IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.97   STD DEV: 4.79
Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, complete sequence - 1..1072315
1093 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
445	 35.70	-2	404320..404784	-	154	15601215	-	VCA0453	-	hypothetical protein
446	 41.54	0	406385..406981	+	198	15601216	-	VCA0455	-	hypothetical protein
447	 43.70	0	407272..407406	-	44	15601217	-	VCA0456	-	hypothetical protein
448	 34.15	-2	407778..408392	+	204	15601218	-	VCA0457	-	hypothetical protein
449	 37.06	-1	408539..409396	+	285	15601219	-	VCA0458	-	hypothetical protein
450	 41.89	0	409543..410103	+	186	15601220	-	VCA0459	-	hypothetical protein
451	 36.78	-1	410246..410593	+	115	15601221	-	VCA0460	-	hypothetical protein
452	 38.10	-1	410724..410849	+	41	15601222	-	VCA0461	-	hypothetical protein
453	 44.76	0	410985..411089	-	34	15601223	-	VCA0462	-	hypothetical protein
454	 41.35	0	412362..412760	+	132	15601224	-	VCA0463	-	biphenyl-2,3-diol 1,2-dioxygenase III-related protein
455	 41.27	0	412827..413204	+	125	15601225	-	VCA0464	-	hypothetical protein
456	 39.75	-1	413348..413752	+	134	15601226	-	VCA0465	-	hypothetical protein
457	 40.88	-1	414129..414287	-	52	15601227	-	VCA0466	-	hypothetical protein
458	 42.77	0	414638..414796	-	52	15601228	-	VCA0467	-	hypothetical protein
459	 40.84	-1	414949..415281	+	110	15601229	-	VCA0468	-	hypothetical protein
460	 45.08	0	415268..415582	+	104	15601230	-	VCA0469	-	hypothetical protein
461	 42.07	0	415719..416153	+	144	15601231	-	VCA0470	-	acetyltransferase, putative
462	 35.26	-2	416321..416476	+	51	15601232	-	VCA0471	-	hypothetical protein
463	 51.89	+1	416601..417581	-	326	15601233	-	VCA0472	-	IS5 transposase
464	 40.57	-1	417604..417921	+	105	15601234	-	VCA0473	-	acetyltransferase, putative
465	 40.12	-1	418092..418784	+	230	15601235	-	VCA0474	-	acetyltransferase, putative
466	 41.04	-1	418784..419185	+	133	15601236	-	VCA0475	-	doc protein
467	 40.82	-1	419373..419786	+	137	15601237	-	VCA0476	-	hypothetical protein
468	 41.03	-1	419979..420251	+	90	15601238	-	VCA0477	-	hypothetical protein
469	 42.96	0	420238..420528	+	96	15601239	-	VCA0478	-	hypothetical protein
470	 39.25	-1	420656..421111	+	151	15601240	-	VCA0479	-	acetyltransferase, putative
471	 43.14	0	421433..421585	+	50	15601241	-	VCA0480	-	hypothetical protein
472	 43.37	0	421787..422284	-	165	15601242	-	VCA0481	-	hypothetical protein
473	 42.49	0	422281..422553	-	90	15601243	-	VCA0482	-	hypothetical protein
474	 38.12	-1	422784..423452	+	222	15601244	-	VCA0483	-	hypothetical protein
475	 34.38	-2	423604..423891	+	95	15601245	-	VCA0484	-	hypothetical protein
476	 39.25	-1	424032..424403	+	123	15601246	-	VCA0485	-	mazG-related protein
477	 42.72	0	424470..424895	+	141	15601247	-	VCA0486	-	hypothetical protein
478	 42.13	0	424892..425425	+	177	15601248	-	VCA0487	-	hypothetical protein
479	 42.64	0	425627..425884	+	85	15601249	-	VCA0488	-	hypothetical protein
480	 43.89	0	425872..426174	+	100	15601250	-	VCA0489	-	hypothetical protein
481	 40.53	-1	426312..427325	+	337	15601251	-	VCA0490	-	GDXG family lipase
482	 38.19	-1	427398..427871	+	157	15601252	-	VCA0491	-	hypothetical protein
483	 39.04	-1	428335..428772	+	145	15601253	-	VCA0493	-	IS1004 transposase
484	 38.98	-1	428878..429054	+	58	15601254	-	VCA0494	-	hypothetical protein
485	 40.78	-1	429229..430101	+	290	15601255	-	VCA0495	-	hypothetical protein
486	 40.53	-1	430170..430850	+	226	15601256	-	VCA0496	-	glutathione S-transferase, putative
487	 38.04	-1	431036..431311	+	91	15601257	-	VCA0497	-	hypothetical protein
488	 44.44	0	431305..431826	+	173	15601258	-	VCA0498	-	hypothetical protein
489	 37.58	-1	431958..432122	-	54	15601259	-	VCA0499	-	hypothetical protein
490	 49.02	0	432119..432220	-	33	15601260	-	VCA0500	-	hypothetical protein
491	 38.64	-1	432501..432896	+	131	15601261	-	VCA0501	-	hypothetical protein
492	 42.03	0	432953..433090	+	45	15601262	-	VCA0502	-	hypothetical protein
493	 38.71	-1	433035..433313	-	92	15601263	-	VCA0503	-	hypothetical protein
494	 44.72	0	433310..433678	-	122	15601264	-	VCA0504	-	relB protein
495	 40.07	-1	433710..434303	+	197	15601265	-	VCA0505	-	acetyltransferase, putative
