IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.97   STD DEV: 4.79
Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, complete sequence - 1..1072315
1093 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
263	 46.64	0	282737..283510	-	257	15601034	-	VCA0266	-	AraC/XylS family transcriptional regulator
264	 46.67	0	283612..284751	+	379	15601035	-	VCA0267	-	multidrug resistance protein D
265	 47.41	0	285034..286965	+	643	15601036	-	VCA0268	-	methyl-accepting chemotaxis protein
266	 49.04	0	286981..288654	+	557	15601037	-	VCA0269	-	decarboxylase, group II
267	 48.72	0	288819..289988	+	389	15601038	-	VCA0270	-	D-alanyl-D-alanine carboxypeptidase
268	 48.28	0	290166..290513	+	115	15601039	-	VCA0271	-	hypothetical protein
269	 45.31	0	290571..290954	+	127	15601040	-	VCA0272	-	hypothetical protein
270	 36.30	-2	291097..291231	+	44	15601041	-	VCA0273	-	hypothetical protein
271	 49.17	0	291259..291978	+	239	15601042	-	VCA0274	-	carbonic anhydrase
272	 38.81	-1	292265..292702	-	145	15601043	-	VCA0275	-	IS1004 transposase
273	 47.51	0	295889..296269	-	126	15601044	-	VCA0277	-	glycine cleavage system protein H
274	 51.22	+1	296306..297613	-	435	15601045	-	VCA0278	-	serine hydroxymethyltransferase
275	 49.36	0	298001..298624	+	207	15601046	-	VCA0279	-	transcriptional regulator
276	 45.85	0	300467..301624	+	385	15601047	-	VCA0281	-	integrase, putative
277	 51.89	+1	301670..302650	+	326	15601048	-	VCA0282	-	IS5 transposase
278	 37.75	-1	302926..304149	+	407	15601049	-	VCA0283	-	hypothetical protein
279	 41.05	-1	304670..305200	+	176	15601050	-	VCA0284	-	hypothetical protein
280	 39.43	-1	305200..305871	+	223	15601051	-	VCA0285	-	hypothetical protein
281	 37.61	-1	305873..306223	+	116	15601052	-	VCA0286	-	hypothetical protein
282	 45.67	0	306492..308420	+	642	15601053	-	VCA0287	-	threonyl-tRNA synthetase
283	 46.67	0	308586..308975	+	129	15601864	infC	VCA0288	-	initiation factor IF3
284	 45.13	0	309079..309273	+	64	15601054	rpmI	VCA0289	-	50S ribosomal protein L35
285	 46.05	0	309315..309668	+	117	15601055	rplT	VCA0290	-	50S ribosomal protein L20
286	 42.26	0	309750..310712	-	320	15601056	-	VCA0291	-	site-specific recombinase IntI4
287	 38.20	-1	311034..311300	+	88	15601057	-	VCA0292	-	hypothetical protein
288	 40.50	-1	311455..312054	+	199	15601058	-	VCA0293	-	hypothetical protein
289	 42.40	0	312716..313090	+	124	15601059	-	VCA0294	-	hypothetical protein
290	 44.97	0	313335..313523	+	62	15601060	-	VCA0295	-	hypothetical protein
291	 40.20	-1	313804..313905	-	33	15601061	-	VCA0296	-	hypothetical protein
292	 44.81	0	313887..314069	+	60	15601062	-	VCA0297	-	hypothetical protein
293	 44.84	0	314325..314576	+	83	15601063	-	VCA0298	-	hypothetical protein
294	 40.09	-1	314717..315160	+	147	15601064	-	VCA0299	-	hypothetical protein
295	 40.63	-1	315311..315940	+	209	15601065	-	VCA0300	-	chloramphenicol acetyltransferase
296	 42.63	0	316096..316848	+	250	15601066	-	VCA0301	-	short chain dehydrogenase/reductase family oxidoreductase
297	 43.72	0	317150..317332	+	60	15601067	-	VCA0302	-	hypothetical protein
298	 40.00	-1	317510..317914	+	134	15601068	-	VCA0303	-	hypothetical protein
299	 45.36	0	318210..318392	+	60	15601069	-	VCA0304	-	hypothetical protein
300	 39.32	-1	318630..318746	-	38	15601070	-	VCA0305	-	hypothetical protein
301	 44.26	0	318746..318928	+	60	15601071	-	VCA0306	-	hypothetical protein
302	 35.99	-2	319123..319800	+	225	15601072	-	VCA0307	-	hypothetical protein
303	 38.71	-1	319962..321170	+	402	15601073	-	VCA0308	-	deoxyguanosinetriphosphate triphosphohydrolase-related protein
304	 38.16	-1	321332..322036	+	234	15601074	-	VCA0309	-	hypothetical protein
305	 39.34	-1	322167..322532	+	121	15601075	-	VCA0310	-	hypothetical protein
306	 39.58	-1	322686..323021	-	111	15601076	-	VCA0311	-	hypothetical protein
307	 39.92	-1	323022..323264	-	80	15601077	-	VCA0312	-	hypothetical protein
308	 41.09	-1	323508..323894	+	128	15601078	-	VCA0313	-	MutT/nudix family protein
309	 35.46	-2	324013..324294	+	93	15601079	-	VCA0314	-	hypothetical protein
310	 41.51	0	324270..324428	-	52	15601080	-	VCA0315	-	hypothetical protein
