing alcohol dehydrogenase
689	 48.70	0	643882..644571	+	229	15601459	-	VCA0703	-	hypothetical protein
690	 49.77	0	644568..645887	-	439	15601460	-	VCA0704	-	phosphoglycerate transport system transcriptional regulatory protein PgtA
691	 48.78	0	645805..648174	-	789	15601461	-	VCA0705	-	phosphoglycerate transport regulatory protein PgtB, putative
692	 49.43	0	648171..649493	-	440	15601462	-	VCA0706	-	phosphoglycerate transport regulatory protein PgtC, putative
693	 50.51	0	649740..651119	+	459	15601463	-	VCA0707	-	regulatory protein UhpC, putative
694	 51.68	+1	651241..652701	+	486	15601464	-	VCA0708	-	pyruvate kinase
695	 50.87	+1	652820..655882	-	1020	15601465	-	VCA0709	-	sensor protein TorS
696	 50.95	+1	655805..656854	+	349	15601466	-	VCA0710	-	periplasmic sensory protein associated with the TorRS two-component regulatory system
697	 49.12	0	656909..657364	+	151	15601467	mgsA	VCA0711	-	methylglyoxal synthase
698	 49.60	0	657433..658053	-	206	15601468	-	VCA0712	-	pyrazinamidase/nicotinamidase
699	 45.30	0	658175..658291	-	38	15601469	-	VCA0713	-	hypothetical protein
700	 47.06	0	658358..658714	+	118	15601470	-	VCA0714	-	diacylglycerol kinase
701	 40.25	-1	658854..659171	+	105	15601471	-	VCA0715	-	hypothetical protein
702	 46.00	0	659164..659700	+	178	15601472	-	VCA0716	-	hypothetical protein
703	 48.06	0	659756..661819	-	687	161582042	helD	VCA0717	-	DNA helicase IV
704	 51.01	+1	662006..664183	+	725	15601474	-	VCA0718	-	hypothetical protein
705	 48.63	0	664193..665140	-	315	15601475	-	VCA0719	-	sensor histide kinase
706	 46.18	0	665137..665712	-	191	15601476	-	VCA0720	-	guanylate cyclase-related protein
45.97	MEAN

4.79	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.