IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.97   STD DEV: 4.79
Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, complete sequence - 1..1072315
1093 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
214	 44.19	0	233907..234173	+	88	15600985	-	VCA0216	-	hypothetical protein
215	 45.28	0	234164..235243	-	359	15600986	-	VCA0217	-	GGDEF family protein
216	 47.97	0	235364..236620	-	418	15600987	-	VCA0218	-	thermolabile hemolysin
217	 47.75	0	237590..239815	+	741	15600988	-	VCA0219	-	haemolysin
218	 48.57	0	240114..241760	+	548	15600989	-	VCA0220	-	hemolysin secretion protein HylB
219	 51.08	+1	242027..243046	+	339	15600990	-	VCA0221	-	lactonizing lipase
220	 52.98	+1	243056..243910	+	284	15600991	-	VCA0222	-	lipase chaperone
221	 49.37	0	243986..246742	-	918	15600992	-	VCA0223	-	protease
222	 38.24	-1	246827..247132	-	101	15600993	-	VCA0224	-	hypothetical protein
223	 49.02	0	247686..248450	+	254	15600994	-	VCA0225	-	hypothetical protein
224	 39.02	-1	248610..248732	-	40	15600995	-	VCA0226	-	hypothetical protein
225	 44.71	0	248766..249767	+	333	15600996	-	VCA0227	-	iron(III) ABC transporter, periplasmic iron-compound-binding protein
226	 46.33	0	249820..250758	+	312	15600997	-	VCA0228	-	iron(III) ABC transporter, permease protein
227	 49.11	0	250748..251698	+	316	15600998	-	VCA0229	-	iron(III) ABC transporter, permease protein
228	 49.93	0	251701..252465	+	254	15600999	-	VCA0230	-	iron(III) ABC transporter, ATP-binding protein
229	 47.45	0	252511..253587	-	358	15601000	-	VCA0231	-	AraC/XylS family transcriptional regulator
230	 49.84	0	255650..255970	+	106	15601001	-	VCA0233	-	hypothetical protein
231	 41.03	-1	255986..256102	+	38	15601002	-	VCA0234	-	hypothetical protein
232	 50.34	0	256240..257433	+	397	15601003	-	VCA0235	-	acetate kinase
233	 45.12	0	257514..257810	+	98	15601004	-	VCA0236	-	hypothetical protein
234	 47.54	0	257928..258497	-	189	15601005	-	VCA0237	-	hypothetical protein
235	 48.24	0	258742..260391	+	549	15601006	-	VCA0238	-	sensor histidine kinase
236	 48.44	0	260372..261046	+	224	15601007	-	VCA0239	-	transcriptional regulator
237	 50.00	0	261049..261678	-	209	15601008	-	VCA0240	-	hypothetical protein
238	 52.09	+1	261638..262522	-	294	15601009	-	VCA0241	-	putative L-xylulose 5-phosphate 3-epimerase
239	 51.85	+1	262534..263181	-	215	15601010	ulaD	VCA0242	-	3-keto-L-gulonate-6-phosphate decarboxylase
240	 52.80	+1	263187..264008	-	273	15601011	-	VCA0243	-	hypothetical protein
241	 53.82	+1	264014..264706	-	230	15601012	araD	VCA0244	-	L-ribulose-5-phosphate 4-epimerase
242	 52.86	+1	264715..265221	-	168	15601013	-	VCA0245	-	PTS system, IIA component
243	 51.05	+1	265319..267079	-	586	15601014	ulaA	VCA0246	-	ascorbate-specific PTS system enzyme IIC/IIB
244	 47.62	0	267445..268200	+	251	15601015	-	VCA0247	-	transcriptional repressor UlaR
245	 48.41	0	268327..269394	+	355	15601016	-	VCA0248	-	putative L-ascorbate 6-phosphate lactonase
246	 50.75	0	269494..270027	-	177	15601017	-	VCA0249	-	cytochrome b561, putative
247	 45.04	0	270200..271600	-	466	15601018	-	VCA0250	-	alpha-amylase
248	 41.88	0	271740..271856	+	38	15601019	-	VCA0251	-	hypothetical protein
249	 37.84	-1	271816..271926	+	36	15601020	-	VCA0252	-	hypothetical protein
250	 48.93	0	271933..272631	+	232	15601021	-	VCA0253	-	antibiotic acetyltransferase
251	 51.73	+1	273253..275421	-	722	15601022	-	VCA0254	-	hypothetical protein
252	 56.20	+2	275510..276340	-	276	15601023	-	VCA0255	-	hypothetical protein
253	 51.34	+1	276337..277008	-	223	15601024	-	VCA0256	-	transcriptional regulator
254	 53.54	+1	276984..278438	-	484	15601025	-	VCA0257	-	sensor histidine kinase
255	 53.61	+1	278541..279053	-	170	15601026	-	VCA0258	-	hypothetical protein
256	 39.53	-1	279096..279224	-	42	15601027	-	VCA0259	-	hypothetical protein
257	 49.23	0	279248..279442	-	64	15601028	-	VCA0260	-	hypothetical protein
258	 46.18	0	279430..279756	-	108	15601029	-	VCA0261	-	hypothetical protein
259	 46.96	0	279866..280276	-	136	15601030	-	VCA0262	-	hypothetical protein
260	 44.75	0	280382..280924	-	180	15601031	-	VCA0263	-	acetyltransferase, putative
261	 45.38	0	280935..282113	-	392	15601032	-	VCA0264	-	transcriptional regulator, putative
262	 43.31	0	282297..282677	+	126	15601033	-	VCA0265	-	hypothetical protein