311	 43.02	0	324552..325088	+	178	15601081	-	VCA0316	-	acetyltransferase, putative
312	 42.83	0	325225..325740	+	171	15601082	-	VCA0317	-	lipoprotein Blc
313	 43.37	0	325890..326387	-	165	15601083	-	VCA0318	-	hypothetical protein
314	 42.49	0	326384..326656	-	90	15601084	-	VCA0319	-	hypothetical protein
315	 37.58	-1	326882..327046	-	54	15601085	-	VCA0320	-	hypothetical protein
316	 36.94	-1	327161..327271	-	36	15601086	-	VCA0321	-	hypothetical protein
317	 34.66	-2	327418..327870	+	150	15601087	-	VCA0322	-	hypothetical protein
318	 38.72	-1	328018..328314	-	98	15601088	-	VCA0323	-	hypothetical protein
319	 43.01	0	328280..328558	-	92	15601089	-	VCA0324	-	DNA-damage-inducible protein J
320	 44.44	0	328799..329122	+	107	15601090	-	VCA0325	-	hypothetical protein
321	 31.37	-2	329165..329266	-	33	15601091	-	VCA0326	-	hypothetical protein
322	 45.83	0	329437..329580	+	47	15601092	-	VCA0327	-	hypothetical protein
323	 41.35	0	329859..330257	+	132	15601093	-	VCA0328	-	biphenyl-2,3-diol 1,2-dioxygenase III-related protein
324	 44.84	0	330452..330703	+	83	15601094	-	VCA0329	-	hypothetical protein
325	 41.31	0	332490..332978	+	162	15601095	-	VCA0330	-	hypothetical protein
326	 36.05	-2	333106..333768	+	220	15601096	-	VCA0331	-	hypothetical protein
327	 41.20	0	333953..334219	+	88	15601097	-	VCA0332	-	hypothetical protein
328	 41.46	0	334206..334451	+	81	15601098	-	VCA0333	-	hypothetical protein
329	 29.99	-2	334535..335341	+	268	15601099	-	VCA0334	-	hypothetical protein
330	 40.20	-1	335550..335651	-	33	15601100	-	VCA0335	-	hypothetical protein
331	 44.81	0	335633..335815	+	60	15601101	-	VCA0336	-	hypothetical protein
332	 41.89	0	336031..337035	+	334	15601102	-	VCA0337	-	microcin immunity protein MccF
333	 40.28	-1	337188..337547	+	119	15601103	-	VCA0338	-	hypothetical protein
334	 45.73	0	337820..338053	+	77	15601104	-	VCA0339	-	hypothetical protein
335	 38.86	-1	338321..338827	+	168	15601105	-	VCA0340	-	hypothetical protein
336	 41.35	0	338972..339370	+	132	15601106	-	VCA0341	-	biphenyl-2,3-diol 1,2-dioxygenase III-related protein
337	 40.26	-1	339528..339830	+	100	15601107	-	VCA0342	-	hypothetical protein
338	 44.84	0	340025..340276	+	83	15601108	-	VCA0343	-	hypothetical protein
339	 37.32	-1	340545..340970	+	141	15601109	-	VCA0344	-	hypothetical protein
340	 38.25	-1	341170..341799	+	209	15601110	-	VCA0345	-	hypothetical protein
341	 41.46	0	342012..342491	+	159	15601111	-	VCA0346	-	H-REV 107-related protein
342	 41.55	0	342679..343092	+	137	15601112	-	VCA0347	-	hypothetical protein
343	 38.71	-1	343243..343521	-	92	15601113	-	VCA0348	-	hypothetical protein
344	 44.72	0	343518..343886	-	122	15601114	-	VCA0349	-	relB protein
345	 41.67	0	343997..344512	+	171	15601115	-	VCA0350	-	lipoprotein Blc
346	 39.20	-1	344577..345173	+	198	15601116	-	VCA0351	-	hypothetical protein
347	 40.20	-1	345481..345582	-	33	15601117	-	VCA0352	-	hypothetical protein
348	 44.81	0	345564..345746	+	60	15601118	-	VCA0353	-	hypothetical protein
349	 41.80	0	345853..346419	+	188	15601119	-	VCA0354	-	hypothetical protein
350	 42.26	0	346568..347194	+	208	15601120	-	VCA0355	-	hypothetical protein
351	 37.01	-1	347308..348015	+	235	15601121	-	VCA0356	-	hypothetical protein
352	 45.00	0	348713..348892	+	59	15601122	-	VCA0357	-	hypothetical protein
353	 42.67	0	349629..349928	-	99	15601123	-	VCA0359	-	plasmid stabilization element ParE, putative
354	 44.59	0	349915..350376	-	153	15601124	-	VCA0360	-	hypothetical protein
355	 35.06	-2	350396..350974	+	192	15601125	-	VCA0361	-	hypothetical protein
356	 43.04	0	351085..351393	-	102	15601126	-	VCA0362	-	hypothetical protein
357	 30.12	-2	351512..352195	+	227	15601127	-	VCA0363	-	hypothetical protein
358	 38.20	-1	352409..352675	+	88	15601128	-	VCA0364	-	hypothetical protein
359	 39.71	-1	352830..353237	+	135	15601129	-	VCA0365	-	hypothetical protein
360	 37.50	-1	353709..354644	+	311	15601130	-	VCA0366	-	hypothetical protein
361	 37.83	-1	354862..355884	+	340	15601131	-	VCA0367	-	hypothetical protein
362	 36.91	-1	355817..356431	+	204	15601132	-	VCA0368	-	hypothetical protein
45.97	MEAN

4.79	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.