496	 41.55	0	434487..434900	+	137	15601266	-	VCA0506	-	hypothetical protein
497	 43.19	0	435419..435763	+	114	15601267	-	VCA0507	-	transposase OrfAB, subunit A
498	 44.44	0	435760..436632	+	290	15601268	-	VCA0508	-	transposase OrfAB, subunit B
499	 41.67	0	436670..436789	-	39	15601269	-	VCA0509	-	hypothetical protein
500	 44.86	0	436922..439828	+	968	15601270	-	VCA0510	-	hypothetical protein
501	 46.39	0	440291..442411	+	706	15601271	-	VCA0511	-	anaerobic ribonucleoside triphosphate reductase
502	 48.08	0	442416..442883	+	155	15601272	nrdG	VCA0512	-	anaerobic ribonucleotide reductase-activating protein
503	 48.31	0	443005..444186	+	393	161582043	-	VCA0513	-	aromatic amino acid aminotransferase
504	 48.25	0	444244..444927	+	227	15601274	-	VCA0514	-	hypothetical protein
505	 37.61	-1	445007..445123	-	38	15601275	-	VCA0515	-	hypothetical protein
506	 51.29	+1	445161..446903	-	580	15601276	-	VCA0516	-	PTS system, fructose-specific IIBC component
507	 50.42	0	446916..447869	-	317	15601277	-	VCA0517	-	1-phosphofructokinase
508	 50.37	0	447880..449082	-	400	15601278	-	VCA0518	-	bifunctional fructose-specific PTS IIA/HPr protein
509	 49.44	0	449421..450401	+	326	15601279	-	VCA0519	-	DNA-binding transcriptional regulator FruR
510	 50.09	0	450455..451594	+	379	15601280	-	VCA0520	-	exonuclease SbcD, putative
511	 49.38	0	451596..454637	+	1013	15601281	-	VCA0521	-	exonuclease SbcC, putative
512	 43.72	0	454734..456794	+	686	15601282	-	VCA0522	-	sensor histidine kinase/response regulator LuxN
513	 40.60	-1	457023..458192	-	389	15601283	-	VCA0523	-	hypothetical protein
514	 47.35	0	458389..459351	-	320	15601284	-	VCA0524	-	hypothetical protein
515	 37.14	-1	459328..459432	+	34	15601285	-	VCA0525	-	hypothetical protein
516	 48.26	0	459498..460904	-	468	15601286	-	VCA0526	-	chloride channel protein
517	 47.58	0	461371..462360	+	329	15601287	-	VCA0527	-	hypothetical protein
518	 48.78	0	462424..463368	-	314	15601288	rbgA	VCA0528	-	ribosomal biogenesis GTPase
519	 48.95	0	463691..465553	+	620	15601289	-	VCA0529	-	potassium uptake protein, Kup system
520	 51.67	+1	465651..468890	-	1079	15601290	-	VCA0530	-	pyruvate-flavoredoxin oxidoreductase
521	 49.06	0	468993..470486	+	497	15601291	-	VCA0531	-	sensor histidine kinase
522	 47.19	0	470476..471168	+	230	15601292	-	VCA0532	-	DNA-binding response regulator
523	 48.95	0	471368..471604	+	78	15601293	-	VCA0533	-	tatA protein
524	 44.88	0	472658..473038	-	126	15601294	-	VCA0535	-	hypothetical protein
525	 46.71	0	473172..474038	-	288	15601295	-	VCA0536	-	hypothetical protein
526	 46.23	0	474496..474999	-	167	15601296	-	VCA0537	-	hypothetical protein
527	 45.97	0	475386..475931	+	181	15601297	-	VCA0538	-	cytochrome b561, putative
528	 45.61	0	475928..476497	+	189	15601298	-	VCA0539	-	hypothetical protein
529	 48.21	0	476605..478056	-	483	15601299	-	VCA0540	-	formate transporter 1, putative
530	 33.33	-2	478160..478255	+	31	15601300	-	VCA0541	-	hypothetical protein
531	 46.91	0	478273..479178	+	301	15601301	-	VCA0542	-	LysR family transcriptional regulator
532	 47.37	0	479340..479852	+	170	15601302	-	VCA0543	-	hypothetical protein
533	 49.07	0	480084..481748	-	554	15601303	-	VCA0544	-	hypothetical protein
534	 48.54	0	481978..483720	+	580	15601304	-	VCA0545	-	5`-nucleotidase, putative
535	 47.34	0	484280..485236	+	318	15601305	-	VCA0546	-	hypothetical protein
536	 40.74	-1	485540..485728	+	62	15601306	-	VCA0547	-	hypothetical protein
537	 36.00	-2	485757..485906	+	49	15601307	-	VCA0548	-	hypothetical protein
538	 47.57	0	485878..486453	-	191	15601308	-	VCA0549	-	phnA protein
539	 46.72	0	486637..487719	+	360	15601309	-	VCA0550	-	hypothetical protein
540	 48.92	0	487773..488003	-	76	15601310	-	VCA0551	-	hypothetical protein
541	 47.59	0	488171..490471	-	766	15601311	-	VCA0552	-	fatty acid cis/trans isomerase
542	 47.13	0	490560..490733	-	57	15601312	-	VCA0553	-	hypothetical protein
543	 49.64	0	490884..492116	-	410	15601313	-	VCA0554	-	oxalate/formate antiporter, putative
544	 33.33	-2	492174..492293	-	39	15601314	-	VCA0555	-	hypothetical protein
45.97	MEAN

4.79	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.