IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.97   STD DEV: 4.79
Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, complete sequence - 1..1072315
1093 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
557	 43.53	0	506332..507498	+	388	15601327	-	VCA0568	-	hypothetical protein
558	 44.44	0	507539..507700	+	53	15601328	-	VCA0569	-	hypothetical protein
559	 41.99	0	508285..508596	-	103	15601329	-	VCA0570	-	translation initiation factor Sui1
560	 41.67	0	508604..508987	-	127	15601330	-	VCA0571	-	hypothetical protein
561	 42.49	0	509159..510163	-	334	15601331	ddl	VCA0572	-	D-alanyl-alanine synthetase A
562	 45.75	0	510314..510901	-	195	15601332	-	VCA0573	-	DamX-related protein
563	 46.20	0	511108..513789	+	893	15601333	-	VCA0574	-	hypothetical protein
564	 48.09	0	513839..514726	-	295	15601334	-	VCA0575	-	LysR family transcriptional regulator
565	 37.77	-1	514944..517040	+	698	15601335	-	VCA0576	-	heme transport protein HutA
566	 38.89	-1	517156..517263	+	35	15601336	-	VCA0577	-	hypothetical protein
567	 48.00	0	517364..519061	-	565	15601337	-	VCA0578	-	hypothetical protein
568	 49.57	0	519142..519375	-	77	15601338	-	VCA0579	-	hypothetical protein
569	 46.09	0	519376..519963	-	195	15601339	-	VCA0580	-	hypothetical protein
570	 48.36	0	519996..520787	+	263	15601340	-	VCA0581	-	hypothetical protein
571	 44.10	0	520899..521381	-	160	15601341	-	VCA0582	-	hypothetical protein
572	 47.58	0	521497..522282	+	261	15601342	-	VCA0583	-	hypothetical protein
573	 48.28	0	522368..523036	-	222	15601343	-	VCA0584	-	glutathione S-transferase, putative
574	 45.10	0	523048..523659	-	203	15601344	-	VCA0585	-	glutathione S-transferase, putative
575	 47.24	0	523761..524357	+	198	15601345	-	VCA0586	-	hypothetical protein
576	 48.85	0	524354..524746	+	130	15601346	-	VCA0587	-	hypothetical protein
577	 50.60	0	524830..526422	-	530	15601347	-	VCA0588	-	peptide ABC transporter, ATP-binding protein, putative
578	 48.73	0	526419..527477	-	352	15601348	-	VCA0589	-	peptide ABC transporter, permease protein, putative
579	 47.37	0	527474..528556	-	360	15601349	-	VCA0590	-	peptide ABC transporter, permease protein, putative
580	 48.53	0	528565..530400	-	611	15601350	-	VCA0591	-	peptide ABC transporter, periplasmic peptide-binding protein, putative
581	 47.24	0	530597..531157	-	186	15601351	-	VCA0592	-	MutT/nudix family protein
582	 45.87	0	531211..532143	-	310	15601352	-	VCA0593	-	hypothetical protein
583	 46.81	0	532353..532634	+	93	15601353	-	VCA0594	-	hemolysin
584	 48.22	0	532716..533669	-	317	15601354	-	VCA0595	-	hypothetical protein
585	 49.29	0	535080..535361	+	93	15601355	-	VCA0597	-	hypothetical protein
586	 47.97	0	535373..535495	-	40	15601356	-	VCA0598	-	hypothetical protein
587	 50.11	0	535461..536366	-	301	15601357	-	VCA0599	-	hypothetical protein
588	 49.93	0	536432..537136	-	234	15601358	-	VCA0600	-	repressor protein PhnR, putative
589	 51.43	+1	537161..538939	-	592	15601359	-	VCA0601	-	ABC transporter, permease protein
590	 48.76	0	538872..540083	-	403	15601360	-	VCA0602	-	ABC transporter, ATP-binding protein
591	 48.53	0	540239..541258	-	339	15601361	-	VCA0603	-	ABC transporter, periplasmic substrate-binding protein
592	 50.45	0	541490..542593	+	367	15601362	-	VCA0604	-	2-aminoethylphosphonate--pyruvate transaminase
593	 50.21	0	542611..544008	+	465	15601363	-	VCA0605	-	4-aminobutyrate aminotransferase
594	 52.82	+1	544015..544830	+	271	15601364	-	VCA0606	-	phosphonoacetaldehyde hydrolase
595	 48.77	0	544995..545402	+	135	15601365	-	VCA0607	-	nucleoside diphosphate kinase regulator
596	 46.96	0	545462..546136	-	224	15601366	-	VCA0608	-	nucleotidase
597	 49.73	0	546331..546513	+	60	15601367	-	VCA0609	-	hypothetical protein
598	 51.15	+1	546518..547168	+	216	15601368	-	VCA0610	-	isoprenoid biosynthesis protein
599	 42.75	0	547305..547442	+	45	15601369	-	VCA0611	-	hypothetical protein
600	 44.28	0	547439..547849	+	136	15601370	mscL	VCA0612	-	large-conductance mechanosensitive channel
601	 41.23	0	547882..547995	+	37	15601371	-	VCA0613	-	hypothetical protein
602	 51.89	+1	548029..549828	+	599	15601372	-	VCA0614	-	formate--tetrahydrofolate ligase
603	 47.09	0	549956..551140	+	394	15601373	-	VCA0615	-	bifunctional methionine sulfoxide reductase A/B protein
604	 50.36	0	551233..551925	-	230	15601374	folE	VCA0616	-	GTP cyclohydrolase I
