IslandPathversion 1.0

IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No rRNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.97 STD DEV: 4.79
Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, complete sequence - 1..1072315
1093 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
169	 49.69	0	186643..187290	-	215	15600940	-	VCA0170	-	hypothetical protein
170	 52.70	+1	187284..189224	-	646	15600941	-	VCA0171	-	hypothetical protein
171	 50.05	0	189226..190182	-	318	15600942	-	VCA0172	-	hypothetical protein
172	 50.10	0	190169..190657	-	162	15600943	-	VCA0173	-	hypothetical protein
173	 50.11	0	190654..191589	-	311	15600944	-	VCA0174	-	hypothetical protein
174	 50.78	+1	191593..192549	-	318	15600945	-	VCA0175	-	MoxR-related protein
175	 48.63	0	192834..194768	+	644	15600946	-	VCA0176	-	methyl-accepting chemotaxis protein
176	 45.10	0	194825..195028	+	67	15600947	-	VCA0177	-	hypothetical protein
177	 51.53	+1	195304..195957	-	217	15600948	-	VCA0178	-	frnE protein
178	 49.71	0	196603..197811	+	402	15600949	-	VCA0179	-	NupC family protein
179	 48.01	0	198062..199294	+	410	15600950	-	VCA0180	-	peptidase T
180	 48.63	0	199466..200341	+	291	15600951	-	VCA0181	-	hypothetical protein
181	 52.10	+1	200338..201930	-	530	15600952	-	VCA0182	-	anaerobic nitric oxide reductase transcription regulator
182	 48.10	0	202121..203305	+	394	15600953	-	VCA0183	-	nitric oxide dioxygenase
183	 45.24	0	203449..203658	-	69	15600954	-	VCA0184	-	cold shock DNA-binding domain-containing protein
184	 43.86	0	204017..204244	+	75	15600955	-	VCA0185	-	hypothetical protein
185	 46.03	0	204632..205009	+	125	15600956	-	VCA0186	-	hypothetical protein
186	 44.70	0	205035..205166	-	43	15600957	-	VCA0187	-	hypothetical protein
187	 43.01	0	205244..205522	+	92	15600958	-	VCA0188	-	hypothetical protein
188	 46.87	0	205609..206613	+	334	15600959	-	VCA0189	-	response regulator
189	 43.62	0	206613..207059	+	148	15600960	-	VCA0190	-	hypothetical protein
190	 51.52	+1	207097..208581	+	494	15600961	-	VCA0191	-	hypothetical protein
191	 48.59	0	208570..209565	-	331	15600962	-	VCA0192	-	D-lactate dehydrogenase
192	 50.97	+1	209748..211091	+	447	15600963	-	VCA0193	-	Na+/H+ antiporter, putative
193	 47.45	0	211093..211935	-	280	15600964	-	VCA0194	-	potassium channel protein, putative
194	 44.44	0	212001..212549	-	182	15600965	-	VCA0195	-	hypothetical protein
195	 37.83	-1	212665..213042	-	125	15600966	-	VCA0196	-	hypothetical protein
196	 51.05	+1	213207..214250	+	347	15600967	-	VCA0197	-	guanosine 5'-monophosphate oxidoreductase
197	 39.06	-1	214574..215725	+	383	15600968	-	VCA0198	-	site-specific DNA-methyltransferase, putative
198	 34.74	-2	215849..217765	+	638	15600969	-	VCA0199	-	hypothetical protein
199	 38.13	-1	217758..218882	+	374	15600970	-	VCA0200	-	hypothetical protein
200	 31.74	-2	218879..219757	+	292	15600971	-	VCA0201	-	hypothetical protein
201	 38.81	-1	219825..220262	-	145	15600972	-	VCA0202	-	IS1004 transposase
202	 48.89	0	220767..222122	-	451	15600973	-	VCA0204	-	ATP-dependent RNA helicase RhlE
203	 50.94	+1	222312..223640	-	442	15600974	-	VCA0205	-	anaerobic C4-dicarboxylate transporter
204	 41.67	0	223751..223882	-	43	15600975	-	VCA0206	-	hypothetical protein
205	 50.90	+1	223891..224721	-	276	15600976	nadE	VCA0207	-	NAD synthetase
206	 48.67	0	224824..225351	+	175	15600977	-	VCA0208	-	nicotinic acid mononucleotide adenylyltransferase
207	 50.82	+1	225302..225484	+	60	15600978	-	VCA0209	-	hypothetical protein
208	 46.34	0	225591..227159	+	522	15600979	-	VCA0210	-	response regulator, putative
209	 46.53	0	227217..229163	-	648	15600980	-	VCA0211	-	sensory box sensor histidine kinase
210	 46.29	0	229338..230387	+	349	15600981	-	VCA0212	-	hypothetical protein
211	 52.39	+1	230465..232054	-	529	15600982	-	VCA0213	-	hypothetical protein
212	 49.88	0	232449..233693	-	414	15600983	emrD	VCA0214	-	multidrug resistance protein D
213	 35.22	-2	233694..233852	-	52	15600984	-	VCA0215	-	hypothetical protein
214	 44.19	0	233907..234173	+	88	15600985	-	VCA0216	-	hypothetical protein
215	 45.28	0	234164..235243	-	359	15600986	-	VCA0217	-	GGDEF family protein
216	 47.97	0	235364..236620	-	418	15600987	-	VCA0218	-	thermolabile hemolysin
217	 47.75	0	237590..239815	+	741	15600988	-	VCA0219	-	haemolysin
