IslandPathversion 1.0

IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No rRNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.97 STD DEV: 4.79
Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, complete sequence - 1..1072315
1093 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
467	 40.82	-1	419373..419786	+	137	15601237	-	VCA0476	-	hypothetical protein
468	 41.03	-1	419979..420251	+	90	15601238	-	VCA0477	-	hypothetical protein
469	 42.96	0	420238..420528	+	96	15601239	-	VCA0478	-	hypothetical protein
470	 39.25	-1	420656..421111	+	151	15601240	-	VCA0479	-	acetyltransferase, putative
471	 43.14	0	421433..421585	+	50	15601241	-	VCA0480	-	hypothetical protein
472	 43.37	0	421787..422284	-	165	15601242	-	VCA0481	-	hypothetical protein
473	 42.49	0	422281..422553	-	90	15601243	-	VCA0482	-	hypothetical protein
474	 38.12	-1	422784..423452	+	222	15601244	-	VCA0483	-	hypothetical protein
475	 34.38	-2	423604..423891	+	95	15601245	-	VCA0484	-	hypothetical protein
476	 39.25	-1	424032..424403	+	123	15601246	-	VCA0485	-	mazG-related protein
477	 42.72	0	424470..424895	+	141	15601247	-	VCA0486	-	hypothetical protein
478	 42.13	0	424892..425425	+	177	15601248	-	VCA0487	-	hypothetical protein
479	 42.64	0	425627..425884	+	85	15601249	-	VCA0488	-	hypothetical protein
480	 43.89	0	425872..426174	+	100	15601250	-	VCA0489	-	hypothetical protein
481	 40.53	-1	426312..427325	+	337	15601251	-	VCA0490	-	GDXG family lipase
482	 38.19	-1	427398..427871	+	157	15601252	-	VCA0491	-	hypothetical protein
483	 39.04	-1	428335..428772	+	145	15601253	-	VCA0493	-	IS1004 transposase
484	 38.98	-1	428878..429054	+	58	15601254	-	VCA0494	-	hypothetical protein
485	 40.78	-1	429229..430101	+	290	15601255	-	VCA0495	-	hypothetical protein
486	 40.53	-1	430170..430850	+	226	15601256	-	VCA0496	-	glutathione S-transferase, putative
487	 38.04	-1	431036..431311	+	91	15601257	-	VCA0497	-	hypothetical protein
488	 44.44	0	431305..431826	+	173	15601258	-	VCA0498	-	hypothetical protein
489	 37.58	-1	431958..432122	-	54	15601259	-	VCA0499	-	hypothetical protein
490	 49.02	0	432119..432220	-	33	15601260	-	VCA0500	-	hypothetical protein
491	 38.64	-1	432501..432896	+	131	15601261	-	VCA0501	-	hypothetical protein
492	 42.03	0	432953..433090	+	45	15601262	-	VCA0502	-	hypothetical protein
493	 38.71	-1	433035..433313	-	92	15601263	-	VCA0503	-	hypothetical protein
494	 44.72	0	433310..433678	-	122	15601264	-	VCA0504	-	relB protein
495	 40.07	-1	433710..434303	+	197	15601265	-	VCA0505	-	acetyltransferase, putative
496	 41.55	0	434487..434900	+	137	15601266	-	VCA0506	-	hypothetical protein
497	 43.19	0	435419..435763	+	114	15601267	-	VCA0507	-	transposase OrfAB, subunit A
498	 44.44	0	435760..436632	+	290	15601268	-	VCA0508	-	transposase OrfAB, subunit B
499	 41.67	0	436670..436789	-	39	15601269	-	VCA0509	-	hypothetical protein
500	 44.86	0	436922..439828	+	968	15601270	-	VCA0510	-	hypothetical protein
501	 46.39	0	440291..442411	+	706	15601271	-	VCA0511	-	anaerobic ribonucleoside triphosphate reductase
502	 48.08	0	442416..442883	+	155	15601272	nrdG	VCA0512	-	anaerobic ribonucleotide reductase-activating protein
503	 48.31	0	443005..444186	+	393	161582043	-	VCA0513	-	aromatic amino acid aminotransferase
504	 48.25	0	444244..444927	+	227	15601274	-	VCA0514	-	hypothetical protein
505	 37.61	-1	445007..445123	-	38	15601275	-	VCA0515	-	hypothetical protein
506	 51.29	+1	445161..446903	-	580	15601276	-	VCA0516	-	PTS system, fructose-specific IIBC component
507	 50.42	0	446916..447869	-	317	15601277	-	VCA0517	-	1-phosphofructokinase
508	 50.37	0	447880..449082	-	400	15601278	-	VCA0518	-	bifunctional fructose-specific PTS IIA/HPr protein
509	 49.44	0	449421..450401	+	326	15601279	-	VCA0519	-	DNA-binding transcriptional regulator FruR
510	 50.09	0	450455..451594	+	379	15601280	-	VCA0520	-	exonuclease SbcD, putative
511	 49.38	0	451596..454637	+	1013	15601281	-	VCA0521	-	exonuclease SbcC, putative
512	 43.72	0	454734..456794	+	686	15601282	-	VCA0522	-	sensor histidine kinase/response regulator LuxN
513	 40.60	-1	457023..458192	-	389	15601283	-	VCA0523	-	hypothetical protein
514	 47.35	0	458389..459351	-	320	15601284	-	VCA0524	-	hypothetical protein