605	 53.21	+1	551966..553273	+	435	15601375	-	VCA0617	-	molybdopterin biosynthesis MoeA protein
606	 51.90	+1	553276..554040	+	254	15601376	-	VCA0618	-	molybdopterin biosynthesis protein MoeB
607	 43.90	0	554224..554592	+	122	15601377	-	VCA0619	-	hypothetical protein
608	 51.14	+1	554614..555444	+	276	15601378	-	VCA0620	-	thiosulfate sulfurtransferase SseA, putative
609	 51.00	+1	555529..556524	-	331	15601379	-	VCA0621	-	SorC family transcriptional regulator
610	 52.25	+1	556523..556633	+	36	15601380	-	VCA0622	-	hypothetical protein
611	 49.74	0	557117..558067	+	316	15601381	-	VCA0623	-	transaldolase B
612	 52.86	+1	558116..560158	+	680	15601382	-	VCA0624	-	transketolase
613	 47.52	0	560275..562629	-	784	15601383	-	VCA0625	-	TonB receptor-related protein
614	 39.05	-1	562599..562703	+	34	15601384	-	VCA0626	-	hypothetical protein
615	 50.88	+1	562843..563355	+	170	15601385	-	VCA0627	-	rRNA methylase, putative
616	 32.41	-2	563793..565967	+	724	15601386	-	VCA0628	-	SecA-related protein
617	 52.64	+1	566238..567278	-	346	15601387	-	VCA0629	-	hypothetical protein
618	 51.23	+1	567291..568262	-	323	15601388	-	VCA0630	-	D-3-phosphoglycerate dehydrogenase-related protein
619	 50.39	0	568278..568793	-	171	15601389	-	VCA0631	-	hypothetical protein
620	 51.78	+1	568826..569275	-	149	15601390	-	VCA0632	-	MutT/nudix family protein
621	 49.29	0	569315..569665	-	116	15601391	-	VCA0633	-	glpM protein
622	 52.20	+1	569857..570582	+	241	15601392	-	VCA0634	-	hypothetical protein
623	 51.38	+1	570592..571533	+	313	15601393	-	VCA0635	-	LysR family transcriptional regulator
624	 49.48	0	571530..571820	-	96	15601394	-	VCA0636	-	hypothetical protein
625	 49.69	0	571824..572477	-	217	15601395	-	VCA0637	-	dihydropteridine reductase
626	 51.53	+1	572693..575896	-	1067	15601396	-	VCA0638	-	AcrB/AcrD/AcrF family transporter
627	 52.34	+1	575853..576857	-	334	15601397	-	VCA0639	-	AcrA/AcrE family protein
628	 47.53	0	576967..577431	-	154	15601398	-	VCA0640	-	hypothetical protein
629	 51.19	+1	577436..577855	-	139	15601399	-	VCA0641	-	hypothetical protein
630	 47.80	0	577872..578189	-	105	15601400	-	VCA0642	-	ArsR family transcriptional regulator
631	 40.45	-1	578263..578529	+	88	15601401	-	VCA0643	-	hypothetical protein
632	 50.47	0	578595..580298	+	567	15601402	-	VCA0644	-	NADH oxidase, putative
633	 45.14	0	580391..580771	-	126	15601403	-	VCA0645	-	hypothetical protein
634	 49.23	0	580887..582704	-	605	15601404	-	VCA0646	-	hemolysin, putative
635	 47.87	0	582629..583075	-	148	15601405	-	VCA0647	-	hypothetical protein
636	 50.07	0	583086..583832	-	248	15601406	-	VCA0648	-	hypothetical protein
637	 50.09	0	583832..584374	-	180	15601407	-	VCA0649	-	hypothetical protein
638	 51.45	+1	584463..585599	-	378	15601408	-	VCA0650	-	hypothetical protein
639	 48.80	0	585596..586177	-	193	15601409	-	VCA0651	-	hypothetical protein
640	 46.80	0	586449..586886	+	145	15601410	-	VCA0652	-	hypothetical protein
641	 49.58	0	587052..588491	-	479	15601411	-	VCA0653	-	PTS system, sucrose-specific IIBC component
642	 47.03	0	588792..589784	+	330	15601412	-	VCA0654	-	sucrose operon repressor ScrR, putative
643	 50.58	0	589860..591506	+	548	15601413	-	VCA0655	-	sucrose-6-phosphate dehydrogenase
644	 50.62	0	591628..592599	-	323	15601414	-	VCA0656	-	aminoimidazole riboside kinase
645	 48.41	0	592946..594484	+	512	15601415	glpD	VCA0657	-	glycerol-3-phosphate dehydrogenase
646	 50.03	0	594586..596196	-	536	15601416	-	VCA0658	-	methyl-accepting chemotaxis protein
647	 49.04	0	596382..597005	-	207	15601417	-	VCA0659	-	protein F-related protein
648	 34.15	-2	597006..597128	-	40	15601418	-	VCA0660	-	hypothetical protein
649	 47.26	0	597218..597691	+	157	15601419	-	VCA0661	-	peptidyl-prolyl cis-trans isomerase-related protein
650	 48.36	0	597772..598410	-	212	15601420	-	VCA0662	-	CbbY family protein
651	 46.15	0	598557..600320	+	587	15601421	-	VCA0663	-	methyl-accepting chemotaxis protein
652	 48.68	0	600261..600449	-	62	15601422	-	VCA0664	-	hypothetical protein
653	 49.06	0	600714..602093	+	459	15601423	dcuC	VCA0665	-	C4-dicarboxylate transporter DcuC
654	 48.99	0	602191..603621	-	476	15601424	-	VCA0666	-	L-serine dehydratase 1
655	 42.09	0	603572..605113	-	513	15601425	-	VCA0667	-	sodium/solute symporter
656	 37.04	-1	605152..605259	-	35	15601426	-	VCA0668	-	hypothetical protein
45.97	MEAN

4.79	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.