218	 48.57	0	240114..241760	+	548	15600989	-	VCA0220	-	hemolysin secretion protein HylB
219	 51.08	+1	242027..243046	+	339	15600990	-	VCA0221	-	lactonizing lipase
220	 52.98	+1	243056..243910	+	284	15600991	-	VCA0222	-	lipase chaperone
221	 49.37	0	243986..246742	-	918	15600992	-	VCA0223	-	protease
222	 38.24	-1	246827..247132	-	101	15600993	-	VCA0224	-	hypothetical protein
223	 49.02	0	247686..248450	+	254	15600994	-	VCA0225	-	hypothetical protein
224	 39.02	-1	248610..248732	-	40	15600995	-	VCA0226	-	hypothetical protein
225	 44.71	0	248766..249767	+	333	15600996	-	VCA0227	-	iron(III) ABC transporter, periplasmic iron-compound-binding protein
226	 46.33	0	249820..250758	+	312	15600997	-	VCA0228	-	iron(III) ABC transporter, permease protein
227	 49.11	0	250748..251698	+	316	15600998	-	VCA0229	-	iron(III) ABC transporter, permease protein
228	 49.93	0	251701..252465	+	254	15600999	-	VCA0230	-	iron(III) ABC transporter, ATP-binding protein
229	 47.45	0	252511..253587	-	358	15601000	-	VCA0231	-	AraC/XylS family transcriptional regulator
230	 49.84	0	255650..255970	+	106	15601001	-	VCA0233	-	hypothetical protein
231	 41.03	-1	255986..256102	+	38	15601002	-	VCA0234	-	hypothetical protein
232	 50.34	0	256240..257433	+	397	15601003	-	VCA0235	-	acetate kinase
233	 45.12	0	257514..257810	+	98	15601004	-	VCA0236	-	hypothetical protein
234	 47.54	0	257928..258497	-	189	15601005	-	VCA0237	-	hypothetical protein
235	 48.24	0	258742..260391	+	549	15601006	-	VCA0238	-	sensor histidine kinase
236	 48.44	0	260372..261046	+	224	15601007	-	VCA0239	-	transcriptional regulator
237	 50.00	0	261049..261678	-	209	15601008	-	VCA0240	-	hypothetical protein
238	 52.09	+1	261638..262522	-	294	15601009	-	VCA0241	-	putative L-xylulose 5-phosphate 3-epimerase
239	 51.85	+1	262534..263181	-	215	15601010	ulaD	VCA0242	-	3-keto-L-gulonate-6-phosphate decarboxylase
240	 52.80	+1	263187..264008	-	273	15601011	-	VCA0243	-	hypothetical protein
241	 53.82	+1	264014..264706	-	230	15601012	araD	VCA0244	-	L-ribulose-5-phosphate 4-epimerase
242	 52.86	+1	264715..265221	-	168	15601013	-	VCA0245	-	PTS system, IIA component
243	 51.05	+1	265319..267079	-	586	15601014	ulaA	VCA0246	-	ascorbate-specific PTS system enzyme IIC/IIB
244	 47.62	0	267445..268200	+	251	15601015	-	VCA0247	-	transcriptional repressor UlaR
245	 48.41	0	268327..269394	+	355	15601016	-	VCA0248	-	putative L-ascorbate 6-phosphate lactonase
246	 50.75	0	269494..270027	-	177	15601017	-	VCA0249	-	cytochrome b561, putative
247	 45.04	0	270200..271600	-	466	15601018	-	VCA0250	-	alpha-amylase
248	 41.88	0	271740..271856	+	38	15601019	-	VCA0251	-	hypothetical protein
249	 37.84	-1	271816..271926	+	36	15601020	-	VCA0252	-	hypothetical protein
250	 48.93	0	271933..272631	+	232	15601021	-	VCA0253	-	antibiotic acetyltransferase
251	 51.73	+1	273253..275421	-	722	15601022	-	VCA0254	-	hypothetical protein
252	 56.20	+2	275510..276340	-	276	15601023	-	VCA0255	-	hypothetical protein
253	 51.34	+1	276337..277008	-	223	15601024	-	VCA0256	-	transcriptional regulator
254	 53.54	+1	276984..278438	-	484	15601025	-	VCA0257	-	sensor histidine kinase
255	 53.61	+1	278541..279053	-	170	15601026	-	VCA0258	-	hypothetical protein
256	 39.53	-1	279096..279224	-	42	15601027	-	VCA0259	-	hypothetical protein
257	 49.23	0	279248..279442	-	64	15601028	-	VCA0260	-	hypothetical protein
258	 46.18	0	279430..279756	-	108	15601029	-	VCA0261	-	hypothetical protein
259	 46.96	0	279866..280276	-	136	15601030	-	VCA0262	-	hypothetical protein
260	 44.75	0	280382..280924	-	180	15601031	-	VCA0263	-	acetyltransferase, putative
261	 45.38	0	280935..282113	-	392	15601032	-	VCA0264	-	transcriptional regulator, putative
262	 43.31	0	282297..282677	+	126	15601033	-	VCA0265	-	hypothetical protein
263	 46.64	0	282737..283510	-	257	15601034	-	VCA0266	-	AraC/XylS family transcriptional regulator
264	 46.67	0	283612..284751	+	379	15601035	-	VCA0267	-	multidrug resistance protein D
265	 47.41	0	285034..286965	+	643	15601036	-	VCA0268	-	methyl-accepting chemotaxis protein
266	 49.04	0	286981..288654	+	557	15601037	-	VCA0269	-	decarboxylase, group II
267	 48.72	0	288819..289988	+	389	15601038	-	VCA0270	-	D-alanyl-D-alanine carboxypeptidase
268	 48.28	0	290166..290513	+	115	15601039	-	VCA0271	-	hypothetical protein
45.97	MEAN

4.79	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.