263	 46.64	0	282737..283510	-	257	15601034	-	VCA0266	-	AraC/XylS family transcriptional regulator
264	 46.67	0	283612..284751	+	379	15601035	-	VCA0267	-	multidrug resistance protein D
265	 47.41	0	285034..286965	+	643	15601036	-	VCA0268	-	methyl-accepting chemotaxis protein
266	 49.04	0	286981..288654	+	557	15601037	-	VCA0269	-	decarboxylase, group II
267	 48.72	0	288819..289988	+	389	15601038	-	VCA0270	-	D-alanyl-D-alanine carboxypeptidase
268	 48.28	0	290166..290513	+	115	15601039	-	VCA0271	-	hypothetical protein
269	 45.31	0	290571..290954	+	127	15601040	-	VCA0272	-	hypothetical protein
270	 36.30	-2	291097..291231	+	44	15601041	-	VCA0273	-	hypothetical protein
271	 49.17	0	291259..291978	+	239	15601042	-	VCA0274	-	carbonic anhydrase
272	 38.81	-1	292265..292702	-	145	15601043	-	VCA0275	-	IS1004 transposase
273	 47.51	0	295889..296269	-	126	15601044	-	VCA0277	-	glycine cleavage system protein H
274	 51.22	+1	296306..297613	-	435	15601045	-	VCA0278	-	serine hydroxymethyltransferase
275	 49.36	0	298001..298624	+	207	15601046	-	VCA0279	-	transcriptional regulator
276	 45.85	0	300467..301624	+	385	15601047	-	VCA0281	-	integrase, putative
277	 51.89	+1	301670..302650	+	326	15601048	-	VCA0282	-	IS5 transposase
278	 37.75	-1	302926..304149	+	407	15601049	-	VCA0283	-	hypothetical protein
279	 41.05	-1	304670..305200	+	176	15601050	-	VCA0284	-	hypothetical protein
280	 39.43	-1	305200..305871	+	223	15601051	-	VCA0285	-	hypothetical protein
281	 37.61	-1	305873..306223	+	116	15601052	-	VCA0286	-	hypothetical protein
282	 45.67	0	306492..308420	+	642	15601053	-	VCA0287	-	threonyl-tRNA synthetase
283	 46.67	0	308586..308975	+	129	15601864	infC	VCA0288	-	initiation factor IF3
284	 45.13	0	309079..309273	+	64	15601054	rpmI	VCA0289	-	50S ribosomal protein L35
285	 46.05	0	309315..309668	+	117	15601055	rplT	VCA0290	-	50S ribosomal protein L20
286	 42.26	0	309750..310712	-	320	15601056	-	VCA0291	-	site-specific recombinase IntI4
287	 38.20	-1	311034..311300	+	88	15601057	-	VCA0292	-	hypothetical protein
288	 40.50	-1	311455..312054	+	199	15601058	-	VCA0293	-	hypothetical protein
289	 42.40	0	312716..313090	+	124	15601059	-	VCA0294	-	hypothetical protein
290	 44.97	0	313335..313523	+	62	15601060	-	VCA0295	-	hypothetical protein
291	 40.20	-1	313804..313905	-	33	15601061	-	VCA0296	-	hypothetical protein
292	 44.81	0	313887..314069	+	60	15601062	-	VCA0297	-	hypothetical protein
293	 44.84	0	314325..314576	+	83	15601063	-	VCA0298	-	hypothetical protein
294	 40.09	-1	314717..315160	+	147	15601064	-	VCA0299	-	hypothetical protein
295	 40.63	-1	315311..315940	+	209	15601065	-	VCA0300	-	chloramphenicol acetyltransferase
296	 42.63	0	316096..316848	+	250	15601066	-	VCA0301	-	short chain dehydrogenase/reductase family oxidoreductase
297	 43.72	0	317150..317332	+	60	15601067	-	VCA0302	-	hypothetical protein
298	 40.00	-1	317510..317914	+	134	15601068	-	VCA0303	-	hypothetical protein
299	 45.36	0	318210..318392	+	60	15601069	-	VCA0304	-	hypothetical protein
300	 39.32	-1	318630..318746	-	38	15601070	-	VCA0305	-	hypothetical protein
301	 44.26	0	318746..318928	+	60	15601071	-	VCA0306	-	hypothetical protein
302	 35.99	-2	319123..319800	+	225	15601072	-	VCA0307	-	hypothetical protein
303	 38.71	-1	319962..321170	+	402	15601073	-	VCA0308	-	deoxyguanosinetriphosphate triphosphohydrolase-related protein
304	 38.16	-1	321332..322036	+	234	15601074	-	VCA0309	-	hypothetical protein
305	 39.34	-1	322167..322532	+	121	15601075	-	VCA0310	-	hypothetical protein
306	 39.58	-1	322686..323021	-	111	15601076	-	VCA0311	-	hypothetical protein
307	 39.92	-1	323022..323264	-	80	15601077	-	VCA0312	-	hypothetical protein
308	 41.09	-1	323508..323894	+	128	15601078	-	VCA0313	-	MutT/nudix family protein
309	 35.46	-2	324013..324294	+	93	15601079	-	VCA0314	-	hypothetical protein
310	 41.51	0	324270..324428	-	52	15601080	-	VCA0315	-	hypothetical protein
311	 43.02	0	324552..325088	+	178	15601081	-	VCA0316	-	acetyltransferase, putative
312	 42.83	0	325225..325740	+	171	15601082	-	VCA0317	-	lipoprotein Blc
313	 43.37	0	325890..326387	-	165	15601083	-	VCA0318	-	hypothetical protein
45.97	MEAN

4.79	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.