IslandPathversion 1.0

IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No rRNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.97 STD DEV: 4.79
Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, complete sequence - 1..1072315
1093 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
389	 42.12	0	371673..372503	+	276	15601159	-	VCA0396	-	hypothetical protein
390	 39.96	-1	372560..373042	+	160	15601160	-	VCA0397	-	hypothetical protein
391	 42.86	0	373206..373373	+	55	15601161	-	VCA0398	-	hypothetical protein
392	 35.96	-2	373489..374364	+	291	15601162	-	VCA0399	-	hypothetical protein
393	 39.25	-1	374494..374949	+	151	15601163	-	VCA0400	-	acetyltransferase, putative
394	 40.82	-1	375133..375546	+	137	15601164	-	VCA0401	-	hypothetical protein
395	 43.35	0	375613..376131	+	172	15601165	-	VCA0402	-	acetyltransferase, putative
396	 41.09	-1	376324..376581	+	85	15601166	-	VCA0403	-	hypothetical protein
397	 43.70	0	376904..377038	-	44	15601167	-	VCA0404	-	hypothetical protein
398	 35.10	-2	377315..377935	+	206	15601168	-	VCA0405	-	hypothetical protein
399	 42.64	0	378083..378598	+	171	15601169	-	VCA0406	-	lipoprotein Blc
400	 43.17	0	378901..379083	+	60	15601170	-	VCA0407	-	hypothetical protein
401	 37.36	-1	379262..379609	+	115	15601171	-	VCA0408	-	hypothetical protein
402	 37.25	-1	379771..380229	+	152	15601172	-	VCA0409	-	hypothetical protein
403	 41.32	0	380380..380742	+	120	15601173	-	VCA0410	-	hypothetical protein
404	 41.13	-1	380926..381066	-	46	15601174	-	VCA0411	-	hypothetical protein
405	 43.89	0	381045..381224	+	59	15601175	-	VCA0412	-	hypothetical protein
406	 34.40	-2	381420..382073	+	217	15601176	-	VCA0413	-	hypothetical protein
407	 42.02	0	382198..382623	+	141	15601177	-	VCA0414	-	hypothetical protein
408	 40.28	-1	382786..383145	+	119	15601178	-	VCA0415	-	hypothetical protein
409	 45.68	0	383328..383651	+	107	15601179	-	VCA0416	-	hypothetical protein
410	 43.02	0	383932..384468	+	178	15601180	-	VCA0417	-	acetyltransferase, putative
411	 45.36	0	385229..385411	+	60	15601181	-	VCA0418	-	hypothetical protein
412	 41.22	0	385530..386315	+	261	15601182	-	VCA0419	-	hypothetical protein
413	 41.67	0	386384..386779	+	131	15601183	-	VCA0420	-	hypothetical protein
414	 39.44	-1	387025..387450	+	141	15601184	-	VCA0421	-	hypothetical protein
415	 43.54	0	387652..387945	+	97	15601185	-	VCA0422	-	hypothetical protein
416	 46.39	0	387942..388301	+	119	15601186	-	VCA0423	-	hypothetical protein
417	 44.97	0	388283..388729	+	148	15601187	-	VCA0424	-	hypothetical protein
418	 41.08	-1	388985..389410	+	141	15601188	-	VCA0425	-	hypothetical protein
419	 38.46	-1	389588..389821	+	77	15601189	-	VCA0426	-	hypothetical protein
420	 41.51	0	389797..389955	-	52	15601190	-	VCA0427	-	hypothetical protein
421	 37.56	-1	390185..390610	+	141	15601191	-	VCA0428	-	hypothetical protein
422	 48.57	0	391044..391148	-	34	15601192	-	VCA0429	-	hypothetical protein
423	 38.38	-1	391166..391264	+	32	15601193	-	VCA0430	-	hypothetical protein
424	 41.16	-1	391358..391753	+	131	15601194	-	VCA0431	-	hypothetical protein
425	 42.99	0	391927..392361	+	144	15601195	-	VCA0432	-	hypothetical protein
426	 35.55	-2	392515..393372	+	285	15601196	-	VCA0433	-	hypothetical protein
427	 43.70	0	393549..393683	-	44	15601197	-	VCA0434	-	hypothetical protein
428	 46.11	0	393668..393847	+	59	15601198	-	VCA0435	-	hypothetical protein
429	 39.15	-1	394041..394556	+	171	15601199	-	VCA0436	-	acetyltransferase, putative
430	 42.86	0	394853..394978	+	41	15601200	-	VCA0437	-	hypothetical protein
431	 41.03	-1	394941..395057	+	38	15601201	-	VCA0438	-	hypothetical protein
432	 41.79	0	395245..396249	+	334	15601202	-	VCA0439	-	microcin immunity protein MccF
433	 33.56	-2	396402..396848	+	148	15601203	-	VCA0440	-	hypothetical protein
434	 36.13	-2	396968..397897	+	309	15601204	-	VCA0441	-	hypothetical protein
435	 39.62	-1	398032..398508	+	158	15601205	-	VCA0442	-	acetyltransferase, putative
436	 41.86	0	398645..399160	+	171	15601206	-	VCA0443	-	lipoprotein Blc
437	 41.24	0	399296..399586	-	96	15601207	-	VCA0444	-	relE protein
