IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.97   STD DEV: 4.79
Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, complete sequence - 1..1072315
1093 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
315	 37.58	-1	326882..327046	-	54	15601085	-	VCA0320	-	hypothetical protein
316	 36.94	-1	327161..327271	-	36	15601086	-	VCA0321	-	hypothetical protein
317	 34.66	-2	327418..327870	+	150	15601087	-	VCA0322	-	hypothetical protein
318	 38.72	-1	328018..328314	-	98	15601088	-	VCA0323	-	hypothetical protein
319	 43.01	0	328280..328558	-	92	15601089	-	VCA0324	-	DNA-damage-inducible protein J
320	 44.44	0	328799..329122	+	107	15601090	-	VCA0325	-	hypothetical protein
321	 31.37	-2	329165..329266	-	33	15601091	-	VCA0326	-	hypothetical protein
322	 45.83	0	329437..329580	+	47	15601092	-	VCA0327	-	hypothetical protein
323	 41.35	0	329859..330257	+	132	15601093	-	VCA0328	-	biphenyl-2,3-diol 1,2-dioxygenase III-related protein
324	 44.84	0	330452..330703	+	83	15601094	-	VCA0329	-	hypothetical protein
325	 41.31	0	332490..332978	+	162	15601095	-	VCA0330	-	hypothetical protein
326	 36.05	-2	333106..333768	+	220	15601096	-	VCA0331	-	hypothetical protein
327	 41.20	0	333953..334219	+	88	15601097	-	VCA0332	-	hypothetical protein
328	 41.46	0	334206..334451	+	81	15601098	-	VCA0333	-	hypothetical protein
329	 29.99	-2	334535..335341	+	268	15601099	-	VCA0334	-	hypothetical protein
330	 40.20	-1	335550..335651	-	33	15601100	-	VCA0335	-	hypothetical protein
331	 44.81	0	335633..335815	+	60	15601101	-	VCA0336	-	hypothetical protein
332	 41.89	0	336031..337035	+	334	15601102	-	VCA0337	-	microcin immunity protein MccF
333	 40.28	-1	337188..337547	+	119	15601103	-	VCA0338	-	hypothetical protein
334	 45.73	0	337820..338053	+	77	15601104	-	VCA0339	-	hypothetical protein
335	 38.86	-1	338321..338827	+	168	15601105	-	VCA0340	-	hypothetical protein
336	 41.35	0	338972..339370	+	132	15601106	-	VCA0341	-	biphenyl-2,3-diol 1,2-dioxygenase III-related protein
337	 40.26	-1	339528..339830	+	100	15601107	-	VCA0342	-	hypothetical protein
338	 44.84	0	340025..340276	+	83	15601108	-	VCA0343	-	hypothetical protein
339	 37.32	-1	340545..340970	+	141	15601109	-	VCA0344	-	hypothetical protein
340	 38.25	-1	341170..341799	+	209	15601110	-	VCA0345	-	hypothetical protein
341	 41.46	0	342012..342491	+	159	15601111	-	VCA0346	-	H-REV 107-related protein
342	 41.55	0	342679..343092	+	137	15601112	-	VCA0347	-	hypothetical protein
343	 38.71	-1	343243..343521	-	92	15601113	-	VCA0348	-	hypothetical protein
344	 44.72	0	343518..343886	-	122	15601114	-	VCA0349	-	relB protein
345	 41.67	0	343997..344512	+	171	15601115	-	VCA0350	-	lipoprotein Blc
346	 39.20	-1	344577..345173	+	198	15601116	-	VCA0351	-	hypothetical protein
347	 40.20	-1	345481..345582	-	33	15601117	-	VCA0352	-	hypothetical protein
348	 44.81	0	345564..345746	+	60	15601118	-	VCA0353	-	hypothetical protein
349	 41.80	0	345853..346419	+	188	15601119	-	VCA0354	-	hypothetical protein
350	 42.26	0	346568..347194	+	208	15601120	-	VCA0355	-	hypothetical protein
351	 37.01	-1	347308..348015	+	235	15601121	-	VCA0356	-	hypothetical protein
352	 45.00	0	348713..348892	+	59	15601122	-	VCA0357	-	hypothetical protein
353	 42.67	0	349629..349928	-	99	15601123	-	VCA0359	-	plasmid stabilization element ParE, putative
354	 44.59	0	349915..350376	-	153	15601124	-	VCA0360	-	hypothetical protein
355	 35.06	-2	350396..350974	+	192	15601125	-	VCA0361	-	hypothetical protein
356	 43.04	0	351085..351393	-	102	15601126	-	VCA0362	-	hypothetical protein
357	 30.12	-2	351512..352195	+	227	15601127	-	VCA0363	-	hypothetical protein
358	 38.20	-1	352409..352675	+	88	15601128	-	VCA0364	-	hypothetical protein
359	 39.71	-1	352830..353237	+	135	15601129	-	VCA0365	-	hypothetical protein
360	 37.50	-1	353709..354644	+	311	15601130	-	VCA0366	-	hypothetical protein
361	 37.83	-1	354862..355884	+	340	15601131	-	VCA0367	-	hypothetical protein
362	 36.91	-1	355817..356431	+	204	15601132	-	VCA0368	-	hypothetical protein
363	 43.10	0	356492..357187	-	231	15601133	-	VCA0370	-	hypothetical protein