515	 37.14	-1	459328..459432	+	34	15601285	-	VCA0525	-	hypothetical protein
516	 48.26	0	459498..460904	-	468	15601286	-	VCA0526	-	chloride channel protein
517	 47.58	0	461371..462360	+	329	15601287	-	VCA0527	-	hypothetical protein
518	 48.78	0	462424..463368	-	314	15601288	rbgA	VCA0528	-	ribosomal biogenesis GTPase
519	 48.95	0	463691..465553	+	620	15601289	-	VCA0529	-	potassium uptake protein, Kup system
520	 51.67	+1	465651..468890	-	1079	15601290	-	VCA0530	-	pyruvate-flavoredoxin oxidoreductase
521	 49.06	0	468993..470486	+	497	15601291	-	VCA0531	-	sensor histidine kinase
522	 47.19	0	470476..471168	+	230	15601292	-	VCA0532	-	DNA-binding response regulator
523	 48.95	0	471368..471604	+	78	15601293	-	VCA0533	-	tatA protein
524	 44.88	0	472658..473038	-	126	15601294	-	VCA0535	-	hypothetical protein
525	 46.71	0	473172..474038	-	288	15601295	-	VCA0536	-	hypothetical protein
526	 46.23	0	474496..474999	-	167	15601296	-	VCA0537	-	hypothetical protein
527	 45.97	0	475386..475931	+	181	15601297	-	VCA0538	-	cytochrome b561, putative
528	 45.61	0	475928..476497	+	189	15601298	-	VCA0539	-	hypothetical protein
529	 48.21	0	476605..478056	-	483	15601299	-	VCA0540	-	formate transporter 1, putative
530	 33.33	-2	478160..478255	+	31	15601300	-	VCA0541	-	hypothetical protein
531	 46.91	0	478273..479178	+	301	15601301	-	VCA0542	-	LysR family transcriptional regulator
532	 47.37	0	479340..479852	+	170	15601302	-	VCA0543	-	hypothetical protein
533	 49.07	0	480084..481748	-	554	15601303	-	VCA0544	-	hypothetical protein
534	 48.54	0	481978..483720	+	580	15601304	-	VCA0545	-	5`-nucleotidase, putative
535	 47.34	0	484280..485236	+	318	15601305	-	VCA0546	-	hypothetical protein
536	 40.74	-1	485540..485728	+	62	15601306	-	VCA0547	-	hypothetical protein
537	 36.00	-2	485757..485906	+	49	15601307	-	VCA0548	-	hypothetical protein
538	 47.57	0	485878..486453	-	191	15601308	-	VCA0549	-	phnA protein
539	 46.72	0	486637..487719	+	360	15601309	-	VCA0550	-	hypothetical protein
540	 48.92	0	487773..488003	-	76	15601310	-	VCA0551	-	hypothetical protein
541	 47.59	0	488171..490471	-	766	15601311	-	VCA0552	-	fatty acid cis/trans isomerase
542	 47.13	0	490560..490733	-	57	15601312	-	VCA0553	-	hypothetical protein
543	 49.64	0	490884..492116	-	410	15601313	-	VCA0554	-	oxalate/formate antiporter, putative
544	 33.33	-2	492174..492293	-	39	15601314	-	VCA0555	-	hypothetical protein
545	 43.96	0	492527..493081	+	184	15601315	-	VCA0556	-	hypothetical protein
546	 43.69	0	493351..494760	+	469	15601316	-	VCA0557	-	GGDEF family protein
547	 48.76	0	495055..496623	+	522	15601317	-	VCA0558	-	gamma-glutamyltranspeptidase, putative
548	 44.21	0	496698..497681	+	327	15601318	-	VCA0559	-	hypothetical protein
549	 44.79	0	497678..498916	-	412	15601319	-	VCA0560	-	GGDEF family protein
550	 44.27	0	499272..499646	+	124	15601320	-	VCA0561	-	hypothetical protein
551	 42.65	0	499656..499934	+	92	15601321	-	VCA0562	-	hypothetical protein
552	 48.28	0	500227..501765	+	512	15601322	pntA	VCA0563	-	NAD(P) transhydrogenase subunit alpha
553	 47.13	0	501777..503153	+	458	15601323	pntB	VCA0564	-	pyridine nucleotide transhydrogenase
554	 44.73	0	503254..504753	+	499	15601324	-	VCA0565	-	sensor histidine kinase
555	 45.12	0	504647..505384	+	245	15601325	-	VCA0566	-	transcriptional regulator
556	 41.64	0	505381..506271	+	296	15601326	-	VCA0567	-	hypothetical protein
557	 43.53	0	506332..507498	+	388	15601327	-	VCA0568	-	hypothetical protein
558	 44.44	0	507539..507700	+	53	15601328	-	VCA0569	-	hypothetical protein
559	 41.99	0	508285..508596	-	103	15601329	-	VCA0570	-	translation initiation factor Sui1
560	 41.67	0	508604..508987	-	127	15601330	-	VCA0571	-	hypothetical protein
561	 42.49	0	509159..510163	-	334	15601331	ddl	VCA0572	-	D-alanyl-alanine synthetase A
562	 45.75	0	510314..510901	-	195	15601332	-	VCA0573	-	DamX-related protein
563	 46.20	0	511108..513789	+	893	15601333	-	VCA0574	-	hypothetical protein
564	 48.09	0	513839..514726	-	295	15601334	-	VCA0575	-	LysR family transcriptional regulator
565	 37.77	-1	514944..517040	+	698	15601335	-	VCA0576	-	heme transport protein HutA
566	 38.89	-1	517156..517263	+	35	15601336	-	VCA0577	-	hypothetical protein
45.97	MEAN

4.79	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.