438	 44.98	0	399576..399824	-	82	15601208	-	VCA0445	-	hypothetical protein
439	 44.27	0	400089..400280	+	63	15601209	-	VCA0446	-	haemagglutinin
440	 34.34	-2	400356..401048	+	230	15601210	-	VCA0447	-	haemagglutinin associated protein
441	 37.79	-1	401320..401745	+	141	15601211	-	VCA0448	-	hypothetical protein
442	 36.72	-1	402499..403029	+	176	15601212	-	VCA0450	-	hypothetical protein
443	 33.13	-2	403167..403667	+	166	15601213	-	VCA0451	-	hypothetical protein
444	 36.04	-2	403793..403903	+	36	15601214	-	VCA0452	-	hypothetical protein
445	 35.70	-2	404320..404784	-	154	15601215	-	VCA0453	-	hypothetical protein
446	 41.54	0	406385..406981	+	198	15601216	-	VCA0455	-	hypothetical protein
447	 43.70	0	407272..407406	-	44	15601217	-	VCA0456	-	hypothetical protein
448	 34.15	-2	407778..408392	+	204	15601218	-	VCA0457	-	hypothetical protein
449	 37.06	-1	408539..409396	+	285	15601219	-	VCA0458	-	hypothetical protein
450	 41.89	0	409543..410103	+	186	15601220	-	VCA0459	-	hypothetical protein
451	 36.78	-1	410246..410593	+	115	15601221	-	VCA0460	-	hypothetical protein
452	 38.10	-1	410724..410849	+	41	15601222	-	VCA0461	-	hypothetical protein
453	 44.76	0	410985..411089	-	34	15601223	-	VCA0462	-	hypothetical protein
454	 41.35	0	412362..412760	+	132	15601224	-	VCA0463	-	biphenyl-2,3-diol 1,2-dioxygenase III-related protein
455	 41.27	0	412827..413204	+	125	15601225	-	VCA0464	-	hypothetical protein
456	 39.75	-1	413348..413752	+	134	15601226	-	VCA0465	-	hypothetical protein
457	 40.88	-1	414129..414287	-	52	15601227	-	VCA0466	-	hypothetical protein
458	 42.77	0	414638..414796	-	52	15601228	-	VCA0467	-	hypothetical protein
459	 40.84	-1	414949..415281	+	110	15601229	-	VCA0468	-	hypothetical protein
460	 45.08	0	415268..415582	+	104	15601230	-	VCA0469	-	hypothetical protein
461	 42.07	0	415719..416153	+	144	15601231	-	VCA0470	-	acetyltransferase, putative
462	 35.26	-2	416321..416476	+	51	15601232	-	VCA0471	-	hypothetical protein
463	 51.89	+1	416601..417581	-	326	15601233	-	VCA0472	-	IS5 transposase
464	 40.57	-1	417604..417921	+	105	15601234	-	VCA0473	-	acetyltransferase, putative
465	 40.12	-1	418092..418784	+	230	15601235	-	VCA0474	-	acetyltransferase, putative
466	 41.04	-1	418784..419185	+	133	15601236	-	VCA0475	-	doc protein
467	 40.82	-1	419373..419786	+	137	15601237	-	VCA0476	-	hypothetical protein
468	 41.03	-1	419979..420251	+	90	15601238	-	VCA0477	-	hypothetical protein
469	 42.96	0	420238..420528	+	96	15601239	-	VCA0478	-	hypothetical protein
470	 39.25	-1	420656..421111	+	151	15601240	-	VCA0479	-	acetyltransferase, putative
471	 43.14	0	421433..421585	+	50	15601241	-	VCA0480	-	hypothetical protein
472	 43.37	0	421787..422284	-	165	15601242	-	VCA0481	-	hypothetical protein
473	 42.49	0	422281..422553	-	90	15601243	-	VCA0482	-	hypothetical protein
474	 38.12	-1	422784..423452	+	222	15601244	-	VCA0483	-	hypothetical protein
475	 34.38	-2	423604..423891	+	95	15601245	-	VCA0484	-	hypothetical protein
476	 39.25	-1	424032..424403	+	123	15601246	-	VCA0485	-	mazG-related protein
477	 42.72	0	424470..424895	+	141	15601247	-	VCA0486	-	hypothetical protein
478	 42.13	0	424892..425425	+	177	15601248	-	VCA0487	-	hypothetical protein
479	 42.64	0	425627..425884	+	85	15601249	-	VCA0488	-	hypothetical protein
480	 43.89	0	425872..426174	+	100	15601250	-	VCA0489	-	hypothetical protein
481	 40.53	-1	426312..427325	+	337	15601251	-	VCA0490	-	GDXG family lipase
482	 38.19	-1	427398..427871	+	157	15601252	-	VCA0491	-	hypothetical protein
483	 39.04	-1	428335..428772	+	145	15601253	-	VCA0493	-	IS1004 transposase
484	 38.98	-1	428878..429054	+	58	15601254	-	VCA0494	-	hypothetical protein
485	 40.78	-1	429229..430101	+	290	15601255	-	VCA0495	-	hypothetical protein
486	 40.53	-1	430170..430850	+	226	15601256	-	VCA0496	-	glutathione S-transferase, putative
487	 38.04	-1	431036..431311	+	91	15601257	-	VCA0497	-	hypothetical protein
488	 44.44	0	431305..431826	+	173	15601258	-	VCA0498	-	hypothetical protein
45.97	MEAN

4.79	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.