364	 42.13	0	356492..356866	-	124	15601134	-	VCA0369	-	hypothetical protein
365	 44.44	0	357184..358056	-	290	15601135	-	VCA0371	-	transposase OrfAB, subunit B
366	 43.19	0	358053..358397	-	114	15601136	-	VCA0372	-	transposase OrfAB, subunit A
367	 35.14	-2	358508..358618	+	36	15601137	-	VCA0373	-	hypothetical protein
368	 34.87	-2	358749..359786	+	345	15601138	-	VCA0374	-	hypothetical protein
369	 43.21	0	359966..360289	+	107	15601139	-	VCA0375	-	hypothetical protein
370	 40.66	-1	360542..360937	+	131	15601140	-	VCA0376	-	hypothetical protein
371	 53.97	+1	360954..361079	-	41	15601141	-	VCA0377	-	hypothetical protein
372	 40.91	-1	361598..361993	+	131	15601142	-	VCA0379	-	hypothetical protein
373	 42.24	0	362068..362673	+	201	15601143	-	VCA0380	-	hypothetical protein
374	 46.67	0	362970..363149	+	59	15601144	-	VCA0381	-	hypothetical protein
375	 42.72	0	363345..363770	+	141	15601145	-	VCA0382	-	hypothetical protein
376	 41.44	0	364895..365005	-	36	15601146	-	VCA0383	-	hypothetical protein
377	 47.92	0	365062..365157	+	31	15601147	-	VCA0384	-	hypothetical protein
378	 39.58	-1	365351..365686	-	111	15601148	-	VCA0385	-	hypothetical protein
379	 39.92	-1	365687..365929	-	80	15601149	-	VCA0386	-	hypothetical protein
380	 40.98	-1	366171..366680	+	169	15601150	-	VCA0387	-	toxin resistance protein
381	 36.09	-2	366737..367390	+	217	15601151	-	VCA0388	-	hypothetical protein
382	 47.44	0	367685..367918	+	77	15601152	-	VCA0389	-	hypothetical protein
383	 44.44	0	368195..368293	+	32	15601153	-	VCA0390	-	hypothetical protein
384	 38.14	-1	369360..369713	+	117	15601154	-	VCA0391	-	killer protein, putative
385	 42.14	0	369724..370041	+	105	15601155	-	VCA0392	-	antidote protein, putative
386	 42.86	0	370325..370450	+	41	15601156	-	VCA0393	-	hypothetical protein
387	 41.03	-1	370413..370529	+	38	15601157	-	VCA0394	-	hypothetical protein
388	 42.38	0	370629..371468	+	279	15601158	-	VCA0395	-	hypothetical protein
389	 42.12	0	371673..372503	+	276	15601159	-	VCA0396	-	hypothetical protein
390	 39.96	-1	372560..373042	+	160	15601160	-	VCA0397	-	hypothetical protein
391	 42.86	0	373206..373373	+	55	15601161	-	VCA0398	-	hypothetical protein
392	 35.96	-2	373489..374364	+	291	15601162	-	VCA0399	-	hypothetical protein
393	 39.25	-1	374494..374949	+	151	15601163	-	VCA0400	-	acetyltransferase, putative
394	 40.82	-1	375133..375546	+	137	15601164	-	VCA0401	-	hypothetical protein
395	 43.35	0	375613..376131	+	172	15601165	-	VCA0402	-	acetyltransferase, putative
396	 41.09	-1	376324..376581	+	85	15601166	-	VCA0403	-	hypothetical protein
397	 43.70	0	376904..377038	-	44	15601167	-	VCA0404	-	hypothetical protein
398	 35.10	-2	377315..377935	+	206	15601168	-	VCA0405	-	hypothetical protein
399	 42.64	0	378083..378598	+	171	15601169	-	VCA0406	-	lipoprotein Blc
400	 43.17	0	378901..379083	+	60	15601170	-	VCA0407	-	hypothetical protein
401	 37.36	-1	379262..379609	+	115	15601171	-	VCA0408	-	hypothetical protein
402	 37.25	-1	379771..380229	+	152	15601172	-	VCA0409	-	hypothetical protein
403	 41.32	0	380380..380742	+	120	15601173	-	VCA0410	-	hypothetical protein
404	 41.13	-1	380926..381066	-	46	15601174	-	VCA0411	-	hypothetical protein
405	 43.89	0	381045..381224	+	59	15601175	-	VCA0412	-	hypothetical protein
406	 34.40	-2	381420..382073	+	217	15601176	-	VCA0413	-	hypothetical protein
407	 42.02	0	382198..382623	+	141	15601177	-	VCA0414	-	hypothetical protein
408	 40.28	-1	382786..383145	+	119	15601178	-	VCA0415	-	hypothetical protein
409	 45.68	0	383328..383651	+	107	15601179	-	VCA0416	-	hypothetical protein
410	 43.02	0	383932..384468	+	178	15601180	-	VCA0417	-	acetyltransferase, putative
411	 45.36	0	385229..385411	+	60	15601181	-	VCA0418	-	hypothetical protein
412	 41.22	0	385530..386315	+	261	15601182	-	VCA0419	-	hypothetical protein
413	 41.67	0	386384..386779	+	131	15601183	-	VCA0420	-	hypothetical protein
414	 39.44	-1	387025..387450	+	141	15601184	-	VCA0421	-	hypothetical protein
45.97	MEAN

4.79	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.